mRNA_Ecto-sp6_S_contig102.877.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig102.877.1
Unique NamemRNA_Ecto-sp6_S_contig102.877.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig102.877.1 vs. uniprot
Match: A0A6H5KUS4_9PHAE (HIT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUS4_9PHAE)

HSP 1 Score: 375 bits (963), Expect = 4.020e-128
Identity = 175/188 (93.09%), Postives = 182/188 (96.81%), Query Frame = 1 
Query:    4 SRIESEYSFGSKPFGHYKGTPRVPIENVKGFRVGRDGWKEVFHLFFKNCDHPALQDQIYFQDERFMVIYDVYPKARHHLLLMPRPSFLDVMRPSDLRREHLSALRQMHALGRAVAEHLSQQGIGEIRIGVHAVPSMEPLHMHIISQDFDSERLRMPRHWNIFTTEIFLEPAWVEEMLERHGCLQLDLE 567
            S IESEYS GS+PFGHYK TP VPIEN+KGFRVGRDGWKEVFHLFFKNCDHPALQDQIYFQDERFMVIYD YPKARHHLLLMPRPSFLDV+RPSDLRREHLSALRQMHALGRAVAE LSQQGIGEIRIGVHAVPSMEPLHMHIISQDFDSER+RMPRHWNIFTT+IFLEPAW+EEMLERHGCLQLD+E
Sbjct:    3 SGIESEYSIGSQPFGHYKETPPVPIENIKGFRVGRDGWKEVFHLFFKNCDHPALQDQIYFQDERFMVIYDGYPKARHHLLLMPRPSFLDVIRPSDLRREHLSALRQMHALGRAVAEGLSQQGIGEIRIGVHAVPSMEPLHMHIISQDFDSERMRMPRHWNIFTTDIFLEPAWIEEMLERHGCLQLDME 190
[Close]
BLAST of mRNA_Ecto-sp6_S_contig102.877.1 vs. uniprot
Match: D7G953_ECTSI (Aprataxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G953_ECTSI)

HSP 1 Score: 342 bits (877), Expect = 2.710e-115
Identity = 161/165 (97.58%), Postives = 162/165 (98.18%), Query Frame = 1 
Query:    1 MSRIESEYSFGSKPFGHYKGTPRVPIENVKGFRVGRDGWKEVFHLFFKNCDHPALQDQIYFQDERFMVIYDVYPKARHHLLLMPRPSFLDVMRPSDLRREHLSALRQMHALGRAVAEHLSQQGIGEIRIGVHAVPSMEPLHMHIISQDFDSERLRMPRHWNIFTT 495
            MSRIESEYSFGSKPFGHYKGTPRVPIENVKGFR+GRDGWKEVFHLFFKNCDHPALQDQIYFQDERFMVIYD YPKARHHLLLMPRPSFLDVMRPSDLRREHLSAL QMHALGRAVAE LSQQGIGEIRIGVHAVPSMEPLHMHIISQDFDSERLRMPRHWNIFTT
Sbjct:    1 MSRIESEYSFGSKPFGHYKGTPRVPIENVKGFRIGRDGWKEVFHLFFKNCDHPALQDQIYFQDERFMVIYDGYPKARHHLLLMPRPSFLDVMRPSDLRREHLSALHQMHALGRAVAEDLSQQGIGEIRIGVHAVPSMEPLHMHIISQDFDSERLRMPRHWNIFTT 165
[Close]
BLAST of mRNA_Ecto-sp6_S_contig102.877.1 vs. uniprot
Match: D8LEA7_ECTSI (FHA-HIT protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEA7_ECTSI)

HSP 1 Score: 200 bits (508), Expect = 7.360e-56
Identity = 105/206 (50.97%), Postives = 135/206 (65.53%), Query Frame = 1 
Query:   52 YKGTPRVPIENVKGFRVGRDGWKEVFHLFFKNCDHPA-LQDQIYFQDERFMVIYDVYPKARHHLLLMPRPSFLDVMRPSDLRR-EHLSALRQMHALGRAVAEHLSQQGIGEIRIGVHAVPSMEPLHMHIISQDFDSERLRMPRHWNIFTTEIFLEPAWVEEMLERHGCLQLDLESRYIRLREQTP-RCHICHETIGGVERLKAHYL 660
            Y+ TP  P++       G   WK V   + K+   P  LQ ++YF D + +V+YD YPK+R+HLLL+P+P FLDV + S+LRR EHLS+LRQ+HA   AVAE LSQQG G IR G H +PS+EPLH+HIISQDFDSERL   +HWN FTT+ FL+ +WVE  L   G L LD E   ++  E TP RC  CH  +  + +LK H L
