mRNA_Ecto-sp6_S_contig102.866.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig102.866.1
Unique NamemRNA_Ecto-sp6_S_contig102.866.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig102.866.1 vs. uniprot
Match: D7G980_ECTSI (Phosphoribosylaminoimidazolesuccinocarboxamide synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G980_ECTSI)

HSP 1 Score: 733 bits (1892), Expect = 1.780e-263
Identity = 363/366 (99.18%), Postives = 366/366 (100.00%), Query Frame = 3 
Query:   69 MATAVASADQQAKALSLAKVVADAQEKTKKYLGRIEAAVDDSARQCIAESRLDQQLVGHSKRTVGKVRDTYICDDAIVLVTTDRQSAFDRQLARVPFKGAVLNQTSAWWFERTRHIAPNHLLGSPHPNVCVGKKCKVFPIEFVMRGYLTGSTSTSIWKNYEKGTRAYCGHTLPEGMSKNQALPMGNILTPTTKDDLHDELISAEEIVSSNRMSQQDWDECSRLAHALFRFGQEAAAERGLILVDTKYELGKDADGNIILVDEIHTPDSSRYWVKETYEGNISQGREPENIDKEFLRRWYTQHCDPYKDESVPDAPRELVAELSRRYVMLYEIITGQDFVFPSEDGPPVDERMSSSVSNFLKSHREA 1166
            MATAVASADQQAKALSLAKVVADAQEKTKKYLGRIEAAVDDSARQCIAESRLDQQLVGHSKRTVGKVRDTYICDDAIVLVTTDRQSAFDRQLARVPFKGAVLNQTSAWWFE+TRHIAPNHLLGSPHPNVCVGKKCKVFPIEFVMRGYLTGSTSTSIWKNYEKGTRAYCGHTLPEGMSKNQALPMGNILTPTTKDDLHDELISA+EIVSSNRMSQQDWDECSRLAHALFRFGQEAAAERGLILVDTKYELGKDADGNIILVDEIHTPDSSRYWVKETYEGNISQGREPENIDKEFLRRWYTQHCDPYKDE+VPDAPRELVAELSRRYVMLYEIITGQDFVFPSEDGPPVDERMSSSVSNFLKSHREA
Sbjct:    1 MATAVASADQQAKALSLAKVVADAQEKTKKYLGRIEAAVDDSARQCIAESRLDQQLVGHSKRTVGKVRDTYICDDAIVLVTTDRQSAFDRQLARVPFKGAVLNQTSAWWFEKTRHIAPNHLLGSPHPNVCVGKKCKVFPIEFVMRGYLTGSTSTSIWKNYEKGTRAYCGHTLPEGMSKNQALPMGNILTPTTKDDLHDELISAQEIVSSNRMSQQDWDECSRLAHALFRFGQEAAAERGLILVDTKYELGKDADGNIILVDEIHTPDSSRYWVKETYEGNISQGREPENIDKEFLRRWYTQHCDPYKDETVPDAPRELVAELSRRYVMLYEIITGQDFVFPSEDGPPVDERMSSSVSNFLKSHREA 366
[Close]
BLAST of mRNA_Ecto-sp6_S_contig102.866.1 vs. uniprot
Match: A0A836C963_9STRA (Phosphoribosylaminoimidazolesuccinocarboxamide synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C963_9STRA)

HSP 1 Score: 462 bits (1189), Expect = 5.350e-157
Identity = 225/353 (63.74%), Postives = 280/353 (79.32%), Query Frame = 3 
Query:  114 SLAKVVADAQEKTKKYLGRIEAAVDDSARQCIAESRLDQQLVGHSKRTVGKVRDTYICDDAIVLVTTDRQSAFDRQLARVPFKGAVLNQTSAWWFERTRH--IAPNHLLGSPHPNVCVGKKCKVFPIEFVMRGYLTGSTSTSIWKNYEKGTRAYCGHTLPEGMSKNQALPMGNILTPTTKDDLHDELISAEEIVSSNRMSQQDWDECSRLAHALFRFGQEAAAERGLILVDTKYELGKDADGNIILVDEIHTPDSSRYWVKETYEGNISQGREPENIDKEFLRRWYTQHCDPYKDESVPDAPRELVAELSRRYVMLYEIITGQDFVFPSEDGPPVDERMSSSVSNFLKSHREA 1166
            +++  VA+AQ +T++Y+ RI+AA    A  C+ E+ +   +V H  R V   RDTY+ DD IVLV+TDRQSAFDR LA+VPFKGAVLNQTSAWWFE ++   +A NH+L  P PNV +GKKC VFPIEFVMRGY+TGSTSTSIWKNYEKG R YCGH LPEG+ KN  LP GN+LTPTTKD +HDELISAEE+VSS RM+Q+DWD C+ ++HALF  GQ  AA+RGLILVDTKYELGKDA GNII+VDEIHTPDSSRYW+ ++YE  ++ G+EPENIDKEFLR W+ ++CDPY D ++P AP ELV ELSRRY+MLYE+ITGQ F FP +    VD+R++ +V+ F+ S ++A
Sbjct:    5 AVSAAVAEAQARTQEYIPRIDAA---RASLCVGETNIPTSIVAHEGRYV---RDTYVSDDFIVLVSTDRQSAFDRALAQVPFKGAVLNQTSAWWFELSKKEGVADNHVLAVPDPNVTIGKKCAVFPIEFVMRGYMTGSTSTSIWKNYEKGVRQYCGHALPEGLRKNAKLPTGNLLTPTTKDAVHDELISAEEVVSSGRMTQEDWDRCAEISHALFALGQRVAAQRGLILVDTKYELGKDAAGNIIVVDEIHTPDSSRYWIADSYETRMAAGQEPENIDKEFLRVWFAKNCDPYNDATLPAAPAELVNELSRRYIMLYEMITGQQFQFP-DPAVSVDDRINQAVAGFVASRQKA 350
[Close]
BLAST of mRNA_Ecto-sp6_S_contig102.866.1 vs. uniprot
Match: A0A4D9CWR3_9STRA (Phosphoribosylaminoimidazolesuccinocarboxamide synthase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWR3_9STRA)

HSP 1 Score: 432 bits (1110), Expect = 4.870e-145
Identity = 205/322 (63.66%), Postives = 248/322 (77.02%), Query Frame = 3 
Query:  126 VVADAQEKTKKYLGRIEAAVDDSARQCIAESRLDQQLVGHSKRTVGKVRDTYICDDAIVLVTTDRQSAFDRQLARVPFKGAVLNQTSAWWFERTRHIAPNHLLGSPHPNVCVGKKCKVFPIEFVMRGYLTGSTSTSIWKNYEKGTRAYCGHTLPEGMSKNQALPMGNILTPTTKDDLHDELISAEEIVSSNRMSQQDWDECSRLAHALFRFGQEAAAERGLILVDTKYELGKDADGNIILVDEIHTPDSSRYWVKETYEGNISQGREPENIDKEFLRRWYTQHCDPYKDESVPDAPRELVAELSRRYVMLYEIITGQDFVFP 1091
