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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 2665 |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Cds size | 1008 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1682348737.8897147-UTR-Ecto-sp6_S_contig102:319476..321007 | 1682348737.8897147-UTR-Ecto-sp6_S_contig102:319476..321007 | Ectocarpus species6 EcLAC_371 | UTR | Ecto-sp6_S_contig102 319477..321007 - |
| 1682348737.9263434-UTR-Ecto-sp6_S_contig102:324824..324950 | 1682348737.9263434-UTR-Ecto-sp6_S_contig102:324824..324950 | Ectocarpus species6 EcLAC_371 | UTR | Ecto-sp6_S_contig102 324825..324950 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1682348737.8984745-CDS-Ecto-sp6_S_contig102:321007..321047 | 1682348737.8984745-CDS-Ecto-sp6_S_contig102:321007..321047 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig102 321008..321047 - |
| 1682348737.909837-CDS-Ecto-sp6_S_contig102:322502..322614 | 1682348737.909837-CDS-Ecto-sp6_S_contig102:322502..322614 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig102 322503..322614 - |
| 1682348737.9186237-CDS-Ecto-sp6_S_contig102:323968..324824 | 1682348737.9186237-CDS-Ecto-sp6_S_contig102:323968..324824 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig102 323969..324824 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig102.855.1 >prot_Ecto-sp6_S_contig102.855.1 ID=prot_Ecto-sp6_S_contig102.855.1|Name=mRNA_Ecto-sp6_S_contig102.855.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=336bp
MPRGTQSATTMQPAVRQHLQALCAEGEDFLTRFSTALHHDAQRLAAEVHQ
PITEEDLKHEVTAMADTLKGWIQAPSSGGLAQFVLPRLFRACLEEVAERY
KFIRSIFFPPGASTTNTTNTAMHDHIAEHHEALFHLTPGDEQEKAIARIL
SSVGNYLETRRAFPEQEVAQVVWSGDLDKVAVAYLRIVVCASIQDPAVRF
EGDNNAQRATAAATSTSNSQTDRGVNVVRFSPELHSDPVCSDHGKIMNRR
CVVIFPAILRENASRLTRGYTLRYNAKEDKKHPHLGTSSSLAAPSGGHQG
DRYSTPVVNDLVSIEGTAEAQARNSTGRANGEKKP* back to topmRNA from alignment at Ecto-sp6_S_contig102:319477..324950- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp6_S_contig102.855.1 ID=mRNA_Ecto-sp6_S_contig102.855.1|Name=mRNA_Ecto-sp6_S_contig102.855.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5474bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:319477..324950- (Ectocarpus species6 EcLAC_371)
CGAACAACGACGCGGCCAGTGATTGCGCCACCCGTCTTCCAAGTACCGTG
CTGCACTTTTTGTGCGCGACCCTGAGCAGCAGTGGTACATATAGTCGTGT
