prot_Ecto-sp6_S_contig102.839.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig102.839.1
Unique Nameprot_Ecto-sp6_S_contig102.839.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length175
Homology
BLAST of mRNA_Ecto-sp6_S_contig102.839.1 vs. uniprot
Match: A0A6H5KA78_9PHAE (TRASH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA78_9PHAE)

HSP 1 Score: 317 bits (811), Expect = 7.260e-109
Identity = 171/174 (98.28%), Postives = 171/174 (98.28%), Query Frame = 0
Query:    1 MVRIEICYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKGALAKEKAAIKAEIKDNIELLAPAAAVDREKTLTAFSDKAKQQKASAAASKARALMETED 174
            MVRIEICYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKGALAKEKAAIKAEIKDNIELLAPAAAVDREKTLTA SDKAKQ KASAAASKAR LMETED
Sbjct:    1 MVRIEICYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKGALAKEKAAIKAEIKDNIELLAPAAAVDREKTLTAISDKAKQ-KASAAASKARTLMETED 173          
BLAST of mRNA_Ecto-sp6_S_contig102.839.1 vs. uniprot
Match: A0A835Z8F8_9STRA (RL30, ribosomal protein 30 60S large ribosomal subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8F8_9STRA)

HSP 1 Score: 230 bits (586), Expect = 1.790e-74
Identity = 118/168 (70.24%), Postives = 142/168 (84.52%), Query Frame = 0
Query:    1 MVRIEICYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKGALAKEKAAIKAEIKDNIELLAPAAAVDREKTLTAFSDKAKQQKASAAASKARA 168
            MVR+E+CYFCS  +YPGHG+ F RND+KVF+FCRSKCHKNF +KRNPRK KWTKA+R+AAGKEM+VDTTFDFEKRRNRPVKYDRE MGKTLLAMKKV EVQA+REKRFF+ RHK   A+EKAAI+ E++ NIELL PAAA DREK L    +  +Q+++  A ++A+A
Sbjct:    1 MVRVEVCYFCSGPMYPGHGVQFVRNDAKVFKFCRSKCHKNFIKKRNPRKMKWTKAYRKAAGKEMTVDTTFDFEKRRNRPVKYDRELMGKTLLAMKKVTEVQAQREKRFFDVRHKDKAAREKAAIRTEVEQNIELLVPAAA-DREKALANVKEVIRQKESKNALTRAKA 167          
BLAST of mRNA_Ecto-sp6_S_contig102.839.1 vs. uniprot
Match: D7FZ76_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ76_ECTSI)

HSP 1 Score: 224 bits (570), Expect = 1.060e-72
Identity = 134/174 (77.01%), Postives = 134/174 (77.01%), Query Frame = 0
Query:    1 MVRIEICYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKGALAKEKAAIKAEIKDNIELLAPAAAVDREKTLTAFSDKAKQQKASAAASKARALMETED 174
            MVRIEICYFCSSRIYPGHGIVFARNDSK                                      DTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKGALAKEKAAIKAEIKDNIELLAPAAAVDREKTLTA SDKAKQ KASAAASKARALMETED
Sbjct:    1 MVRIEICYFCSSRIYPGHGIVFARNDSK--------------------------------------DTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKGALAKEKAAIKAEIKDNIELLAPAAAVDREKTLTAISDKAKQ-KASAAASKARALMETED 135          
BLAST of mRNA_Ecto-sp6_S_contig102.839.1 vs. uniprot
Match: A0A4D9CSX3_9STRA (TRASH domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CSX3_9STRA)

HSP 1 Score: 195 bits (496), Expect = 1.040e-60
Identity = 97/154 (62.99%), Postives = 125/154 (81.17%), Query Frame = 0
Query:    2 VRIEICYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKGALAKEKAAIKAEIKDNIELLAPAAAVDREKTLTAFSDKAK 155
            +RI  CYFCS  +YPGHG  F RND+KVF FCRSKCH+NF +KRNPRK++WTKA+R+AAGKEM VD TFDFEKRRNRPVKYDR+ +GKT+ AM+K++ +Q++RE+ F++ R + A  KEKAA++ E+K+N+ELLAPAAA  REK L    +K K
Sbjct:    1 MRILKCYFCSGPMYPGHGTTFVRNDAKVFNFCRSKCHRNFNKKRNPRKARWTKAYRKAAGKEMVVDATFDFEKRRNRPVKYDRDLVGKTVQAMQKIRTIQSRREEVFYQTRMREAKMKEKAALQVEVKENVELLAPAAA-SREKVLLNVREKVK 153          
BLAST of mRNA_Ecto-sp6_S_contig102.839.1 vs. uniprot
Match: A0A448YUA5_9STRA (TRASH domain-containing protein n=2 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448YUA5_9STRA)