            ++  AQ+KT  YL RI     DS R     +   +    + ++ VGKVRD Y   D+++L++TDRQSAFDR LA +PFKG VLN TS WWFE+++ + PNH+L  PHPN C+GKKC VFP+EFVMRGY+TGST TS+W NY+KG R YCGH LPEG+ KNQ L   N+LTPTTKD  HDELISAEEIVSS RMSQ+DW+ C+  AHALF FGQ+ A+ RGLILVDTKYE GK ADG +I+VDE+HTPDSSRYWV ETY+  ++QG EPENIDKEFLR W+   CDPYKD ++P+AP ELV ELSRRY+MLYE+ITG DFVFP
Sbjct:   14 LITQAQQKTVAYLPRI-----DSQRAHTVSATDLEGAFQYEEKYVGKVRDVYTTADSLLLISTDRQSAFDRNLASIPFKGQVLNLTSQWWFEKSKDLVPNHILAVPHPNACIGKKCTVFPVEFVMRGYITGSTDTSLWTNYKKGVRQYCGHALPEGLKKNQQLA-NNLLTPTTKDAAHDELISAEEIVSSRRMSQEDWELCASYAHALFAFGQKVASARGLILVDTKYEFGKTADGQVIIVDEVHTPDSSRYWVAETYKARMAQGLEPENIDKEFLRLWFKDRCDPYKDATLPEAPAELVNELSRRYIMLYELITGLDFVFP 329
[Close]
BLAST of mRNA_Ecto-sp6_S_contig102.866.1 vs. uniprot
Match: A0A225VTJ2_9STRA (Phosphoribosylaminoimidazolesuccinocarboxamide synthase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VTJ2_9STRA)

HSP 1 Score: 404 bits (1038), Expect = 2.460e-134
Identity = 195/331 (58.91%), Postives = 252/331 (76.13%), Query Frame = 3 
Query:  126 VVADAQEKTKKYLGRIEAAVDDSARQCIAESRLDQQLVGHSKRTVGKVRDTYICDDAIVLVTTDRQSAFDRQLARVPFKGAVLNQTSAWWFERTRHIAPNHLLGSPHPNVCVGKKCKVFPIEFVMRGYLTGSTSTSIWKNYEKGTRAYCGHTLPEGMSKNQALPMGNILTPTTKDDLHDELISAEEIVSSNRMSQQDWDECSRLAHALFRFGQEAAAERGLILVDTKYELGKDADGNIILVDEIHTPDSSRYWVKETYEGNISQGREPENIDKEFLRRWYTQHCDPYKDESVPDAPRELVAELSRRYVMLYEIITGQDFVFPSEDGPPVDE 1118
            +VA+A+++TK YL +IE   +  A    + + L ++L    + T GKVRD Y+ +D ++LV+TDRQSAFDR LA VPFK  VL  TS WWF +T++I  NHLLG PHP+  + KKC VFP+EFV+RGY+TGSTSTS+W NY+ G R +CGH LP+G  ++Q LP  N++TPTTKD+ HDELIS  EIVSS RM+Q+ WD C +    LF FGQE AA+RGL+LVDTKYE G D  G I+L+DEIHTPDSSRYW+ E+YE  +++G+ PENIDKEFLR W+  HCDPYKDE +P+AP+ELV+ELSRRY+MLYE+ITG +F FP+ED  P D+
Sbjct:    4 IVAEAEKRTKSYLPKIE---NGQALTVTSLAALSKELPAFRQIT-GKVRDVYVFEDRVLLVSTDRQSAFDRALASVPFKSRVLTLTSVWWFNQTKNIVANHLLGVPHPSAMLCKKCTVFPVEFVVRGYITGSTSTSMWTNYKNGNRDFCGHKLPDGYKQHQKLPQ-NLVTPTTKDE-HDELISGLEIVSSGRMTQEQWDYCEKKTLELFAFGQEQAAKRGLVLVDTKYEFGYDEAGEIMLIDEIHTPDSSRYWLAESYEQRMAEGKSPENIDKEFLRLWFKDHCDPYKDEVLPEAPKELVSELSRRYIMLYELITGSEFEFPAEDTKPEDD 328
[Close]
BLAST of mRNA_Ecto-sp6_S_contig102.866.1 vs. uniprot
Match: A0A0P1AAI7_PLAHL (Phosphoribosylaminoimidazolesuccinocarboxamide synthase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AAI7_PLAHL)

HSP 1 Score: 403 bits (1035), Expect = 6.980e-134
Identity = 193/333 (57.96%), Postives = 250/333 (75.08%), Query Frame = 3 
Query:  129 VADAQEKTKKYLGRIEAAVDDSARQCIAESRLD--QQLVGHSKRTVGKVRDTYICDDAIVLVTTDRQSAFDRQLARVPFKGAVLNQTSAWWFERTRHIAPNHLLGSPHPNVCVGKKCKVFPIEFVMRGYLTGSTSTSIWKNYEKGTRAYCGHTLPEGMSKNQALPMGNILTPTTKDDLHDELISAEEIVSSNRMSQQDWDECSRLAHALFRFGQEAAAERGLILVDTKYELGKD-ADGNIILVDEIHTPDSSRYWVKETYEGNISQGREPENIDKEFLRRWYTQHCDPYKDESVPDAPRELVAELSRRYVMLYEIITGQDFVFPSEDGPPVDE 1118
            +A+A+++T+ YL +IEA       Q +  + LD  ++++   K+  GKVRD Y+ +D ++LV+TDRQSAFDR LA VPFK  VL  TS WWF +T+HI  NHLL  PHP+  +  KC VFP+EFV+RGY+TGSTSTS+W NY+ G+R +CGHTLP+G  ++Q LP  N++TPTTKDD HDELIS   IV S RM+Q+ WD C + A ALF FGQ+ AA+RGLILVDTKYE G D A G I+L+DEIHTPDSSRYW+ E+YE  +++G+ PENIDKEFLR W+ +HCDPY D  +P+AP+ELV ELSRRY++LYE+ITG  F FP+ D  P DE
Sbjct:    4 IAEAEKRTQSYLSKIEAG------QTLTTTSLDSLEKVLPAYKKVQGKVRDVYVFEDRVLLVSTDRQSAFDRALASVPFKSRVLTLTSVWWFNQTKHIVKNHLLSVPHPSAMLCTKCTVFPVEFVVRGYITGSTSTSMWTNYKNGSRDFCGHTLPDGYKQHQKLPQ-NLVTPTTKDDEHDELISGATIVQSRRMTQEQWDFCEQKALALFAFGQDQAAQRGLILVDTKYEFGLDQATGEIVLIDEIHTPDSSRYWLAESYEQRMAEGKSPENIDKEFLRLWFKEHCDPYNDAILPEAPKELVMELSRRYILLYELITGSRFEFPTTDSKPEDE 329
[Close]
BLAST of mRNA_Ecto-sp6_S_contig102.866.1 vs. uniprot
Match: D8LZN9_BLAHO (AIRC domain-containing protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8LZN9_BLAHO)

HSP 1 Score: 407 bits (1046), Expect = 1.450e-133
Identity = 197/336 (58.63%), Postives = 242/336 (72.02%), Query Frame = 3 
