mRNA_Ecto-sp6_S_contig102.842.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig102.842.1
Unique NamemRNA_Ecto-sp6_S_contig102.842.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig102.842.1 vs. uniprot
Match: D7G7E7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7E7_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 1.200e-30
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 1 
Query:  412 KVLVRLRHVYDHDAELYEEFSRELLSPLLRLVPSALSSLDAVRLSSRVVVSLRENCVACLVRK 600
            +VLVRLRHVYDHDAELYEEFSRELLSP+LRLVPSALSSLDAVRLSSRVVVSLRENCVACLVRK
Sbjct:   34 EVLVRLRHVYDHDAELYEEFSRELLSPVLRLVPSALSSLDAVRLSSRVVVSLRENCVACLVRK 96
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BLAST of mRNA_Ecto-sp6_S_contig102.842.1 vs. uniprot
Match: D7FHF4_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHF4_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 5.290e-9
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 
Query:  598 KEVVHDLAAALYRLLSKRDPLLKAEAFRVAEIVLA 702
            KEVVHDLAAALYRLLSKRDPLLKAEAFRVAEIVLA
Sbjct:  437 KEVVHDLAAALYRLLSKRDPLLKAEAFRVAEIVLA 471
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig102.842.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7E7_ECTSI1.200e-3096.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHF4_ECTSI5.290e-9100.00Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig102contigEcto-sp6_S_contig102:175063..178692 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size702
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_010230.1
Cds size702
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348736.8137329-CDS-Ecto-sp6_S_contig102:175062..1751581682348736.8137329-CDS-Ecto-sp6_S_contig102:175062..175158Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig102 175063..175158 +
1682348736.823236-CDS-Ecto-sp6_S_contig102:176037..1762451682348736.823236-CDS-Ecto-sp6_S_contig102:176037..176245Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig102 176038..176245 +
1682348736.8320255-CDS-Ecto-sp6_S_contig102:176771..1768811682348736.8320255-CDS-Ecto-sp6_S_contig102:176771..176881Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig102 176772..176881 +
1682348736.840618-CDS-Ecto-sp6_S_contig102:177761..1779471682348736.840618-CDS-Ecto-sp6_S_contig102:177761..177947Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig102 177762..177947 +
1682348736.8499477-CDS-Ecto-sp6_S_contig102:178590..1786921682348736.8499477-CDS-Ecto-sp6_S_contig102:178590..178692Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig102 178591..178692 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig102.842.1prot_Ecto-sp6_S_contig102.842.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig102 175063..178692 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig102.842.1