Sbjct:  268 YRRTPPTPVK-------GAGHWKAVLFQYLKDEPMPVELQREVYFSDNQCVVVYDGYPKSRYHLLLLPKPKFLDVKQASELRRDEHLSSLRQLHATATAVAEALSQQGAGVIRCGYHGIPSLEPLHLHIISQDFDSERLTKRKHWNSFTTDFFLDASWVEARLLERGSLGLDKER--LKALEATPLRCFRCHSPMTNMTKLKEHLL 464
[Close]
BLAST of mRNA_Ecto-sp6_S_contig102.877.1 vs. uniprot
Match: A0A6H5KT50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT50_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 2.820e-49
Identity = 97/131 (74.05%), Postives = 104/131 (79.39%), Query Frame = 1 
Query:  562 LESRYIRLREQTPRCHICHETIGGVERLKAHYLSHEAIARVYGPSRQRNARQVGRRSIPEPPRHEQRHLERVDPRSQQGSWRRGHSAPQTRVRGAQYQGTRSNEFPQGKPVSYLGARPSRSIQGRASAVWN 954
            + +RYIRL+EQTPRCHIC ETIGGVERLKAHYLSHE IARVYGPSRQRNA QV  RSIPE P HEQRHL R DPRSQQGSWRRGH APQTRV GAQYQ TR+NEFPQG   +    RP  + QG  S+  N
Sbjct:    1 MPNRYIRLKEQTPRCHICQETIGGVERLKAHYLSHETIARVYGPSRQRNASQVDHRSIPESPLHEQRHLGRADPRSQQGSWRRGHCAPQTRVEGAQYQSTRNNEFPQGPGRAN---RPRWAGQGGCSSTRN 128
[Close]
BLAST of mRNA_Ecto-sp6_S_contig102.877.1 vs. uniprot
Match: A0A6H5K612_9PHAE (HIT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K612_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 3.830e-43
Identity = 83/153 (54.25%), Postives = 108/153 (70.59%), Query Frame = 1 
Query:   52 YKGTPRVPIENVKGFRVGRDGWKEVFHLFFKNCDHP-ALQDQIYFQDERFMVIYDVYPKARHHLLLMPRPSFLDVMRPSDLRR-EHLSALRQMHALGRAVAEHLSQQGIGEIRIGVHAVPSMEPLHMHIISQDFDSERLRMPRHWNIFTTEIF 504
            Y+ TP VP++       G   WK V   + K+   P  LQ +++F +++ +V+YD YPK+R+HLLL+P+P FLDV + S+LRR EHLS+LRQ+HA   AVAE LSQQG G IR G H +PS+EPLH+HIISQDFDSERL   +HWN FTT  F
Sbjct:  257 YRQTPPVPVK-------GAGHWKAVLFQYLKDRPMPDELQREVFFSNDQCVVVYDGYPKSRYHLLLLPKPKFLDVKQASELRRDEHLSSLRQLHATAAAVAEALSQQGAGVIRCGYHGIPSLEPLHLHIISQDFDSERLTKRKHWNSFTTGTF 402
[Close]
BLAST of mRNA_Ecto-sp6_S_contig102.877.1 vs. uniprot
Match: D7G951_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G951_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 5.330e-39
Identity = 80/190 (42.11%), Postives = 110/190 (57.89%), Query Frame = 1 
Query:  118 KEVFHLFFKNCDHPALQDQIYFQDERFMVIYDVYPKARHHLLLMPRPSFLDVMRPSDLRREHLSALRQMHALGRAVAEHLSQQG---------IGEIRIGVHAVPSMEPLHMHIISQDFDSERLRMPRHWNIFTTEIFLEPAWVEEMLERHGCLQLDLESRYIRLREQTPRCHIC--HETIGGVERLKAH 654
            K    LF     +  +Q ++++ DE  MV YD +PK + HLL++PR +FL+V  PS LR+EHL  LR++HA+G A+A+ LS Q             IR G HA+PS EPLH+H++S D D   L+   HWN FTT++FLE +WVE  LE  G L LD+ + +  L     RC  C        +E LKAH