Query:  129 VADAQEKTKKYLGRIEAAVDDSARQCIAESRLDQQLVGHSKRTVGKVRDTYICDDAIVLVTTDRQSAFDRQLARVPFKGAVLNQTSAWWFERTRHIAPNHLLGSPHPNVCVGKKCKVFPIEFVMRGYLTGSTSTSIWKNYEKGTRAYCGHTLPEGMSKNQALPMGNILTPTTKDDLHDELISAEEIVSSNRMSQQDWDECSRLAHALFRFGQEAAAERGLILVDTKYELGKDADGNIILVDEIHTPDSSRYWVKETYEGNISQGREPENIDKEFLRRWYTQHCDPYKDESVPDAPRELVAELSRRYVMLYEIITGQDFVFPSEDGPPVDERMSSSV 1136
            VAD+  +TK YL +I+ A      +C   S+ + + +      +GKVRD + C+D +VL+TTDR S FDRQL  VPFKG VLN TSAWWF++T HI PNH+L  P  NV +G+KC  FPIEFVMRGY+TGSTSTS+W NY+ G R YCG  LPEG+ KNQ L   N++TPTTK D HDELIS E++V    MSQ+DWD C++ A  LF FGQ+ A E GLILVDTKYE GKD +G I L+DEIHTPDSSRYW+  TYE   + G  P+NIDKEFLR WY  HCDPYKDE +P+AP +LV ELSRRY+ LYE+ITG+DF FP EDG    +R+  +V
Sbjct:  144 VADSDIRTKSYLSKIDQA------RCNTLSKTNLEGINVQNLYIGKVRDRFECNDKVVLITTDRMSGFDRQLCTVPFKGQVLNLTSAWWFKQTEHIVPNHVLAIPDANVTIGRKCTPFPIEFVMRGYITGSTSTSLWTNYQNGVRKYCGIDLPEGLKKNQKL-WENLITPTTKSDEHDELISPEDVVKRGFMSQEDWDYCAQKARELFAFGQKVADEHGLILVDTKYEFGKDENGMIRLIDEIHTPDSSRYWISSTYEARFAAGENPDNIDKEFLRTWYRTHCDPYKDEVIPEAPADLVNELSRRYIQLYELITGEDFRFP-EDGRNAADRIHDNV 471
[Close]
BLAST of mRNA_Ecto-sp6_S_contig102.866.1 vs. uniprot
Match: A0A2D4CG46_PYTIN (Phosphoribosylaminoimidazolesuccinocarboxamide synthase n=4 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CG46_PYTIN)

HSP 1 Score: 400 bits (1027), Expect = 1.430e-132
Identity = 196/342 (57.31%), Postives = 249/342 (72.81%), Query Frame = 3 
Query:  135 DAQEKTKKYLGRIEAAVDDSARQCIAESRLDQQL--VGHSKRTVGKVRDTYICDDAIVLVTTDRQSAFDRQLARVPFKGAVLNQTSAWWFERTRHIAPNHLLGSPHPNVCVGKKCKVFPIEFVMRGYLTGSTSTSIWKNYEKGTRAYCGHTLPEGMSKNQALPMGNILTPTTKDDLHDELISAEEIVSSNRMSQQDWDECSRLAHALFRFGQEAAAERGLILVDTKYELGKDADGNIILVDEIHTPDSSRYWVKETYEGNISQGREPENIDKEFLRRWYTQHCDPYKDESVPDAPRELVAELSRRYVMLYEIITGQDFVFPS-EDGPPVDERMSSSVSNFLK 1151
            DAQ++T+ Y+ RI      + R  +  + LD     +   ++ VGKVRD Y+ DDA++LV+TDRQSAFDR LA +P KG VL  TS WWF  T+HI PNHLL +PHP+  + KKC VFP+EFV+RGYLTGSTSTS+W NY KG R +CGH L +G +++Q LP  N++TPTTKDD+HDELIS EE+V S RM+Q  WD CS  A  LF FGQ+ AA+RGLILVDTKYE G DA+G I+L+DEIHTPDSSRYW+  +Y   +++G  PENIDKEFLR W+ +HCDPYKD  +P+AP ELV ELSRRY++LYE+ITG  F FP   D   V +++  SV   L+
Sbjct:   12 DAQQRTRDYVARI------NPRDVLTATSLDAIAAELPAFRQIVGKVRDVYVFDDAVLLVSTDRQSAFDRALASIPXKGRVLTLTSVWWFRATQHIVPNHLLSTPHPSAMLCKKCTVFPVEFVVRGYLTGSTSTSMWTNYAKGVRDFCGHRLDDGWTQHQKLPR-NMVTPTTKDDVHDELISGEEVVRSGRMTQAQWDYCSAKALELFAFGQQEAAKRGLILVDTKYEFGVDANGEILLIDEIHTPDSSRYWLAHSYXERLAKGESPENIDKEFLRLWFKEHCDPYKDAVLPEAPVELVLELSRRYILLYELITGDRFAFPDGADTRSVAQQLQDSVREALR 346
[Close]
BLAST of mRNA_Ecto-sp6_S_contig102.866.1 vs. uniprot
Match: A0A357FLP9_9CHLR (Phosphoribosylaminoimidazole-succinocarboxamide synthase n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A357FLP9_9CHLR)

HSP 1 Score: 397 bits (1021), Expect = 5.950e-132
Identity = 196/335 (58.51%), Postives = 247/335 (73.73%), Query Frame = 3 
Query:  144 EKTKKYLGRIEAAVDDSARQCIAESRLDQQLVGHSKRTVGKVRDTYICDDAIVLVTTDRQSAFDRQLARVPFKGAVLNQTSAWWFERTRHIAPNHLLGSPHPNVCVGKKCKVFPIEFVMRGYLTGSTSTSIWKNYEKGTRAYCGHTLPEGMSKNQALPMGNILTPTTKDDLHDELISAEEIVSSNRMSQQDWDECSRLAHALFRFGQEAAAERGLILVDTKYELGKDADGNIILVDEIHTPDSSRYWVKETYEGNISQGREPENIDKEFLRRWYTQHCDPYKDESVPDAPRELVAELSRRYVMLYEIITGQDFVFPSEDGPPVDERMSSSVSNFL 1148
            E T+ Y GRI+A ++++          +  L G SK+T GKVRD Y  DD + L+TTDRQSAFDR LA +PFKG VLN TSAWWF +T+HI PN ++  P PNV + KKC+VF IEFV+RGY+TGSTSTS+W  Y  G R YCG+ L EG+ KNQ L   N+LTPTTK++ HD  I+  EIVS   M+Q+DWD CS+ A ALF FGQ+ AAE GLILVDTKYE+G+D DG I L+DEIHTPDSSRYWV ETY+  +S G+EP+NIDKEFLR W+  +CDPY D+++PDAP ELVAELS RY+ LYE ITG+ F FP + G P+ ER++ ++ + L
Sbjct:    5 ESTEHYKGRIKAELNNTL--------TETSLSGRSKKT-GKVRDQYDLDDQVALITTDRQSAFDRVLASIPFKGQVLNLTSAWWFSQTKHIIPNQVISVPDPNVTLAKKCEVFSIEFVVRGYITGSTSTSLWTVYNNGDREYCGNILSEGLKKNQKLE-ANMLTPTTKEEHHDRPIAPPEIVSEGWMTQEDWDYCSQKALALFAFGQQKAAEHGLILVDTKYEMGRDTDGTIRLIDEIHTPDSSRYWVAETYDERMSAGQEPQNIDKEFLRLWFVDNCDPYNDKTLPDAPDELVAELSSRYIYLYETITGKAFPFP-DTGKPIQERINENLKDVL 328