GAATCAACCCCTCCCACCGGTGCCAAATGCCTCGGGGAACACAGAGCGCG
ACGACGATGCAACCCGCCGTCCGCCAACATCTCCAAGCCTTGTGTGCGGA
AGGGGAGGACTTTCTCACGAGATTCTCCACTGCACTCCACCATGACGCCC
AGCGGCTAGCAGCCGAGGTCCATCAACCCATCACGGAGGAGGACTTGAAA
CACGAAGTGACAGCGATGGCCGACACCCTGAAGGGCTGGATTCAAGCACC
AAGTTCCGGCGGGCTCGCCCAGTTTGTGCTACCACGGCTGTTCCGCGCGT
GCTTGGAAGAGGTAGCGGAACGTTACAAATTTATCAGGAGCATTTTTTTT
CCGCCGGGGGCATCGACGACCAACACCACCAACACCGCCATGCATGACCA
CATTGCCGAACACCACGAGGCACTCTTCCACCTGACACCGGGCGACGAGC
AAGAAAAAGCCATCGCGCGCATTCTCAGCAGTGTTGGCAACTATCTTGAA
ACCCGCCGCGCTTTCCCCGAACAGGAGGTGGCGCAGGTCGTTTGGAGCGG
CGATCTGGACAAGGTGGCGGTAGCCTATCTGCGCATCGTGGTTTGTGCGA
GCATTCAAGACCCTGCTGTACGCTTCGAAGGCGACAACAATGCTCAACGA
GCAACTGCAGCAGCAACTTCGACGAGCAACAGCCAAACGGACAGAGGCGT
GAACGTTGTCCGTTTTTCCCCCGAACTCCACTCGGACCCTGTGTGCAGCG
ACCATGGTAAAATAATGAACCGACGGTGCGTGGTGATCTTTCCCGCCATC
CTTCGGGAAAACGCGTCGAGATTGACCAGAGGCTACACCTTGCGCTACAA
CGCGAAGGAGGACAAAAAGCATCCCCACCTAGGTATGAAAGGCCTGCCAC
CCACCAGTTATCAACGGCATAGACTAATGTACTCGGATCACATTCGATGG
ATACGAATTCGTCACGCAACCATTTCGTTCAACGACAACCTACTCACAAC
CGTCCTATGATATCCATCCCTCTCGAATCATTTTGCATGTTTTTCGTTAC
TTGATCATCCTTCTTCGAATCACTACAACATTAGACTGTACACAACATTA
GCCGCCGGTTGAGGGTTCTCCATCCGATATTTCCGCTATTTCACGCAGAT
TAATGCAACTGTCATTGAGGGGGAATGCTATGGAATATTGGCGTACGTCC
TGCACTAGCCAACGTTCAGTAGCATTGCTCTCTTTTGTAGATATGATATG
TTTCGGTTCATAGGTAGCGCACCTGAATGCGGAGGAATTGCTGCTGCTGT
AGCATTCTCTGTGGGTAATATCTCGAATGGGTAGTCTTTCTGTGCGTGTG
TTTATTTTTGCTTAATTCTCTGCTCGAGGGATCGTGTGTCTCTCACTCTC
GCATGGACTTCGCTGGATAGTCATAGCTCTTAGCTTTCCTGGTCATCTCG
AGAGAACTGCCGTCATCTGGACCTCTGCATTCTCTGTAGATCATTCTGTG
TTTGCTGGCGCTCTAAGCGCCAGCAGTGTTACAACACAACATATCATCCC
GTCTCAACGCAGCTAACGTCGAAAGGCACAGTCTTACCCACGTGTCAGGG
GTATCTCACCCGATATCAGCAACATATTTGATGTATGCCAACCTCGGCAA
CCTATAGTCTAGTCCCCAAAAACATGTCGGGTTTCAGTATGAAAATATGA
CTGCTGCAATAAACCCAGCACTGTTAGACTAGGCCACAAGCTTTGCTAAA
GTTTGCGCACAGTTTGCCGCACTTTTATCTACTGGAAGCTGTTTCAGTTT
TTTTGTTGCTGAAATCGAGGCTTAGACTGTGATGGGGCACCCCATGGAGC
AATCTACAATATTCATGATCTTTCCATCGGCATCCCACGGAACACGAGGT
TGGTTTGGGCATTTCAAGTTCCATGAAGTCCCCATGCGCTGCTCATGGGA
GATTCGTTGTGTCTTGAGCAGCAAACTGCCGAACGTTTGCAAGACAACCG
TGATTTTTTCTTCAATTCAAGGTGTACTGTAGTCACCCGCCCTCGTTGGA
CATAATGTGAGTGACCGTCCTGCCTGAAGTTGCGTTCGAACACCCAAAAT
AGCTGAATCACACACGGTTGGCCGGTTGCGGCAGGCTACAACCCCCCCCA
AGCAAGGATATGTGTGCCGAATATTTTGCAAAGTGACTACTGTACGCTAT
GATCGTTTGCTTGGCTGGTACTGTCCTCGCACAAAGGGACGTCCTCTTCA