Sbjct:   73 KTALFLFLMYHTNEQIQGEVFYMDEDVMVTYDGFPKGKFHLLVVPRETFLNVTGPSALRKEHLPKLRRLHAMGTALAKALSLQAEVRELSHPSANVIRCGYHAMPSQEPLHLHVVSMDLDGTGLKRKTHWNSFTTDLFLEASWVERRLEERGSLGLDMRN-FRELEHVKLRCFRCPGEPEFRHMESLKAH 261
[Close]
BLAST of mRNA_Ecto-sp6_S_contig102.877.1 vs. uniprot
Match: A0A0G4IM90_PLABS (HIT domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IM90_PLABS)

HSP 1 Score: 135 bits (339), Expect = 4.620e-34
Identity = 74/185 (40.00%), Postives = 107/185 (57.84%), Query Frame = 1 
Query:  115 WKEVFHLFFKNCDHPALQDQIYFQDERFMVIYDVYPKARHHLLLMPRPSFLDVMRPSDLRREHLSALRQMHALGRAVAEHLSQQGIGE--IRIGVHAVPSMEPLHMHIISQDFDSERLRMPRHWNIFTTEIFLEPAWVEEMLERHGCLQLDLESRYIRLREQTPRCHICHETIGGVERLKAHYLS 663
            WK V      N         ++  D+  + IYD YPKAR HLL++PR +   +   S LRREHL  +R M   G+  AE LS  G+     ++G HAVPS++ LHMH+IS D DSE L+  +HWN FTTE FL P +V   +E HG +Q+D  +RY  + ++   CH C +++  +  LK+H ++
Sbjct:   24 WKGVLSALVNNA--ARFPFVVFADDDDTVTIYDRYPKARVHLLVLPRANISSI---SVLRREHLGLVRAMINSGKRAAELLSNAGMFPEGYKMGFHAVPSLDRLHMHLISCDMDSEALKNKKHWNSFTTEFFLPPEFVVSQIEEHGSVQID-RNRYEEVLKRPLACHKCRQSLKTIPALKSHIVN 202
[Close]
BLAST of mRNA_Ecto-sp6_S_contig102.877.1 vs. uniprot
Match: A0A1Y2ANP7_9FUNG (HIT-like protein n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2ANP7_9FUNG)

HSP 1 Score: 135 bits (340), Expect = 3.650e-33
Identity = 71/197 (36.04%), Postives = 117/197 (59.39%), Query Frame = 1 
Query:   79 ENVKGFRVGRDGWKEVFHLFFKNCDHPALQDQIYFQDERFMVIYDVYPKARHHLLLMPRPSFLDVMRPSDLRREHLSALRQMHALGRAVAEHLSQQ-GIGEIRIGVHAVPSMEPLHMHIISQDFDSERLRMPRHWNIFTTEIFLEPAWVEEMLERHGCLQLDLESRYIRLREQTPRCHICHETIGGVERLKAHYLSH 666
            +N K     +  W +   L+ ++ +H   +D IY   ++FMVIYD YPKA++HLL++P+     +     L + HL  ++ M  L + V   L+++ G  E +IG HA+PSM  +HMH+IS+DF S  L+  +HWN FT+E FL+P+++ E L  +GC++LD +  Y  + +Q  +C  C + +  +  LKAH  +H
Sbjct:  114 DNSKEKASVKTSWSDGLLLYIRHPEH--FKDSIYKIYDKFMVIYDKYPKAKYHLLIIPKEEIKSIY---YLNKSHLPLIKDMIELSKEVINDLNKKNGEIEFQIGFHAIPSMNQVHMHVISRDFISPFLKTKKHWNTFTSEFFLKPSFIIEQLNNNGCIKLDRQY-YENILKQPLKCCKCGQDLKNMPTLKAHLTTH 304
[Close]
BLAST of mRNA_Ecto-sp6_S_contig102.877.1 vs. uniprot
Match: A0A210QY14_MIZYE (Aprataxin n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210QY14_MIZYE)

HSP 1 Score: 128 bits (322), Expect = 1.230e-31
Identity = 68/174 (39.08%), Postives = 105/174 (60.34%), Query Frame = 1 
Query:  145 NCDHPALQDQIYFQDERFMVIYDVYPKARHHLLLMPRPSFLDVMRPSDLRREHLSALRQMHALGRAVAEHLSQQGIGEIRIGVHAVPSMEPLHMHIISQDFDSERLRMPRHWNIFTTEIFLEPAWVEEMLERHGCLQLDLESRYIRLREQTPRCHICHETIGGVERLKAHYLSH 666