[Close]
BLAST of mRNA_Ecto-sp6_S_contig102.866.1 vs. uniprot
Match: A0A358AAV0_9BACT (Phosphoribosylaminoimidazole-succinocarboxamide synthase n=1 Tax=Candidatus Magasanikbacteria bacterium TaxID=2026717 RepID=A0A358AAV0_9BACT)

HSP 1 Score: 397 bits (1020), Expect = 6.600e-132
Identity = 192/323 (59.44%), Postives = 236/323 (73.07%), Query Frame = 3 
Query:  183 VDDSARQCIAESRLDQQLVGHSKRTVGKVRDTYICDDAIVLVTTDRQSAFDRQLARVPFKGAVLNQTSAWWFERTRHIAPNHLLGSPHPNVCVGKKCKVFPIEFVMRGYLTGSTSTSIWKNYEKGTRAYCGHTLPEGMSKNQALPMGNILTPTTKDDLHDELISAEEIVSSNRMSQQDWDECSRLAHALFRFGQEAAAERGLILVDTKYELGKDADGNIILVDEIHTPDSSRYWVKETYEGNISQGREPENIDKEFLRRWYTQHCDPYKDESVPDAPRELVAELSRRYVMLYEIITGQDFVFPSEDGPPVDERMSSSVSNFLK 1151
            + ++   C+ E+ L         + +GKVRD+Y   D ++L+TTDRQSAFDR LA +PFKG VLNQTSAWWFE+T+HI PNH+L  P PNV VGKKCKVFP+EFV+RGY+TG+T TS W NY KG R +CG+TLPEGM KNQ  P   I+TPTTK D HD  I+  EIVS   MSQ DWD  S  A  LF+FGQE A +  LILVDTKYE GKD DGNI+L+DEIHTPDSSRYW+ +TY    S  +EPENIDKEFLR W+T++CDPY D+ +P AP +LV ELSRRY+ LYE+ITG  F FP  D   ++ER+S ++  F+K
Sbjct:    7 IQNNLSNCLTETNL-----ALPNKKIGKVRDSYDLGDKMILITTDRQSAFDRILASIPFKGQVLNQTSAWWFEQTKHIVPNHVLEIPDPNVTVGKKCKVFPVEFVVRGYITGTTDTSAWVNYNKGIREFCGNTLPEGMKKNQKFPEP-IVTPTTKADDHDRSITPTEIVSEGLMSQADWDYVSSKALELFKFGQETALKNSLILVDTKYEFGKDVDGNILLIDEIHTPDSSRYWIAQTYADKFSNDQEPENIDKEFLRLWFTKNCDPYNDKVLPPAPDDLVIELSRRYIQLYEMITGLKFEFPEGD---INERLSKNLEPFIK 320
[Close]
BLAST of mRNA_Ecto-sp6_S_contig102.866.1 vs. uniprot
Match: A0A662WY88_9STRA (Phosphoribosylaminoimidazolesuccinocarboxamide synthase n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WY88_9STRA)

HSP 1 Score: 398 bits (1022), Expect = 7.840e-132
Identity = 198/352 (56.25%), Postives = 257/352 (73.01%), Query Frame = 3 
Query:  117 LAKVVADAQEKTKKYLGRIEAAVDDSARQCIAESRLDQQL--VGHSKRTVGKVRDTYICDDAIVLVTTDRQSAFDRQLARVPFKGAVLNQTSAWWFERTRHIAPNHLLGSPHPNVCVGKKCKVFPIEFVMRGYLTGSTSTSIWKNYEKGTRAYCGHTLPEGMSKNQALPMGNILTPTTKDDLHDELISAEEIVSSNRMSQQDWDECSRLAHALFRFGQEAAAERGLILVDTKYELGKD-ADGNIILVDEIHTPDSSRYWVKETYEGNISQGREPENIDKEFLRRWYTQHCDPYKDESVPDAPRELVAELSRRYVMLYEIITGQDFVFPSEDG---PPVDERMSSSVSNFLKS 1154
            ++ VVA+A+ +T+ Y+ +I+ A      QC+ ++ L      +   ++ VGKVRD Y+  + ++LV+TDRQSAFDR LA VPFKG VL  TS WWF++T+HI PNHLL  PHP+  + KKC VFP+EFV+RGY+TGSTSTS+W NY  G+R +CG+ L +G  ++Q LP  N++TPTTKDD HDELIS EEIV S RM+QQ WD CS+ A  LF FGQ+ AA+RGLILVDTKYE G D A G I+L+DEIHTPDSSRYW+  +Y+  ++ G+ PENIDKEFLR W+ +HCDPYKDE +P+AP ELV ELSRRY++LYE+ITG  F FP+  G   P  D+ +  SV   L S
Sbjct:    1 MSAVVAEAEARTQSYVAQIDLA------QCLTQTSLAALTAELPAFRQIVGKVRDVYVFANQVLLVSTDRQSAFDRALASVPFKGRVLTLTSVWWFQQTKHIVPNHLLAVPHPSAMLCKKCTVFPVEFVVRGYITGSTSTSMWTNYRNGSRDFCGNKLVDGYVQHQKLPQ-NLVTPTTKDDEHDELISGEEIVRSGRMTQQQWDYCSQKALELFAFGQQQAAQRGLILVDTKYEFGMDEATGEILLIDEIHTPDSSRYWLAASYDERMAAGKSPENIDKEFLRLWFKEHCDPYKDEELPEAPVELVRELSRRYILLYELITGDRFQFPAPAGNGNPTADQELLDSVRQALIS 345
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig102.866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G980_ECTSI1.780e-26399.18Phosphoribosylaminoimidazolesuccinocarboxamide syn... [more]
A0A836C963_9STRA5.350e-15763.74Phosphoribosylaminoimidazolesuccinocarboxamide syn... [more]
A0A4D9CWR3_9STRA4.870e-14563.66Phosphoribosylaminoimidazolesuccinocarboxamide syn... [more]
A0A225VTJ2_9STRA2.460e-13458.91Phosphoribosylaminoimidazolesuccinocarboxamide syn... [more]
A0A0P1AAI7_PLAHL6.980e-13457.96Phosphoribosylaminoimidazolesuccinocarboxamide syn... [more]
D8LZN9_BLAHO1.450e-13358.63AIRC domain-containing protein n=1 Tax=Blastocysti... [more]
A0A2D4CG46_PYTIN1.430e-13257.31Phosphoribosylaminoimidazolesuccinocarboxamide syn... [more]
A0A357FLP9_9CHLR5.950e-13258.51Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
A0A358AAV0_9BACT6.600e-13259.44Phosphoribosylaminoimidazole-succinocarboxamide sy... [more]