HSP 1 Score: 194 bits (494), Expect = 1.430e-60
Identity = 99/156 (63.46%), Postives = 125/156 (80.13%), Query Frame = 0
Query:    2 VRIEICYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKGALAKEKAAIKAEIKDNIELLAPAAAVDREKTLTAFSDKAKQQ 157
            +RIE CYFCSS  YPGHGI F RNDSK FRFCRSKCH+NF +KRNPRK  WTKA+R+  GKEM+VD+TFDFEKRRNRPVKYDR+ MGKT+LAM++V+ ++  RE+RFF+NR K + A++K   + EI+ +IELLAPA A +RE+ +    D AKQ+
Sbjct:    1 MRIEKCYFCSSPCYPGHGITFVRNDSKQFRFCRSKCHRNFNKKRNPRKVAWTKAYRKTRGKEMAVDSTFDFEKRRNRPVKYDRDLMGKTILAMRRVESIKKAREQRFFDNRVKDSKAEKKQQARVEIEKSIELLAPAVA-NREQVMRNVIDSAKQR 155          
BLAST of mRNA_Ecto-sp6_S_contig102.839.1 vs. uniprot
Match: W7T7Z2_9STRA (Ribosome biogenesis protein rlp24 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T7Z2_9STRA)

HSP 1 Score: 196 bits (499), Expect = 3.890e-60
Identity = 97/156 (62.18%), Postives = 127/156 (81.41%), Query Frame = 0
Query:    2 VRIEICYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKGALAKEKAAIKAEIKDNIELLAPAAAVDREKTLTAFSDKAKQQ 157
            +RI  CYFCS  +YPGHG  F RND+KVF FCRSKCH+NF +KRNPRK++WTKA+R+AAGKEM VD TFDFEKRRNRPVKYDR+ +GKT+ AM+K++ +Q++RE+ F++ R + A  KEKAA++ E+K+N+ELLAPAAA  REK L    +K K++
Sbjct:   77 MRILKCYFCSGPMYPGHGTTFVRNDAKVFNFCRSKCHRNFNKKRNPRKTRWTKAYRKAAGKEMVVDATFDFEKRRNRPVKYDRDLVGKTVQAMQKIRTIQSRREEVFYQTRMREAKMKEKAALQVEVKENVELLAPAAA-SREKALLNVREKVKER 231          
BLAST of mRNA_Ecto-sp6_S_contig102.839.1 vs. uniprot
Match: A0A6U3SB39_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3SB39_9STRA)

HSP 1 Score: 193 bits (491), Expect = 5.110e-60
Identity = 99/159 (62.26%), Postives = 127/159 (79.87%), Query Frame = 0
Query:    2 VRIEICYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKGALAKEKAAIKAEIKDNIELLAPAAAVDREKTLTAFSDKAKQQKAS 160
            +RIE CYFCSS  YPGHG+VF RNDSK FRFCRSKCH+NF +KRNPRK  WTKA+R+  GKE+++D+TF+FEKRRNRPVKYDR  MGKT+LAM++V+ ++ KRE+RFF NR K A  ++KA  + EI+  IELLAPA A +RE+ +    DKA+++ AS
Sbjct:    1 MRIEKCYFCSSPCYPGHGMVFVRNDSKQFRFCRSKCHRNFNKKRNPRKVAWTKAYRKTRGKELAIDSTFEFEKRRNRPVKYDRNLMGKTILAMQRVQAIKEKREERFFANRMKDAKKEQKAQARVEIEKGIELLAPAVA-NREEVMRNVVDKARERIAS 158          
BLAST of mRNA_Ecto-sp6_S_contig102.839.1 vs. uniprot
Match: A0A7S2DM88_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DM88_9STRA)

HSP 1 Score: 192 bits (489), Expect = 8.770e-60
Identity = 105/171 (61.40%), Postives = 130/171 (76.02%), Query Frame = 0
Query:    1 MVRIEICYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKGALAKEKAAIKAEIKDNIELLAPAAAVDREKTLTAFSDKAKQQKASAAASKARALME 171
            MVR+E CYFCS  +YPGHGI F RND+KVF+FCRSKCHKNF RKRNPRK+ WTKAFRRA  KEM+VD+T DFEKRRNRPVKYDRE +G TL AM++VKE+  +RE+ F+  R K +   ++ A K E+K+N+E+LAPAAA  +EK L   +D A+  KA+A    A A ME
Sbjct:    8 MVRVETCYFCSGPLYPGHGIQFVRNDAKVFKFCRSKCHKNFIRKRNPRKTAWTKAFRRARKKEMTVDSTLDFEKRRNRPVKYDRELVGTTLRAMQRVKEIHTRREEIFYAKRMKESKTIQRQAAKVELKENMEILAPAAA-QKEKVLLNIADHARV-KAAAQRRTAAAKME 176          
BLAST of mRNA_Ecto-sp6_S_contig102.839.1 vs. uniprot
Match: A0A1E7FH63_9STRA (60S ribosomal protein L24 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FH63_9STRA)

