mRNA_Ecto-sp6_S_contig102.861.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp6_S_contig102.861.1
Unique Name	mRNA_Ecto-sp6_S_contig102.861.1
Type	mRNA
Organism	Ectocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp6_S_contig102.861.1 vs. uniprot

BLAST of mRNA_Ecto-sp6_S_contig102.861.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp6_S_contig102	contig	Ecto-sp6_S_contig102:441440..441547 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species6 EcLAC_371 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Model size	108
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
Cds size	108

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682348738.245755-CDS-Ecto-sp6_S_contig102:441439..441547	1682348738.245755-CDS-Ecto-sp6_S_contig102:441439..441547	Ectocarpus species6 EcLAC_371	CDS	Ecto-sp6_S_contig102 441440..441547 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp6_S_contig102.861.1	prot_Ecto-sp6_S_contig102.861.1	Ectocarpus species6 EcLAC_371	polypeptide	Ecto-sp6_S_contig102 441440..441547 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp6_S_contig102:441440..441547+
coding sequence from alignment at Ecto-sp6_S_contig102:441440..441547+

protein sequence of mRNA_Ecto-sp6_S_contig102.861.1

>prot_Ecto-sp6_S_contig102.861.1 ID=prot_Ecto-sp6_S_contig102.861.1|Name=mRNA_Ecto-sp6_S_contig102.861.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=36bp
MYVTAYSTSLCVSRLTSVFPEPSCPPKLPDAVVVW*

mRNA from alignment at Ecto-sp6_S_contig102:441440..441547+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp6_S_contig102.861.1 ID=mRNA_Ecto-sp6_S_contig102.861.1|Name=mRNA_Ecto-sp6_S_contig102.861.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=108bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:441440..441547+ (Ectocarpus species6 EcLAC_371)
ATGTATGTCACGGCCTACAGTACAAGCCTATGCGTCTCACGACTTACCTC
TGTCTTTCCCGAGCCCTCCTGTCCTCCAAAGTTACCCGACGCTGTCGTCG
TCTGGTGA

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig102:441440..441547+

>mRNA_Ecto-sp6_S_contig102.861.1 ID=mRNA_Ecto-sp6_S_contig102.861.1|Name=mRNA_Ecto-sp6_S_contig102.861.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=108bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:441440..441547+ (Ectocarpus species6 EcLAC_371)
ATGTATGTCACGGCCTACAGTACAAGCCTATGCGTCTCACGACTTACCTC
TGTCTTTCCCGAGCCCTCCTGTCCTCCAAAGTTACCCGACGCTGTCGTCG
TCTGGTGA