            + D P LQ+ +   DE+ ++I D YPKA+HH L+MP+ +  ++   + L+ EHL  L  +H  G  V  H + + + + R+G HAVPSM  LH+H+ISQDFDS  L+  +HWN FTTE F +   + +ML+  G +QLD  S++  + ++  RCH+C +    +  LK H   H
Sbjct:   37 SMDDPELQEYV---DEKVVIIKDKYPKAKHHFLVMPKENIPNL---NSLKPEHLELLEYLHEKGEEVI-HRTDETL-KFRLGYHAVPSMSHLHLHVISQDFDSPCLKNKKHWNSFTTEYFFDSEDIMKMLKEKGKVQLD-SSKFQDVLKRNLRCHVCRKDFSTMPALKTHIKVH 201
[Close]
BLAST of mRNA_Ecto-sp6_S_contig102.877.1 vs. uniprot
Match: UPI00087828AC (aprataxin isoform X1 n=4 Tax=Scleropages formosus TaxID=113540 RepID=UPI00087828AC)

HSP 1 Score: 132 bits (331), Expect = 3.180e-31
Identity = 73/172 (42.44%), Postives = 101/172 (58.72%), Query Frame = 1 
Query:  160 ALQD---QIYFQDERFMVIYDVYPKARHHLLLMPRPSFLDVMRPSDLRREHLSALRQMHALGRAVAEHLSQQGIGEIRIGVHAVPSMEPLHMHIISQDFDSERLRMPRHWNIFTTEIFLEPAWVEEMLERHGCLQLDLESRYIRLREQTPRCHICHETIGGVERLKAHYLSH 666
            ++QD   Q+Y +D+  +VI D YPKARHH L++P  S   +     LR EH S LR MH +   + E          R+G HA+PSM  +H+H+ISQDFDS  L+  +HWN FTTE FLE   V EMLE+ G  Q+ ++     L +   RCH+CH+ +  + +LK H  SH
Sbjct:  211 SMQDPKMQVY-KDDMVVVIKDKYPKARHHWLVLPWESIASL---KALRAEHCSLLRHMHHVAERMVEQCPDASKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFTTEYFLESQAVIEMLEKDG--QVTVKDGASELLKFPLRCHVCHKELSTIPQLKEHLRSH 376
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig102.877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUS4_9PHAE4.020e-12893.09HIT domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G953_ECTSI2.710e-11597.58Aprataxin n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LEA7_ECTSI7.360e-5650.97FHA-HIT protein n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A6H5KT50_9PHAE2.820e-4974.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K612_9PHAE3.830e-4354.25HIT domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G951_ECTSI5.330e-3942.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0G4IM90_PLABS4.620e-3440.00HIT domain-containing protein n=1 Tax=Plasmodiopho... [more]
A0A1Y2ANP7_9FUNG3.650e-3336.04HIT-like protein n=1 Tax=Neocallimastix california... [more]
A0A210QY14_MIZYE1.230e-3139.08Aprataxin n=1 Tax=Mizuhopecten yessoensis TaxID=65... [more]
UPI00087828AC3.180e-3142.44aprataxin isoform X1 n=4 Tax=Scleropages formosus ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig102contigEcto-sp6_S_contig102:632744..637600 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score342.4
Seed ortholog evalue2.7e-91
Seed eggNOG ortholog2880.D7G953
Preferred nameHNT3
Model size1180
KEGG koko:K10863