CTCGCTGCCCCCAGTGGTGGTCACCAAGGGGACCGCTATTCCACACCGGT
GGTAAATGACCTAGTCTCCATTGAAGGAACTGCTGAAGCTCAAGCAAGGT
ATGCTTTTCCCGGTTCTTCCGGTCACGTTCTTGGTTGGCATTTTGTCGTG
AAGTTCGGAGTACTTTTCAACGTTGACATACTGATGATACGCAGATCGAA
ACGGGCAAAAAGATACAGGAGTTACCGTTGTTGCCAGCAAAAGCGATCAA
CGCCCAACGTTTAGTACTCACCAAGATCTCACGCGATTTCTCGAGTTGGA
CCTTCTCATTTCTGATCGAGATTTAACCGTTCCTTCTTTCCGTCTTCCTG
ATTCTCTTTGGCCATGTTCAGTTTCTGAACCAAGGTGAATTGATGGATCG
AAAGACTCTTCCAAATACATTAACCGGAACTAACAATAGAAGCTGTGCTT
TCTGACACACGGAACTGGGGTACAGGTGTCAACTTGGACCAACAACTGTA
GAACATGTGGCATCATGGATGGACGAATAAACTCGTTGTTCGAAATTGCG
AAATACCTTTGCACCCCCAGTTGTGCAAAACATGCATATTGTCATCAATA
ATGTCCAGTCTGATCAGTATTGAGCCATATCGAATTGTATATAGACTGTT
TCTGTCAATCTTTTTGCTGACCTCGTTTGAATTTTGAATGAACAACCCTG
AATTTCGACATTCTGGGACGCCCACGCCTTCAGCAGGAGCATTGCCCGTT
TCACTGTGCTGAAACGAGGCGTTGTATTCTAGCTCCGCATCTCAGACTTA
ATTTCATTGGATGGAATCTTCGAGAACATGAAACGTTCAAACAAGAGTTT
GGTACCAGAGTGAATACAGTGTCACGGACCAAGAGGCTTCCGGACTTTCA
TGGGCTCATTACTTGTGTTGTAGGCACGCACAACAGCACAAGCGTCCCGA
TTACCTCGCGGCGGCAAAAAATCGTTCCGCGCTCCGGAACTGCGTCCGTA
GCTGTTTATTCCTGGATATCTGACACCAACCGCCTTGTTGCACATTGGGC
ATTGCCAACGTTTGTGGGACAACATCTGAAATGCATCAAGTCGTGCTTTG
CGTTTACTCGTACGTAAAGGACCACAACACCGCTGAACAGTTCGACCGGA
ATCTCGTCACATTCGGTTGACCAATAAGCGTTTTCGCCCCCGCGGACTCC
GCCCGAGGATTTATTCGAGTCAAAAGAATTTGGTTCGTCTGACACGACGA
TTGGACGTGAAACGTGTAGAGATTGGAAGAGATCTCGTGGTTGAGAACCA
TCCGTGGTTCACGCCGAAACGTTCAGTATGTATGTCACTAGAGGATTGAG
ACCTCTTTCGATCAGGGCGGTTGTACGCCAACGGAGTTTGCTCAACGACG
CGTTCGCGAACCAGCAGACGAGCGCGTCGTTGGCCGCGGCGTATTCACCT
GACCTAGTCTGGGACACGTCTGATCAACAAGTCGACCGTCGTCATGACAC
CAAAGTTTGTCGGACACGACACCAACGATTCTTCTCCACACGCTAAAACA
CAGGAACAGTACCGGAAGGGCGAATGGCGAAAAGAAGCCGTAGGTGCCTT
GAACACGACGTTGTTCATCTCAAGGGTGAGGTAAGCGCTAGAGGTCCGTA
GTGCGGGGTGGCCTGTGACACGACAAGCGTACAGGACCCATCTACAAACC
TTAGGTGTGACTTTCATGAACAACAACAATGGATTGATGGTGACTGTTGG
GAATGAGTTCCTAGTCTGCCGATGAGTTTTGTCCTGTTTGTGGGCGATAC
CACTTAAAATAGTCGGGTCTTCACAAAGAACACAAAAATGAGCAATTCTA
TGTAGCGTAGGGGTTCGAACATGGGCAAGGTGAAGAAAGTCAAGACTTCG
AAACACTCTCTACTGCTGGCGACCAACTCGACCTACTGCTATTGTTTCAA
CCTGGAACACGTAGAACCGTGATAGTCAGTCGATTGCCGACATGATCGTG
GTGACCAAAATGCTTTGTTGATTCGTGCCGCTCGCTGCCATCGAATTCAG
GTGCCGTTCATCTTATGCCCGGAGCTCCACCTTTGAGGCAGAGAAGCCGA
GCCTAGTACAACAACGTGGAAAATATATACGTACCACACCATCCGCGCAT
TTCCCATGTCAAACACGTCTGACTCATGCCTCTGACGAAACACAATCGCT
GTCCTCTCCGTTCGATCGCTTCCTGACCAATCTTGCAGGAATGATGGCGT