>prot_Ecto-sp6_S_contig102.842.1 ID=prot_Ecto-sp6_S_contig102.842.1|Name=mRNA_Ecto-sp6_S_contig102.842.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=234bp
MAGTRHHSTRTVQVPRLLYATCGGDLGTRVTYQSRLSALGFGRDLSSGGG
GGGGGSMWDPDPMAADDDDEDGEDGGGGAGGVQGFVTEWHGAGSGGGGSR
RANGEEGEGQQEEEEEEEEEEEEEEEEEEADKFPPDGKVLVRLRHVYDHD
AELYEEFSRELLSPLLRLVPSALSSLDAVRLSSRVVVSLRENCVACLVRK
EVVHDLAAALYRLLSKRDPLLKAEAFRVAEIVLA
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mRNA from alignment at Ecto-sp6_S_contig102:175063..178692+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig102.842.1 ID=mRNA_Ecto-sp6_S_contig102.842.1|Name=mRNA_Ecto-sp6_S_contig102.842.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3630bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:175063..178692+ (Ectocarpus species6 EcLAC_371)
ATGGCGGGCACCCGGCACCATTCGACCCGCACTGTACAAGTCCCTCGACT
ACTGTATGCCACATGCGGCGGAGATTTGGGGACACGCGTTACGTATGTGC
GCCAAAGCTGGCGATTTTCTTGCCACTGCCCAGTTCAACAGCAGTGTTTG
GGTTGTGGTTAGAGGTAGCCACGAAACCAAAGCCACTTGTAGCAGGTTTT
TCAGGCCTCGGGCTACAACACCACGGCGCTAGGCTTCGCAAGGCCCAACT
TACCCCTAAACCCTAACCCTATCTCTAACCTAACCCTAACCCTAACCCTA
ACCCTAACCTTACCCCTAAACCGTAACCCTAACCCTAACCCAAACCTAAC
CCTAACCCTAACCTTACCCCTAAACCGTAACCCTAACCCAAGCTAGATTG
TGGGTAGGCCTAGGTCGCCGTACCGAGCTGCTGGAGCGCGCTTCGCGCTC
GCCAGCTCTGGCCTATTCGTACGCCTCGTGAATGGCACCCCTCCCCCGCT
TAGACCGACGTTCGGAGCTCGGTTGCCCCAGAACCAAACGGGGTGCGGAA
AGAGCCGGACAGTTCCACGAAAAGCCGCCGACGATGAGATGTTTCCGAAA
CCGTCATTTTTGGTTTGAGGAGCAATGGAATAGAGCTTGGAAAATCGGTC
TGGGGGGAGTGTCATCTCTCCGACTCTTACGGTATATTAGCGTGGTGTTC
CATCAGACGTAGTAGATACGGTGGGGGCGAGGTCGTACCGTTCCCCTTGT
TTGCGAGAGCAGTCGCAGAGGAATTTAGGGCGACGGGGAGGGAGTCTTGG
TTGCCCCCTATCAATCTCTCACTCTTTCTCTCTCTCTCTTTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCTC
CCACGTTACGCTTGGCCGGGCGCAGCAGTCGAGATTGTCTGCTCTCGGCT
TCGGACGCGACCTCTCGAGCGGCGGGGGCGGCGGCGGCGGTGGGTCAATG
TGGGACCCTGACCCCATGGCTGCAGACGACGACGACGAGGATGGCGAGGA
CGGCGGAGGGGGAGCGGGGGGAGTCCAAGGGTTCGTTACGGAGTGGCACG
GCGCTGGCAGCGGCGGCGGCGGCAGTAGAAGAGGTGAGAAAGTGGTGTCG
TTAGCAGGGGTACTGTAGCGACGTGCTCTGTTTCTGAACATTTCGGCTTT
GTTGATTGTTGGGGTGGTGCACCGTTCTGCAATATTTTTCTTGGCGAGAA
CGAAAATAGCCAAACATCCGTCTTTGCTCGTTTTCATTTGTAAATATTTG
GGAAAATGGGTAATTGGAATCAACAACACGCTTCAGTAACTTGTTTCGCG
GTGTTTGCATACCAATGTGTTTCATGTGCGGCATGCGTTTACATGAACCA
AGTGACATGTGTTGGTCTCCTTTAGCATCCTCATGGCACAGTCGTTACGC
CTCACAGCTTTCCCGCCCCTACCAGGTATTAGCCTCCGCATACCGCCCTC
CCCCCTCCGCTCAAAACTCATTCGCGTCCACCTGCCGCCTCCGGTGAAGC
GAAGGCCGACCCCACCTCCTCCCCCGGGTATTATTAGCCTCCTTATACCC
CCCCCCCCCCCCCCCCCCCCCCTCCGCTCAATACGCATTCACGCCCCCCC
CCGCTGAAGCGAACGGCGAAGAAGGCGAAGGCCAACAGGAAGAAGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAAGAGGAAGCCGACAA
GTTTCCTCCTGACGGCAAGGTGTGCAGTGCTTGCGTTGACATAAAAACGG
AGATATGGGAATTGGACGAGCAGATTTGTTCAGAGCCGTGATTTTGAGTT
TTTGAGTTCGGAGCCGGTATGAGGCTGGCAGGGCTACAACCGCAAGCAAG
CGAAAAAAAGTTGGGAAAATGGAGAGAGACGAGCAGATGTGTAGTCATTT