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003697,GO:0003824,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006163,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008270,GO:0008409,GO:0009117,GO:0009150,GO:0009259,GO:0009987,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016819,GO:0016895,GO:0017076,GO:0019001,GO:0019002,GO:0019637,GO:0019693,GO:0030983,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0033554,GO:0033699,GO:0034641,GO:0035312,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044281,GO:0044424,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0047627,GO:0050896,GO:0051716,GO:0055086,GO:0071704,GO:0072521,GO:0090304,GO:0090305,GO:0097159,GO:0097367,GO:0120108,GO:0140097,GO:1901135,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1905108,GO:1990165
Exons8
EggNOG free text desc.DNA 5'-adenosine monophosphate hydrolase activity
EggNOG OGsKOG0562@1,KOG0562@2759
EC3.1.11.7,3.1.11.8,3.1.12.2
Cds size1179
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig102.877.1prot_Ecto-sp6_S_contig102.877.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig102 632744..637600 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348739.4904137-CDS-Ecto-sp6_S_contig102:632743..6331831682348739.4904137-CDS-Ecto-sp6_S_contig102:632743..633183Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig102 632744..633183 -
1682348739.5038857-CDS-Ecto-sp6_S_contig102:633571..6336381682348739.5038857-CDS-Ecto-sp6_S_contig102:633571..633638Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig102 633572..633638 -
1682348739.5117764-CDS-Ecto-sp6_S_contig102:634065..6341681682348739.5117764-CDS-Ecto-sp6_S_contig102:634065..634168Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig102 634066..634168 -
1682348739.5190732-CDS-Ecto-sp6_S_contig102:634590..6346631682348739.5190732-CDS-Ecto-sp6_S_contig102:634590..634663Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig102 634591..634663 -
1682348739.5267067-CDS-Ecto-sp6_S_contig102:635790..6359031682348739.5267067-CDS-Ecto-sp6_S_contig102:635790..635903Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig102 635791..635903 -
1682348739.5343692-CDS-Ecto-sp6_S_contig102:636112..6362341682348739.5343692-CDS-Ecto-sp6_S_contig102:636112..636234Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig102 636113..636234 -
1682348739.5420263-CDS-Ecto-sp6_S_contig102:636425..6365181682348739.5420263-CDS-Ecto-sp6_S_contig102:636425..636518Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig102 636426..636518 -