A0A662WY88_9STRA7.840e-13256.25Phosphoribosylaminoimidazolesuccinocarboxamide syn... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig102contigEcto-sp6_S_contig102:480766..489676 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score741.9
Seed ortholog evalue1.5e-211
Seed eggNOG ortholog2880.D7G980
Model size1763
KEGG rclassRC00064,RC00162
KEGG koko:K01923
KEGG ReactionR04591
KEGG Pathwayko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130
KEGG ModuleM00048
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006163,GO:0006164,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009719,GO:0009725,GO:0009733,GO:0009987,GO:0010033,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0034641,GO:0034654,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046040,GO:0046390,GO:0046483,GO:0050896,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Exons9
EggNOG free text desc.phosphoribosylaminoimidazole carboxylase activity
EggNOG OGsCOG0152@1,KOG2835@2759
Ec32 ortholog descriptionATP-grasp fold, subdomain 2
Ec32 orthologEc-13_002940.1
EC6.3.2.6
Cds size1101
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig102.866.1prot_Ecto-sp6_S_contig102.866.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig102 480834..489082 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348738.5466707-UTR-Ecto-sp6_S_contig102:480765..4808331682348738.5466707-UTR-Ecto-sp6_S_contig102:480765..480833Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig102 480766..480833 +
1682348738.6495667-UTR-Ecto-sp6_S_contig102:489082..4896761682348738.6495667-UTR-Ecto-sp6_S_contig102:489082..489676Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig102 489083..489676 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348738.5591977-CDS-Ecto-sp6_S_contig102:480833..4810311682348738.5591977-CDS-Ecto-sp6_S_contig102:480833..481031Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig102 480834..481031 +
1682348738.5685232-CDS-Ecto-sp6_S_contig102:481659..4817731682348738.5685232-CDS-Ecto-sp6_S_contig102:481659..481773Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig102 481660..481773 +
1682348738.577174-CDS-Ecto-sp6_S_contig102:484082..4841781682348738.577174-CDS-Ecto-sp6_S_contig102:484082..484178Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig102 484083..484178 +
1682348738.5867496-CDS-Ecto-sp6_S_contig102:484680..4848511682348738.5867496-CDS-Ecto-sp6_S_contig102:484680..484851Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig102 484681..484851 +
1682348738.5958767-CDS-Ecto-sp6_S_contig102:485852..4859721682348738.5958767-CDS-Ecto-sp6_S_contig102:485852..485972Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig102 485853..485972 +
1682348738.6049225-CDS-Ecto-sp6_S_contig102:486716..4868391682348738.6049225-CDS-Ecto-sp6_S_contig102:486716..486839Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig102 486717..486839 +
1682348738.6142697-CDS-Ecto-sp6_S_contig102:487572..4876531682348738.6142697-CDS-Ecto-sp6_S_contig102:487572..487653Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig102 487573..487653 +
1682348738.623244-CDS-Ecto-sp6_S_contig102:488417..4885221682348738.623244-CDS-Ecto-sp6_S_contig102:488417..488522Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig102 488418..488522 +
1682348738.6321754-CDS-Ecto-sp6_S_contig102:488989..4890821682348738.6321754-CDS-Ecto-sp6_S_contig102:488989..489082Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig102 488990..489082 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig102.866.1

>prot_Ecto-sp6_S_contig102.866.1 ID=prot_Ecto-sp6_S_contig102.866.1|Name=mRNA_Ecto-sp6_S_contig102.866.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=367bp
MATAVASADQQAKALSLAKVVADAQEKTKKYLGRIEAAVDDSARQCIAES