TAACGGCGCTTGTGTGAATGTCAGCGTGATAACCCCGGCACTGAATAGTA
GGAACGACAGCAACGAAATGATAACTGTTGCACACCACCAACCAAACAAG
CAGGACAATCCAATCGTCAACCCAAAAAAGACACACACGCGCACATACCC
GCTGGCACTGACGTCTTTCATTGGTCAGCCGGTTGGTGCGGTCGATGCTA
ATAATAAAAACACACACACACTCCACGTGCAGTTTTCTCCTGTCACTGCT
ACAGTATATGCCTTTTATCCGGAGAGTAGCATCGACAGATCGTCATGGTA
GCCCTTTGAAACACTTTGTGTTTTCAATCGCGCTGAGACTTGAAGCCTTT
TCATTGGTTAGCCGGTTTGTTAGCGCGGTTGATGCTAATGAAGAACACAC
ACACTTATTTAAAATAAAAACACACATAGATTTGTTTGTTTTCAACCGGA
CTTGAGACTGGCGTCTTTTCATTGGTCAACCCATTGGCGCGGTCAATGCA
CACTCAACAATACGCACAAACACACACGCAGGTGCTGGTTCGGCTGCGTA
CACACACACTAAATATTAAATAATACACACACACTGCAGTATTTTGTGTT
TTCAACTGGGCTTGAGACTGACGTCTTTTCATTGGTCAGCCGGTTAGAGC
GGTCGATGCTAATTCAACAAAACACACACAAACACACACCCGCGCGCAGG
TGCTGGTTCGGCTGCGCCACGTGTACGACCACGACGCCGAGCTATACGAG
GAATTCTCCCGCGAGCTGCTGTCGCCGCTGCTCCGCCTGGTGCCGTCGGC
GCTGTCCTCCCTCGACGCCGTTCGGCTCTCGTCGAGGGTGGTGGTGTCGC
TGCGGGAGAACTGCGTCGCCTGCCTCGTCCGAAAGGTGCGGTCAGTTTGG
TATTTATTAGCCATTATTCGTATACGCATGGGCATCGCATGCGACAGATT
TGAAGAATACATAAAAACACGGGAAGACTAAATACCCGTTCAAGATATAA
CCACACTCGAAGGGGATATTTTGAAGCCTTCACAGTGAGTGGAGGGAAAC
CGGCTGGGTACTGGGCTTGTTTCGAGTCTGTTTTATGATTTCCACTGATG
ATTTTCTTTTCTTAGTAAAAAGACTCTTTTCCATATGTTTGGATTTTGGT
TTTTAGGCTCTTCCGTCGACGGTGATCGATAGTGTAACGGTTTGACTTCC
AGATAAGATAAATAGCGCTTTCTCAGAGGTTGGTGGTGGCGTCGTTTAGG
GAGAACTGCGTCCGCTGCCTCGTCGTAAAGGCATTCTACGGTCTACCGTT
GGCGCATGCGTATGCGTGTGCATATGCGACACGGTCAATCAGTCAGTCGG
TCACTACCGTTAGAGGTTGTATAGAAGTAGATGTGTACGCATCCGTATGC
ATCTCAAAAGATGGTGCCCAACCACCACCAAAGCCTTTTCCATACAGCGC
AACCAACCGGCGTCTGCACGACCCACCCCCCCCCCCTGCCCACTCGTGCC
CCCAAACGACCAACCAAACACCCTACAGGAGGTCGTCCACGACTTGGCCG
CGGCCCTGTACCGCCTCCTTTCGAAGCGGGACCCGTTGCTGAAGGCCGAG
GCGTTTCGCGTTGCCGAGATCGTCCTCGCA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig102:175063..178692+

>mRNA_Ecto-sp6_S_contig102.842.1 ID=mRNA_Ecto-sp6_S_contig102.842.1|Name=mRNA_Ecto-sp6_S_contig102.842.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=702bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:175063..178692+ (Ectocarpus species6 EcLAC_371)
ATGGCGGGCACCCGGCACCATTCGACCCGCACTGTACAAGTCCCTCGACT
ACTGTATGCCACATGCGGCGGAGATTTGGGGACACGCGTTACGTATCAGT
CGAGATTGTCTGCTCTCGGCTTCGGACGCGACCTCTCGAGCGGCGGGGGC
GGCGGCGGCGGTGGGTCAATGTGGGACCCTGACCCCATGGCTGCAGACGA
CGACGACGAGGATGGCGAGGACGGCGGAGGGGGAGCGGGGGGAGTCCAAG
GGTTCGTTACGGAGTGGCACGGCGCTGGCAGCGGCGGCGGCGGCAGTAGA
AGAGCGAACGGCGAAGAAGGCGAAGGCCAACAGGAAGAAGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAAGAGGAGGAGGAAGAGGAAGCCGACAAGTTTC
CTCCTGACGGCAAGGTGCTGGTTCGGCTGCGCCACGTGTACGACCACGAC
GCCGAGCTATACGAGGAATTCTCCCGCGAGCTGCTGTCGCCGCTGCTCCG
CCTGGTGCCGTCGGCGCTGTCCTCCCTCGACGCCGTTCGGCTCTCGTCGA
GGGTGGTGGTGTCGCTGCGGGAGAACTGCGTCGCCTGCCTCGTCCGAAAG
GAGGTCGTCCACGACTTGGCCGCGGCCCTGTACCGCCTCCTTTCGAAGCG
GGACCCGTTGCTGAAGGCCGAGGCGTTTCGCGTTGCCGAGATCGTCCTCG
CA
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