1682348739.54989-CDS-Ecto-sp6_S_contig102:637432..6376001682348739.54989-CDS-Ecto-sp6_S_contig102:637432..637600Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig102 637433..637600 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig102.877.1

>prot_Ecto-sp6_S_contig102.877.1 ID=prot_Ecto-sp6_S_contig102.877.1|Name=mRNA_Ecto-sp6_S_contig102.877.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=393bp
MSRIESEYSFGSKPFGHYKGTPRVPIENVKGFRVGRDGWKEVFHLFFKNC
DHPALQDQIYFQDERFMVIYDVYPKARHHLLLMPRPSFLDVMRPSDLRRE
HLSALRQMHALGRAVAEHLSQQGIGEIRIGVHAVPSMEPLHMHIISQDFD
SERLRMPRHWNIFTTEIFLEPAWVEEMLERHGCLQLDLESRYIRLREQTP
RCHICHETIGGVERLKAHYLSHEAIARVYGPSRQRNARQVGRRSIPEPPR
HEQRHLERVDPRSQQGSWRRGHSAPQTRVRGAQYQGTRSNEFPQGKPVSY
LGARPSRSIQGRASAVWNERLVIVAMRRGQASREFRVRTSQPTKQFHRYA
LKRRVYPTTIPVVTPPASDGSVRTFEGPEQRSERVWCEENSKH
back to top

mRNA from alignment at Ecto-sp6_S_contig102:632744..637600-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig102.877.1 ID=mRNA_Ecto-sp6_S_contig102.877.1|Name=mRNA_Ecto-sp6_S_contig102.877.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4857bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:632744..637600- (Ectocarpus species6 EcLAC_371)
ATGTCAAGGATCGAGTCCGAATACTCGTTTGGCAGCAAGCCGTTCGGGCA
CTACAAGGGGACGCCGCGTGTACCAATCGAAAATGTGAAGGGATTCCGCG
TTGGGCGGGATGGCTGGAAGGAGGTGTTTCACCTGTTCTTCAAAAATTGT
GACCATCCGGCATTGCAGGTGAAGTCAGCGTCAAACCATCCGCGCCGTCC
ACTCAGTCAACCTACACTCCCGAGATTTGTGTCTGATCGACTCAAGGTAT
ACGACAGGCGGCCGCCTGGTCACATGGCTGCTAGAATTGCAAACTTTAAG
TATTCGCCGAACCTTCCTCTCGACTGCTCCACGAAGACGGAGTAAACAAC
CAATATCTGGTACATGCGCTGACCCCAATCTGTAATATGCGATGGAAAAC
GGGACTGACGGCGTTGTCTCAATCAAGTGGATCATGACGCGCATTGACCC
AAGAGCTCACGTATTCACACTCCGGAGTATGGTTGTATCACCATGGAGTA
TTGGTTGTACCTCCATCTCCTCAGCTCACATGCAGCCCTACAGGTGAAAT
TCCTTCGATATTGGAACTGCCGCACCTCCCACACGCAGATGGAATACTGA
GCGGGATGATTGAAAAAGTTGTGTCTTCACGTGCTGGTGCAGCATCGGAG
CTCCACCTGTTTAATTTTGTCTCGCACGGTATATAGTACAACGTTGAGAT
GTTTACCAGTTTGTTGCGAAGCATGCCCATGTACAGTAGTCAAATTTCAT
CGTAGTCTATACGTGACGAAAACGTTTGGGCAAAACAATCCGCAAGACAT
TTTGATTACCTGGGAATACTTCTTCAACATTGTTAAGCCCTAGCAGACTG
TGCAGACATTCAAAGTAACTTGTTGTTGCAGGATAGGGAAAAGAGCTGAA
CATGTTCTCAGTTGCCCTGGTGTTTTGGAGTTAGGGTTTGGTGTCTTCAC
ACAATATTGTTTTCAATGCTACCTTGTCCAATGTCGGTACTGGTGCAAAG
ACGCGGACGGCTTCCGTGTGGGCAAGATTGTCTAGATACGCAAATTTTTC
CTGCGTCATCGATCTTGATTTCGTCACTGCAGGACCAGATCTACTTCCAA
GACGAGAGGTTCATGGTAATTTACGACGTATACCCCAAAGCACGGCACCA
TCTACTTTTGATGCCGAGGCCGTCGGTGAGTTGACATGTGCGCACGGTCA
AAATGTTCCTTGTATATGACGGTCATTCGAGAGGCCTATGCGCAGGGAGT
GAAAGCCGTCAAAGTCTGGAGCTGATGGATAGCCAATACTGCGAGGTTAG
CATGCCGCTGATCTCCTCTTCGTTCTTACTCTCGCGGCTACAATTTGGCT
GAACCCTCTCAACCAGTTTCTCGATGTCATGCGGCCATCGGACCTCCGAC
GCGAACACCTCTCAGCTCTACGCCAGATGCATGCATTGGGTAGGGCAGTG