RLDQQLVGHSKRTVGKVRDTYICDDAIVLVTTDRQSAFDRQLARVPFKGA
VLNQTSAWWFERTRHIAPNHLLGSPHPNVCVGKKCKVFPIEFVMRGYLTG
STSTSIWKNYEKGTRAYCGHTLPEGMSKNQALPMGNILTPTTKDDLHDEL
ISAEEIVSSNRMSQQDWDECSRLAHALFRFGQEAAAERGLILVDTKYELG
KDADGNIILVDEIHTPDSSRYWVKETYEGNISQGREPENIDKEFLRRWYT
QHCDPYKDESVPDAPRELVAELSRRYVMLYEIITGQDFVFPSEDGPPVDE
RMSSSVSNFLKSHREA*
back to top

mRNA from alignment at Ecto-sp6_S_contig102:480766..489676+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig102.866.1 ID=mRNA_Ecto-sp6_S_contig102.866.1|Name=mRNA_Ecto-sp6_S_contig102.866.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=8911bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:480766..489676+ (Ectocarpus species6 EcLAC_371)
GTAGGTGGTTGCGTGCCGTTGGGACCAAGAGCACCCCCCCCGCACACACA
CCCGTTGCCTATCTGACCATGGCGACTGCTGTGGCCTCGGCAGATCAGCA
GGCGAAGGCGCTATCCCTGGCGAAGGTGGTTGCGGACGCCCAAGAGAAGA
CCAAGAAGTACCTGGGCAGGATCGAGGCCGCGGTTGATGACTCGGCTCGC
CAGTGCATCGCGGAGTCTCGGCTGGACCAGCAGCTTGTCGGGCACAGCAA
GAGGACCGTCGGAAAGGTACGTTCAATTCATGTGTGTGCGCATCGTTTTT
CGTGAACTTCTGTCTGACGAACATGCTCGTACAGACTATTTTTGCACCCG
AGGCTGAGTACCGTATACTCGCGGTAGTATGCATTCCTGGCAGTTTGGCT
CCCAATAAACCTGTCCGATGCCATGATGCACGAGCCCAGAGAAATTGCTG
CACTGCACATACGAGGGATGCTGCACACAGACTGTAGCACGGACGGCGCT
TTGCTGTTTTGACGGGAATCGATCCAAGACGTCGGTGGCCGCCACCGAGT
TTCAACATCTCCACACCGCATGTTGCATAAGATACCACACCCCCTAAACA
AGGGTTCAAAGCCCTTGTATAATTAAGGAATAATATATTTGGATAAATTG
CCCGGTGCGTACGACGAAGCGAATCCCAAGAGCCCAAAGACAAGTTCTCG
GCCAGCTCTCCACGAGCACGTTCTAGGTCCACCATCTTCGGTGCCGTCAC
CGATTTTTTTTTTTTTTCTGAGGAACCAATCGAGCATTAGAAAAATCGGC
CACAAAAACGGTGTGGTATCTTGCGCAATCTGTGTCCAGTACTTTCCTCT
CTCTATTTTTAAACATGACGCGTATTTATTGTATTGGTACGTAGGTGAGG
GACACCTACATCTGCGACGACGCGATCGTCCTCGTGACCACCGACCGACA
GAGCGCGTTCGACAGGCAGCTGGCTAGGGTGCCCTTCAAGGGGGCGGTCC
TCAACCAGGTGTGAACTGGCAGTGCAGCAGTAGTGGTCCCTCGGGTAAGG
ACACCATTTCAGGACACTTGCCCCCCCGTTAAGGACATATGTTTTCACGG
GCATGGTGCCGCAGAATGTACAACTAGGCAGGGTATTAATCTTGTGGACA
CTTCCCCGGCTCAGGGGCACCTGTCTCAACGAAACAACCTACTGGAGTAT
GTGTGTACTCCACCGAGAGACGACTGACTGTATTCTTTTTGTAGATTTGT
GGGCCAGGGGGTTGGCCACCAACTATAATAGCCGGCGGCTGGCGCACTTC
CTCCAACAGCATGATACGGAAGCACTTCTTTGGCTAGCGTAGGTTTGCGC
TGTTTCGTCAAGTCCCCGCTGAATTATCTACACCAATCAGTCTCTATTTT
TGTAAGGAACGCAATCATAAAAACTACTTTTGTGCAGGGATAGATGGCGA
GTTTTCCAACCACCTTGCGTGATGTTCAGCTGCCAGCTGTGTCATGTGGA
TAGCTCGTGGTAGATCGATATGCTTGCTCATGGGTGTACCACGTACGTTT
GCGAAGTCGCAGAGGAAGAAAAAAATTGTTTACATGAAAAACTAACTCCG
CCTCCAACGGAATGACGAAAGTCATCATCCGTAAAAATTGGAACGGTACA
GAGAAGATTAGCATGGCCCCTGGAGCAAGGATGACACGCACGAATCGAGA
GGTGTATCGAAACTTTTTTTCCACTTTTTTTTTTCATGGTGAGATTCATC
ATCACAGCAGTAGAAATTCATTTGTATGAAGTACAATACCGCATGAGTCG
GAGAGATGGCACCCCCGTGTTAGTGCTTTAATATTGCGTGTTTCTCTTCA
ACTATTGTAGGGAGGGTGCGAACACCAACCGATACCTCTCAGGAAAGCCC
TCGACGAGACGTTTCCAAAACTACCCTTTTCGGCTGTGGTACCCCCCTGG
TTGTGGAGAAAAACGCTAGAGAAAAACGCTAGAGAAAAACGCTAGAGAAA
AGCGCTCGGGGGTGCCATCTCTCCGACTCTTACGGTACATCCTCTTGGGG
TTCAAGCTATGTTGTATGTTAAGGGTATGTCAGGAGGTGGACGCCCTGCG
GTGAAATATATACTTGCAATAATTTTTTTTCGTCCTGATGTCCACCCCCC
CCCCCCGACAACGACGTTGTGAATCAAGCCGCCGCCCCCGGTGTTTGCCA
TCGGGGTTGGGTTTTCGTCGCTTGGCAGCGATGTTGTACAACAGGCCGAT
CAACTCGTGATCTCAGCAACCAGGTTACCGCTTCTTGTTTTTGCCTCTGG
TTTTCTTTTTTGCGGTAGCGATGAATGATGGTCGAGTAGATGATGTTGTG
CGGGGTCGAGAACCCTCACATCGCGCAAAGGGGATAATCGCACGTTGTGT
TAAATTGGTCAAGTACCCTCGAGGCAATTACACAGGGCTTACAACTGTCT
CTGGAAGTGAAAGCACCAGAAAATGAATTAAGTCATACGCAGCTGTCATC
CGTACGCAAGCAAGTAAGCACAAGATGTTGAACACCCTTAAAAGGATGCA
GCGCACCCTTCATGCGACTCGCCGAATACGTCACGGCGCTTCGCGCTTGG
TGATGTGAGAGCCTGGTCCGGCGAGAACCCGGTGTGCTCCGTCCCGGCTT
TGTAGGGGTGCGAGGCCAATGGTCAAACGACTACGGCATGCACGACTGGG
AGCCTCCCCCCCTTTCTCGGCCGAACGCATGCTATACACGAGCGCATGGT
GGTTCGAGAATACTCGACATATTGTTCCCAACCACCTTCTTCGTCACCGT
GTTATCATTTTTACATGTAGATAGCATGTGGTAGATCGATATGCTTGCTC
ATGGGTGTACCACCTCCATGCCCAGTAGGCGCAGAGGAAGAAAAACATCG
TTCAGATGAAAAACTAATTCCGTCTCCAACGGAATGACGAAAGTCATCAT
CCGTAAAAATTGGAACGATACAGAGAAGATTAGCATGGCCCCTGGAGCAA