HSP 1 Score: 192 bits (489), Expect = 1.100e-59
Identity = 99/154 (64.29%), Postives = 122/154 (79.22%), Query Frame = 0
Query:    2 VRIEICYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKGALAKEKAAIKAEIKDNIELLAPAAAVDREKTLTAFSDKAK 155
            +RIE CYFCSS  YPGHG+ F RNDSK FRFCRSKCH+NF +KRNPRK  WTKA+R+  GKEM+VD+TFDFEKRRNRPVKYDR+ MGKT+LAMK+V+ ++  RE+RFFENR   A A++K   + EI+ +IELLAPA A +RE+ +    D AK
Sbjct:    1 MRIEKCYFCSSPCYPGHGMTFVRNDSKQFRFCRSKCHRNFNKKRNPRKVAWTKAYRKTRGKEMAVDSTFDFEKRRNRPVKYDRDLMGKTILAMKRVETIKKAREERFFENRMSDAKAEKKKQARVEIEKSIELLAPAVA-NREQVMRNVIDSAK 153          
BLAST of mRNA_Ecto-sp6_S_contig102.839.1 vs. uniprot
Match: A0A6U0IKM5_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0IKM5_9STRA)

HSP 1 Score: 189 bits (480), Expect = 2.390e-58
Identity = 94/156 (60.26%), Postives = 125/156 (80.13%), Query Frame = 0
Query:    2 VRIEICYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKSKWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEVQAKREKRFFENRHKGALAKEKAAIKAEIKDNIELLAPAAAVDREKTLTAFSDKAKQQ 157
            +RIE CYFCSS +YPGHGIVF RNDSK FRFCRSKCH+NF +KRNPRK  WTKA+R+  GKE++VD+TF+FEKRRNRPVKYDRE MGKT++AM++V+ ++ +REK++  NR K A  ++K   + EI+ +IELLAPA A +RE+ +    D A+++
Sbjct:    1 MRIEKCYFCSSPVYPGHGIVFVRNDSKQFRFCRSKCHRNFNKKRNPRKVAWTKAYRKTRGKELAVDSTFEFEKRRNRPVKYDRELMGKTIMAMQRVQSIKERREKQYHANRMKDAAREKKVQARVEIEKSIELLAPAVA-NREEVMRNVVDSARER 155          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig102.839.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KA78_9PHAE7.260e-10998.28TRASH domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835Z8F8_9STRA1.790e-7470.24RL30, ribosomal protein 30 60S large ribosomal sub... [more]
D7FZ76_ECTSI1.060e-7277.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A4D9CSX3_9STRA1.040e-6062.99TRASH domain-containing protein n=2 Tax=Monodopsid... [more]
A0A448YUA5_9STRA1.430e-6063.46TRASH domain-containing protein n=2 Tax=Pseudo-nit... [more]
W7T7Z2_9STRA3.890e-6062.18Ribosome biogenesis protein rlp24 n=1 Tax=Nannochl... [more]
A0A6U3SB39_9STRA5.110e-6062.26Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2DM88_9STRA8.770e-6061.40Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A1E7FH63_9STRA1.100e-5964.2960S ribosomal protein L24 n=1 Tax=Fragilariopsis c... [more]
A0A6U0IKM5_9STRA2.390e-5860.26Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011017TRASH domainSMARTSM007464TRASHcoord: 7..45
e-value: 5.3E-10
score: 49.2
IPR000988Ribosomal protein L24e-relatedPFAMPF01246Ribosomal_L24ecoord: 3..66
e-value: 1.8E-31
score: 108.2
IPR000988Ribosomal protein L24e-relatedPANTHERPTHR1079260S RIBOSOMAL PROTEIN L24coord: 3..153
IPR038630Ribosomal protein L24e/L24 superfamilyGENE3D2.30.170.20coord: 2..69
e-value: 2.2E-29
score: 103.2
NoneNo IPR availablePANTHERPTHR10792:SF8RIBOSOME BIOGENESIS PROTEIN RLP24-RELATEDcoord: 3..153
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 5..57
IPR023442Ribosomal protein L24e, conserved sitePROSITEPS01073RIBOSOMAL_L24Ecoord: 9..26

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig102contigEcto-sp6_S_contig102:155645..159165 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig102.839.1mRNA_Ecto-sp6_S_contig102.839.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig102 155645..159540 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig102.839.1 ID=prot_Ecto-sp6_S_contig102.839.1|Name=mRNA_Ecto-sp6_S_contig102.839.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=175bp
MVRIEICYFCSSRIYPGHGIVFARNDSKVFRFCRSKCHKNFTRKRNPRKS
KWTKAFRRAAGKEMSVDTTFDFEKRRNRPVKYDREAMGKTLLAMKKVKEV
QAKREKRFFENRHKGALAKEKAAIKAEIKDNIELLAPAAAVDREKTLTAF
SDKAKQQKASAAASKARALMETED*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011017TRASH_dom
IPR000988Ribosomal_L24e-rel
IPR038630L24e/L24_sf
IPR023442Ribosomal_L24e_CS