GCGGAACACTTGTCGCAGCAGGGCATCGGCGAAATCAGGTGAACTGGGGC
GGAAGACAACTGTCGGATATCATTGCAAACGTGCCCGAGGTGTAGCGGTA
TGTTGGAAAAAAACGGAAAACAGGCAGGAGTCGTATCGGGTGTGCGGGGT
ACGTCGGGGGTTATTTACAAGAGCTTTTATTGCACCATGACCCTCACCTG
TATTCACTGTCACGATCCACTCACTCTGTCTGTTTGCGGCCTGCAAGGAT
CGGCGTGCACGCTGTTCCTTCAATGGAGCCGTTGCACATGCACATCATCA
GCCAAGACTTCGACAGCGAAAGACTGCGAATGCCGCGTCATTGGAACATC
TTCACCACAGGTAGCCGCCTTCTGCATTGCCGACCGTGTGCTTGAAACGG
GTGCGCTCGATAGTTATCTGTAGGTGCATGAGGGTGCAAAAGACGGCGGG
GATCGCCAGGTAAACACGCAGGACACGGGAGCGGGAGAAGGGCTGCGGCT
TCCCTATTTGCCCTAGAGAGTGGATTATTCGGTTGAGATAGCGTACGCTT
ATCACGTTTGATGTACCTCGCGAATGCTGCAGCGTGCGGGCGATAGAGAA
TTCACTACGTGCGTCATTTGTGGATCTCTAGCCTCGTGTGACTCTTCTTG
CTAAAATGAGTACTGTAAGACATGTGGCATTTAAAGAGCTTCAAAACGCA
TCCCCACCACTGCACACCGGCACGGCGCAGTAGTCGAGTTATCGTCGTCG
TTGAACACTATCTGACCGAGCCTCTTCCTTGCTTTCACAGGTAAACAGTT
TGACTCGTTCGTGAGTTCATGACCCTTACCAGTGTTGCGCTGTGGGCCGT
TCGGTGGCGCATAATACAATAAATACCGATTCCATCGGAACTGCGCAGCG
CAGTTTCGGTCGATCCAACTGTCGTTTCTCTTCGCGAGAATGCAGCCTTG
GCGGGTATTCCTTCGTGCTGTTCGTGCACCCTGACAGAATACTCGCCATC
ATCATTAGCTCCCTTGTAGCCTCAGACCCTTTCTCAATGTCCGCTCTTGC
CGCCGCCGACCCAATGGAAACATCTGGAAGCAGATGCCGTTCGTTGCGGT
GTTCTCGTGAAAATAGTTTTATCGCCTTGACGACGTCATCAATATCGACG
TTACATGTCACACGTTGAAATCTCAGCTGTGGTCTACTTCGTACAAAACA
AGTGACCTATGCCCGTCAAAGCAACACGACCGTCAACAAATTCACAAATC
GTCGGGCGCGACGACCGTGAGTTCAGACGCCAATAAAACCGTTTGTAGCC
CAAACAGAGGGGTTGGGGTTAGACGTTGTTTCTTGCACACCTAGTTCCAC
ACAACGTTGAAGGTGGATCGTGCTTTTAATGTGTTTTTCAATATTTACCC
TGCCTGGTGACCCTGCTGTGGGTATGCGAAATGAATCGAACACCCGGTTG
TTGTGTTGTAATCCATGCGGCCGTGAAAACTATTCAGAAATCTTCCTCGA
ACCTGCTTGGGTAGAGGAAATGCTTGAGCGGCACGGATGCCTCCAGCTGG
ATTTGGAAAGGTGAACATTCGTATTCCATGTGCACAACGCACTACAGCCC
CTGCGAGTCCAAAAGTAGCTGTGCACGTGGTACCCCGTATTACTGTAGGC
ACACCCCGCTTGACGTTTTTCATCTAATGCGGGGTCATTATTCTTGAGAG
CTGCGCGATGTTCCAACAAGATCCTCTGTCCGCTGCGGGAAATGCAACCG
ACAAAGGCAGACCGAACAAAATTCGGGGGGGAGACCCGATGCGCAGAATG
CGTTGAATAGAGCGAGACAGTTCGAGTATTGTCGATTTCATGTAATACGA
GGGTTGATGAGAGAAAGTGATCTGTCGTATCGGCTTGGTCCTAGTGGTAG
TATGCACCAATCGTGAACTACAATCGTGAACTATGCACTGGCGACTTCTG
CGAGGTGTGTCTGACCTTCCATCCATGCCTAGCAGGTACATTCGGCTGAG
GGAACAAACTCCGCGGTGCCATATTTGCCACGAAACAATTGGCGGGGTTG
AGCGACTCAAGGCCCACTATCTTTCCCACGAGGCGGTAAGCAGTTGCACA
TATAGAACATGTCCCTCGTACATTGAACGAGAGCAGCTAGGCTCTCCCGT
GGTCACGGCTACTCAAAGCATCCGCCATTCCCGGGCCAAAGAATGTGTTC
CATTCATGCCGCAGTCGTCAGCTGAGCGACAAAACTCACGGCATAGACAG
CACACATCGATTCTGCTGTCAACTGCCAGTCATCGCTCCTCTTCCGGAAC
TGGGTCATGAAAGTATCACGAAGGGACTGTCGAAGCGCTGGCTCACCTGC
CTGGTTCTCCAGAGTCGCATTAACGCATGGATTGCCCGACTCCGGGTGCA
CGCACAGACGCAACACGCTGACCGTGAGACGTTGAAGGCCCACAATTTCC