CGGCCAAACGAATGGTTCCAGGCCCCAGGACCAAGACTCTGCCGTCATCA
ATGAGCAGCCAATCGAACGAACCTCCGCCGCAGTTCACTCCGTTTTGGGG
CATGGGAATGAAACGCGTGACCATTTTGGTGATGGTCAACCCCCCCCCAC
GAGCATCGACCTCAGTAGTTTGGTGTCTAGGTTCCTCGTAGCCTCATGTA
CCCGAAACACGTGGTGGATTGAATCACCTCTTGCTCCCGTCGTTCGTGTA
GACAATGCTCTATTGTTGTAGCTTTGACTCGCTTTCTTTTGCATGCAAGC
ACTTCGACGCGTCTTGCATGGTGATATCCGCATCTTTGCCATGGTGGCCT
TCGATTCTGCCAAACGTGTAATGTTCGGCGCCGTTGCATCCTGTCCTTTC
GTGCGTGCCTCACACATCCACCGTATCGGCAACAAGAGGGCGAGTAATAG
CAAATGTAGGCGTACGGTGAATTGCGGAATAGTTTATCGAAGTGTCTCAT
TGATGATGCCAATGCTTGTTTCGCCCGCGCGTCGTAATACGATTTGTTGA
GCGTTTTCAATATTGCAGCTACGCTCAATGTTCGGCTTTGTATACGTTTG
GTCGTCTGACCAACTGAACGTGTCAAGCGAGTCACTCATACATCGCCCAC
CCCATGATGTGTCGGACAAATAGAGGGTGTTTCACGTGCCTCGTGAACGT
TCTGGTCTAGAACGCAGCATTCTCTCTCCGTGAGCACATATTGTCCGCAT
GCGCTCGCTCGTCTCGGTAGTTCTTCCTTCCTCCTGTGTTTAGGTGTCGG
CTGCACGAGTCAATGAGACAGATGGACCGAAGAAGTTCAGATCGGTTGAC
GAGCTGCAGATCCGTGATCCCCCC back to topCoding sequence (CDS) from alignment at Ecto-sp6_S_contig102:319477..324950- >mRNA_Ecto-sp6_S_contig102.855.1 ID=mRNA_Ecto-sp6_S_contig102.855.1|Name=mRNA_Ecto-sp6_S_contig102.855.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1008bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:319477..324950- (Ectocarpus species6 EcLAC_371)
ATGCCTCGGGGAACACAGAGCGCGACGACGATGCAACCCGCCGTCCGCCA
ACATCTCCAAGCCTTGTGTGCGGAAGGGGAGGACTTTCTCACGAGATTCT
CCACTGCACTCCACCATGACGCCCAGCGGCTAGCAGCCGAGGTCCATCAA
CCCATCACGGAGGAGGACTTGAAACACGAAGTGACAGCGATGGCCGACAC
CCTGAAGGGCTGGATTCAAGCACCAAGTTCCGGCGGGCTCGCCCAGTTTG
TGCTACCACGGCTGTTCCGCGCGTGCTTGGAAGAGGTAGCGGAACGTTAC
AAATTTATCAGGAGCATTTTTTTTCCGCCGGGGGCATCGACGACCAACAC
CACCAACACCGCCATGCATGACCACATTGCCGAACACCACGAGGCACTCT
TCCACCTGACACCGGGCGACGAGCAAGAAAAAGCCATCGCGCGCATTCTC
AGCAGTGTTGGCAACTATCTTGAAACCCGCCGCGCTTTCCCCGAACAGGA
GGTGGCGCAGGTCGTTTGGAGCGGCGATCTGGACAAGGTGGCGGTAGCCT
ATCTGCGCATCGTGGTTTGTGCGAGCATTCAAGACCCTGCTGTACGCTTC
GAAGGCGACAACAATGCTCAACGAGCAACTGCAGCAGCAACTTCGACGAG
CAACAGCCAAACGGACAGAGGCGTGAACGTTGTCCGTTTTTCCCCCGAAC
TCCACTCGGACCCTGTGTGCAGCGACCATGGTAAAATAATGAACCGACGG
TGCGTGGTGATCTTTCCCGCCATCCTTCGGGAAAACGCGTCGAGATTGAC
CAGAGGCTACACCTTGCGCTACAACGCGAAGGAGGACAAAAAGCATCCCC
ACCTAGGGACGTCCTCTTCACTCGCTGCCCCCAGTGGTGGTCACCAAGGG
GACCGCTATTCCACACCGGTGGTAAATGACCTAGTCTCCATTGAAGGAAC
TGCTGAAGCTCAAGCAAGGAACAGTACCGGAAGGGCGAATGGCGAAAAGA
AGCCGTAG back to top
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