GGATGACACGCACGAATCGAGAGGTGTATCGAAACTTTTTTTCCTCCTTT
TTTTTTCATGGTGAGATAGATCATCACAGCTCTCTTATATACAGTATGTG
TTGGTTGGTTCAAGTTGTGTATACATAGGAAGGGTACCTCTGGAGGTGGA
CGCGCCGCGGTAATATTATTTTTTCGACAGTTTTTTTTTCTTTCTGCTTC
TTTTTATTTGCCTCAGTTTTTCAACCCCACGGTACAGTACTGCAATACTC
TCACGTGAACAGACGGCCCCAACACTCCGATACCCCGCCCCCACTCCCTG
CCGAACGCATACTACAGACGAGCGCATGGTGGTTCGAGAGAACTAGACAT
ATTGCTCCCAACCACCTGCTTGGATCGCCGCACCCCAATGTCTGCGTCGG
AAAGAAGTGCAAGGTGAGGTGGACTGCTGGCTGAATGCACAACACAGCAG
TGGGAACGCCTTGTTGATGCCAACCACAGCAGCAGTGGAAATGTGGGCCT
GTTTGTGTAGGAGCGAAAAAATAAAGCTGTTGTTCGCCGCTGTTGGTGTT
CCGGTGCTTATTTCGTTCCATCTCGCCGGTCGCAGCCGTCGTTGTTGTTG
TTGTTTTGTTTCTATATCTGTCGTTGCTGCTGCGGCTGTAGGCGTGGTGG
TGGTCGCCGTTGTTGTTATTGATGTTGTTGTTGTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTTTCTAATTTAATGATGTTTTCTGCGTACTCTGT
TGTTGTTGTTGTTGCTGCTGCTGCTGCCGCTGCTACTTCTGCTGTTGTCG
TGCTGTTATTTTTCTTCCTACCCTGCTACTGCTGCTTGTGCCGCTACTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGACATTGCATGTC
CGGATGTCTTGCCAGGTTTTCCCGATCGAGTTCGTGATGCGCGGCTACCT
AACGGGCTCCACTTCCACCTCCATATGGAAGAACTACGAGAAGGGAACCA
GGGCGTACTGCGGACACACCCTCCCGGAGGGGATGTCCAAGAACCAGGCG
CTGCCCATGGGCAACATCCTGACGCCTACGACCAAGGTACACGCTCGTTG
TGGGGGAACACCCTAAATCCTCTCCCTCGGAAATTCCGAGGCCAACTATC
GTCCGATTCTTCACGAGGTTGACAGTGCTGTTGTGCCCGCTATGACTCGG
GATAAATGGCTATCACCTGTTGGTTTGAACGATCCCGCGGTAGCCCTATT
CGTTTGTTCCCGATATCGTCGGGCCAAGGTTGCTACAGCAGTAGtTTGAG
ACGTTTTTTTAACCGTGGAAAGCCCAGTTTTTTACCCAAAATAGACGACA
GCGTACAGAGTTCGCGCCCGCACATTGAGAAACCGTGCCAATCATGAACT
TCGTGCTAAACATTTCATATACACATCAGAACGTGCGCACCATTTGTGAC
CCCGGTTGAAGAACCCCTTACACAGAGACCTAAAGAAACAACGGATGTTC
GTAACGTGACCCTAGCAACCAAGATCCCCAGACTCGGCCAATACTAAAGG
TTTTTATGCGTATGTGCGGACGGACCGTAGCTGTAGCGATGCAGCACGCT
CATTATTCCATGCGAGTTTGGATGTTTTTGCACCCAGCGAGAAAAAATCG
TGTTCTGTTACGGTCCATTTTTTTTGTCAAGCGCCATGTAGTAGCGGTTC
TTGAAGCCAGGCAAGGCGTGGTCGTTGCTCGACTTGCCCTTCAGGTGCAG
GTTGTTTTAGCTGGCGCCTGGCTGGTTGTCTGGCATGTCGGTAGGGCTCT
GTACGTGGTTGAGCCGCCACCTCCTGGTTTTAAttTTTCCTGGCCGAAAG
ACCTTTTTTTCCAGCTGTTTCGCTTCCAAAATTTCTAAGTTCCAAATCCG
TAGACCGTTGAACCCCGATTTGCGGCCGAGGGAAAAAATTACAAATTTGG
AAAATTTGGAAACTACAGGCACCGTTCGTTCCAAATCTGGAAATCTGGAA
ATCTGGAAAAATTGGACAAAAAGCGCCATGGAGAAACCACTAAAAATATT
GTTCGCGTTTTTTGTTGGTTTTCGCCCAACCTTGCAGGACGACTTGCACG
ACGAGCTGATTAGCGCGGAGGAAATTGTTTCCTCGAACCGGATGTCGCAG
CAAGACTGGGATGAGTGCAGCCGGCTGGCCCACGCCCTGTTTCGGTTCGG
GCAAGAGGTTAGCTACGCCGCACTCTTTTTTGGTGATCGACAACGTAGCA
GTGTACGTTATGGTGTTCAGTGTTGAAGTACGGAATCTGTTTCCCCGAGA
TGGAATCAAAGAAGCCGGGGCTGAACCCCATACAGCAGTGAACGTTACCA
GGAGAGGAAAACGGACGCCTACAGGTGTGCATGTCGGACCTCGCGTTGCA
AGACGTGGCTAGACCATCAACAGCAGTCTTCCGGGCAGGACCCCCTACGC
TATCCCGTGCTCTCACAATACCCTTTTCGCAGGTACACGTCGCAGCGTGT
GCAGTCTAGACAGACTGCTGCTGTAGACTCGCTGCGGTGGTTGGAATGCG
GCCGTTTCGGTGGTAGCACGAACAGCACTTTTGTTGTGGTTGTCGTTGCG
GCTGTCGTCACACGATGATCGTGCCAATCTCTGCTCGGCTGTGGTGACTG
TTGGACAGCCTTGCTTGTATCACTGAAGCGTGCGCCCTCCGTGGGCACGG
CTTGACTACATCAAGATTGATGAGGGAGTGAGGAAAAATATTCGCCAATG
GATTCATGTTGGAGGCCTCTAGGGAAATGAATGGAACAAGGGGTCATTTT
GTTAGTTTTCGCGGTTTTCGATCTCGCCCCCAGAACATCATTACCTCTTG
ATGCAGGAAGCCTTGTCGAATCTGTTGTCAATCGCTTGAGAAACGTGATG
ATGACCGGCTGTACTGTGGGGCTCTGGGTGGGACTGCGCTTGTTCGAGCA
GGCGGCAGCAGAACGGGGCTTGATTCTCGTGGACACCAAGTATGAGCTGG
GCAAGGATGCCGACGGGAACATCATTCTGGTTGATGAGATACACACCCCG
GACTCCAGCCGATACTGGGTGAAGGTGCGGTGTGGTTGCAAATGTCGATA
CTGCGGAGTGGACTCATTAGAGCACGGTAGTGTATCAAAGGCGTGATTAA
AGATTAACAAGAGAACTTGAAAACCTGACCGCCAAACGTGGCGTCTACGA
AGGTCGAATAAACCCACGCAACGGATGTGTTTTTTTAACTCGAGCACCCA
CCGAACCAGACCGAACCAAAATACCAATTCATGGTTTTTGTATACATTCT
TTTTGTCCGGGTTCACGGTGGTGATGGTTGTGGTCCGGAATTGGAAGAGT
GTTCTGAGATAGCTCCGATGTTTCTACTTCTCTCCCTTACCCCTCACGTC
GATAGACCACCTGCAGGGTATCAATCATTCCCCCCCATTCATCTCTCTTG
CCCGAAAACAACGAGCCACCTTCTCTTTTCCCAACACCATAAACTCATCG
CTGCTGTCCTCGGTACGACCTTGCCTCCCTTGTCCACGAGCGCTCGGCTC
CTCTATCATCTCTGGATATTCGATTGATTGATAATGGACTGGAGCGGGGC
GCGAACAACACGCTGACGATGACGAACACCGCAAGCACACCGTTTGCCAC