TTCGACAGAAACGATCGGACTTTGACACTGCGCGTCCCGCCATCACTTTG
GATGCAAACCAGATCGCACGCGTGTACGGCCCTTCTCGGCAGCGCAATGC
CAGGCAGGTTGGTCGTCGCTCTATCCCAGGTAAATTGGCCGAGTCATTCG
TACCGTTCCCATGCTGGCCAATCCGTTGTTCTGCAAGCCTGGCTATTATT
TTCTTGTTCCGTTTTTCCTTCTCGTCCCTTTCTCGTCGCCATTGAAGAAC
GTATTGTTGGTGTCGGGCCCTAGCCCCGTACCAAACATCTCCTTGCTGGC
GTTTGTACGCATACCTATTGGTGTGCGCCAGTACTTTGGGAACAACAGCA
GGTTATCGCTTGGACGACCCCCTGGAGAAGGCGTTGAGGGAAACCAAAAC
TGTCGATAGGACCAATAACGTACCGCGCGCATCCCGACAGCGCTTTTGCA
TTTGCCAGGAGGATCGACTCTCAACGACCCACTGATGTGTTTCGCGGGCA
CGATTTACGCAATACAGAACCCCCCCGCCATGAACAACGCCATCTCGAGC
GCGTGGACCCGAGAAGCCAACAAGGATCATGGAGGCGGGGTCATTCCGCG
CCGCAAACCCGGGTTAGAGGCGCGCAGTATCAGGGCACACGCAGCAATGA
GTTTCCTCAAGGTAAGCCAGTGTCGTACCTCGGCGCGCGCCCAAGCCGGA
GTATTCAAGGACGAGCATCGGCGGTCTGGAACGAAAGACTCGTGATAGTG
GCAATGAGAAGAGGGCAGGCCTCGAGGGAATTTCGGGTGCGCACCTCACA
ACCAACGAAACAGTTCCATAGGTATGCGCTAAAGCGACGGGTATACCCTA
CTACTATACCTGTCGTTACGCCGCCCGCGTCAGACGGATCGGTACGAACA
TTCGAAGGTCCCGAGCAGAGGTCGGAACGGGTCTGGTGTGAAGAAAACAG
CAAGCAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig102:632744..637600-

>mRNA_Ecto-sp6_S_contig102.877.1 ID=mRNA_Ecto-sp6_S_contig102.877.1|Name=mRNA_Ecto-sp6_S_contig102.877.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1179bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:632744..637600- (Ectocarpus species6 EcLAC_371)
ATGTCAAGGATCGAGTCCGAATACTCGTTTGGCAGCAAGCCGTTCGGGCA
CTACAAGGGGACGCCGCGTGTACCAATCGAAAATGTGAAGGGATTCCGCG
TTGGGCGGGATGGCTGGAAGGAGGTGTTTCACCTGTTCTTCAAAAATTGT
GACCATCCGGCATTGCAGGACCAGATCTACTTCCAAGACGAGAGGTTCAT
GGTAATTTACGACGTATACCCCAAAGCACGGCACCATCTACTTTTGATGC
CGAGGCCGTCGTTTCTCGATGTCATGCGGCCATCGGACCTCCGACGCGAA
CACCTCTCAGCTCTACGCCAGATGCATGCATTGGGTAGGGCAGTGGCGGA
ACACTTGTCGCAGCAGGGCATCGGCGAAATCAGGATCGGCGTGCACGCTG
TTCCTTCAATGGAGCCGTTGCACATGCACATCATCAGCCAAGACTTCGAC
AGCGAAAGACTGCGAATGCCGCGTCATTGGAACATCTTCACCACAGAAAT
CTTCCTCGAACCTGCTTGGGTAGAGGAAATGCTTGAGCGGCACGGATGCC
TCCAGCTGGATTTGGAAAGCAGGTACATTCGGCTGAGGGAACAAACTCCG
CGGTGCCATATTTGCCACGAAACAATTGGCGGGGTTGAGCGACTCAAGGC
CCACTATCTTTCCCACGAGGCGATCGCACGCGTGTACGGCCCTTCTCGGC
AGCGCAATGCCAGGCAGGTTGGTCGTCGCTCTATCCCAGAACCCCCCCGC
CATGAACAACGCCATCTCGAGCGCGTGGACCCGAGAAGCCAACAAGGATC
ATGGAGGCGGGGTCATTCCGCGCCGCAAACCCGGGTTAGAGGCGCGCAGT
ATCAGGGCACACGCAGCAATGAGTTTCCTCAAGGTAAGCCAGTGTCGTAC
CTCGGCGCGCGCCCAAGCCGGAGTATTCAAGGACGAGCATCGGCGGTCTG
GAACGAAAGACTCGTGATAGTGGCAATGAGAAGAGGGCAGGCCTCGAGGG
AATTTCGGGTGCGCACCTCACAACCAACGAAACAGTTCCATAGGTATGCG
CTAAAGCGACGGGTATACCCTACTACTATACCTGTCGTTACGCCGCCCGC
GTCAGACGGATCGGTACGAACATTCGAAGGTCCCGAGCAGAGGTCGGAAC
GGGTCTGGTGTGAAGAAAACAGCAAGCAC
back to top