GGGCGTATTTTTCCGAAGCGAGCATCCAGAAGGGGGGCATCTGTTGGCGA
GGCCACCCTCAGCCCTCTCGCCTCGCAGATGCAATGCACGATATCTCCGG
CCCGCCCTTGACACATTTCTTGGGGGAAATCCTTATCCTCATGTGTGTCG
CTCGCAGGAGACGTACGAGGGGAACATCTCGCAGGGCAGAGAACCGGAGA
ACATCGACAAGGAGTTTCTCCGACGTTGGTACACGCAGGTGAGACACAAT
GAACATTTCGCAGCTAGAGGCGATAAAGAGCAGCAACATAGAAAGGATGC
AGCAGCAGCGGTCCCCGTTTAGGGCCGGATATTGTTGGCCGGTTGCCCTG
TTCAAGGCCGGTGAAATCGCTTGGCACAGATGGGATGTTGAAGTCATCTC
ATACGCACACTCTAAATGAATAATGCCGGGTGGGTGCCCGATATTAAAGG
CCGGCGTTTTCCCTTAGACCTAGCGGCCGTATTCATGGACCTCTACTGTA
TGGAGTTCTGAGCTAGAGAAAGGTTCCAAGAGAGAAGCGCCCTGCCAGTG
CCAGAGAAGGCCTGGCTTGGCGGACGCGTACTGCAGGTCGCATGAGATAT
GTACGACAACCTCCGGACCTGTTTCCGAAGTTCGATTGTGGTGCAGATAA
ACGATGACGGCGCCGAAAGCGGCGGCGCTGGAAATCGTTTCGTCGAGAGC
AGCTTTCCGAAACGCAAAAAATTTGGTTGTGGCATCCGCTTTGGCGTGGA
GTAGTTGGGCTTTGAAAATCGGTCCAAGAGGTTGGGTATGTTGTGCAACC
TGCGGTAGTGCCAATACCGACACACATGTCTCGAGGTATGTTAAGAGCGG
GGAACACGGACACCAATGCACTCCTGCCCCACCTTCGCCCACTACCGCAG
TTTCCGCTTGGGGCCGCTGCTTCGTTGAAATGAACATATTTCCCTCGTCC
ATGGGAAGACCTTAACGATTCGTGATCGTGTCTTGAAACAAATGTTACGC
AGCACTGCGACCCTTACAAGGACGAGAGTGTTCCTGATGCTCCCAGGGAG
TTGGTGGCAGAGCTGTCGCGGCGGTACGTCATGCTCTACGAAATCATCAC
GGGGCAGGTGTGTGTTCGTTGTTGTTGTTGTTGTTGTTGTTGAAAGTGAC
CGTTTTCGTTGTCGTTGTCGTTGCCGTTGCGGTCGTCGTCGCTCGTTGTT
TTTAGAAAGTGAACAAAATGTCACAGAAAGACTGCCCGTTCGAGATATAG
CCTCAGTCACTCGTTGTTTTGTCCGAGCTTTACGCAGTATTGAGACATCT
TGTTGTGCGAGGTATCGCCCCCAAGTCACCCCCCCTCCTCCCCCGTTCAA
TGGTATCTATTGATAATATCAGGCGATTCTTGCTCTCGGTCGAAAACATG
ACACACATCCTCCCTCCCTCTCCCCAACACCGAAACCTTCATGGTGTGTT
CCCGACTACTTGTAAGGAAACTGTATTTCCGACTACGAATTTTGGAAGAA
AGGGAAGTGCGTTGCAACGCCATATCTCATCATCCCCCCCCCCTGTCCCG
ATTTTGTTTTTTCCTTTCCTTCAGGATTTCGTGTTCCCGAGCGAGGACGG
GCCTCCCGTGGACGAGCGAATGTCGTCGTCCGTGTCGAACTTTTTGAAGT
CCCATCGGGAGGCGTGACAAGGACTTCCCGTGCTTTTTTGTCCATGCGTC
CGTGCTTCGAGTCCACGTGTCGTGTGCGTGGGGCATGCGATGGCCCGGAT
TTTGTCGGACTCGATACGTTTGTCAAGGCACACCGAGCGATGCTGTGTGT
TTGGAAGGCTCCCTACCCCGTTGCTAAGACGTGTCCGAGGTCGGCGCCCG
GTGGTGCTTGCAATGTAAAAACAGAAGATGGGAGCGATGTATGCATGCCG
TTGAAGCGTTGGGCTATCTCATCCTTCTGGTTTTCTTGTTCCGGTAAGAA
TTAAACACACCAAGCTTCGAGGCCGTGGGTTCACCTTTACCATACGACCT
CAAAGGCGAGCGACTTAGGTAGGGGGTGGGTAGCGCAGCACGGGCGGAGG
AGTCCTGTTTCTCTCTGAAAAAGGTTCCATCTGTTGTGGCCAGATTGAGC
GCTGGTTCTTTTTCCTGGGACCATGATGTCCTGTTTCTGGTGAAAGCTTG
AGCCTGTAGTTTTCTTTTAGCTTGACTCCGGGCCCGCTCTGTATCGACCC
TAGATCGAATTCCCACTTGGAACGTGAAAGGGGGCCCGGGAGAGCTACAA
AAGCCGCGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig102:480766..489676+

>mRNA_Ecto-sp6_S_contig102.866.1 ID=mRNA_Ecto-sp6_S_contig102.866.1|Name=mRNA_Ecto-sp6_S_contig102.866.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1101bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:480766..489676+ (Ectocarpus species6 EcLAC_371)
ATGGCGACTGCTGTGGCCTCGGCAGATCAGCAGGCGAAGGCGCTATCCCT
GGCGAAGGTGGTTGCGGACGCCCAAGAGAAGACCAAGAAGTACCTGGGCA
GGATCGAGGCCGCGGTTGATGACTCGGCTCGCCAGTGCATCGCGGAGTCT
CGGCTGGACCAGCAGCTTGTCGGGCACAGCAAGAGGACCGTCGGAAAGGT
GAGGGACACCTACATCTGCGACGACGCGATCGTCCTCGTGACCACCGACC
GACAGAGCGCGTTCGACAGGCAGCTGGCTAGGGTGCCCTTCAAGGGGGCG
GTCCTCAACCAGACGAGCGCATGGTGGTTCGAGAGAACTAGACATATTGC
TCCCAACCACCTGCTTGGATCGCCGCACCCCAATGTCTGCGTCGGAAAGA
AGTGCAAGGTTTTCCCGATCGAGTTCGTGATGCGCGGCTACCTAACGGGC
TCCACTTCCACCTCCATATGGAAGAACTACGAGAAGGGAACCAGGGCGTA
CTGCGGACACACCCTCCCGGAGGGGATGTCCAAGAACCAGGCGCTGCCCA
TGGGCAACATCCTGACGCCTACGACCAAGGACGACTTGCACGACGAGCTG
ATTAGCGCGGAGGAAATTGTTTCCTCGAACCGGATGTCGCAGCAAGACTG
GGATGAGTGCAGCCGGCTGGCCCACGCCCTGTTTCGGTTCGGGCAAGAGG
CGGCAGCAGAACGGGGCTTGATTCTCGTGGACACCAAGTATGAGCTGGGC
AAGGATGCCGACGGGAACATCATTCTGGTTGATGAGATACACACCCCGGA
CTCCAGCCGATACTGGGTGAAGGAGACGTACGAGGGGAACATCTCGCAGG
GCAGAGAACCGGAGAACATCGACAAGGAGTTTCTCCGACGTTGGTACACG
CAGCACTGCGACCCTTACAAGGACGAGAGTGTTCCTGATGCTCCCAGGGA
GTTGGTGGCAGAGCTGTCGCGGCGGTACGTCATGCTCTACGAAATCATCA
CGGGGCAGGATTTCGTGTTCCCGAGCGAGGACGGGCCTCCCGTGGACGAG
CGAATGTCGTCGTCCGTGTCGAACTTTTTGAAGTCCCATCGGGAGGCGTG
A
back to top