mRNA_Ecto-sp6_S_contig102.836.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig102.836.1 vs. uniprot
Match: D7FZ79_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ79_ECTSI) HSP 1 Score: 362 bits (930), Expect = 8.940e-120 Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 1 Query: 1 MSASSNFLIPAMKRLMKPTQKLKPGLLPKNIIPKNKWTILRGDKVHVVNGHHTGEVGIVQAVIRKQNRIIVEGVNMRKYSKKPEGGGRGTTVTREAAIHVTNVNLVCPETGFPTKVSYKFLEDGTRVRVAKRSGAVIPRPEILTVRRKPRSNLTGPKDTVKEDVEEITFRGLDENGYENP 540
MSASSNFLIPAMKRLMKPTQKLKPGLLPKNIIPKNKWTILRGDKVHVVNGHHTGEVGIVQAVIRKQNRIIVEGVNMRKYSKKPEGGGRGTTVTREAAIHVTNVNLVCPETGFPTKVSYKFLEDGTRVRVAKRSGAVIPRPEILTVRRKPRSNLTGPKDTVKEDVEEITFRGLDENGYENP
Sbjct: 1 MSASSNFLIPAMKRLMKPTQKLKPGLLPKNIIPKNKWTILRGDKVHVVNGHHTGEVGIVQAVIRKQNRIIVEGVNMRKYSKKPEGGGRGTTVTREAAIHVTNVNLVCPETGFPTKVSYKFLEDGTRVRVAKRSGAVIPRPEILTVRRKPRSNLTGPKDTVKEDVEEITFRGLDENGYENP 180
BLAST of mRNA_Ecto-sp6_S_contig102.836.1 vs. uniprot
Match: A0A835Z5A5_9STRA (Translation protein SH3-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5A5_9STRA) HSP 1 Score: 171 bits (434), Expect = 2.310e-46 Identity = 85/177 (48.02%), Postives = 121/177 (68.36%), Query Frame = 1 Query: 4 SASSNFLIPAMKRLMKPTQKLKPGLLPKNIIPKNKWTILRGDKVHVVNGHHTGEVGIVQAVIRKQNRIIVEGVNMRKYSKKPEGGGRGTTVTREAAIHVTNVNLVCPETGFPTKVSYKFLEDGTRVRVAKRSGAVIPRPEILTVRRKPRSNLTGPKDTVKEDVEEITFRGLDENGYE 534
S +S L+ AMK+L +P ++ +P L PKNI+ KW I+RGD V +V G + G+V+ VIRK+NR+IVEG+N+++ + G V+R +HV+ V LVCPETG PT+ + ++LEDGTRVRVA SGA+IPRPE+L RR+ ++ + GPKDT E +TF+G+DE G E
Sbjct: 6 STASRGLLKAMKKLQEPRKRYQPSLDPKNILSPEKWLIVRGDLVQMVTGADKNKQGVVREVIRKENRLIVEGLNVQQVTLPERDGQAERVVSRPQPVHVSAVALVCPETGRPTRAARRYLEDGTRVRVAALSGAIIPRPEVLLQRRRAKNLIVGPKDTEAEAAHAVTFKGVDELGNE 182
BLAST of mRNA_Ecto-sp6_S_contig102.836.1 vs. uniprot
Match: A0A7S2UWK4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWK4_9STRA) HSP 1 Score: 152 bits (385), Expect = 2.300e-39 Identity = 76/170 (44.71%), Postives = 111/170 (65.29%), Query Frame = 1 Query: 34 MKRLMKPTQKLKPGLLPKNIIPKNKWTILRGDKVHVVNGHHTGEVGIVQAVIRKQNRIIVEGVNMRKYSKKPEGGGRGTT---VTREAAIHVTNVNLVCPETGFPTKVSYKFLEDGTRVRVAKRSGAVIPRPEILTVRRKPRSNLTGPKDTVKEDVEEITFRGLDENGYE 534
M+ K Q + L P+ +IP W I GDKV V++G G+ G+V+ + R +N ++VEG+N +K+ E G V REAA+H + +NLV P TG PT+V +++LEDG RVR++K+SGAVIP+PE L +R+KPR TGP+DT +DV ++TFRG+ +G E
Sbjct: 5 MRYYEKGAQAMLQRLQPRAVIPIKNWNIFTGDKVAVISGKEEGKQGVVRRIRRTRNSVVVEGINFQKFPGSLEDAAPGKAPEDVYREAALHYSQLNLVDPITGEPTRVMWRYLEDGARVRISKKSGAVIPKPEGLGLRKKPRKTATGPRDTPPDDVLQVTFRGIGADGRE 174
BLAST of mRNA_Ecto-sp6_S_contig102.836.1 vs. uniprot
Match: A0A7S1C4Y4_9STRA (50S ribosomal protein L24, chloroplastic n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C4Y4_9STRA) HSP 1 Score: 147 bits (371), Expect = 1.390e-37 Identity = 74/141 (52.48%), Postives = 96/141 (68.09%), Query Frame = 1 Query: 97 PKNKWTILRGDKVHVVNGHHTGEVGIVQAVIRKQNRIIVEGVNMRKYSKKPEGGGRGTTVTREAAIHVTNVNLVCPETGFPTKVSYKFLEDGTRVRVAKRSGAVIPRPEILTVRRKPRSNLTGPKDTVKEDVEEITFRGLD 519
P KW I+RGD V VV+G G+ G+V+ V+RKQNRI+VEGVNM + + +G G + EAA+HV+NVNLV P +G PT+V+ + +EDG+RVRVAKRSGA+IPRPE+L R PR GPKDT + TF D
Sbjct: 25 PLGKWRIVRGDTVEVVSGRDRGKQGVVKRVLRKQNRIVVEGVNMVRKHVRADGQNAGGIFSVEAALHVSNVNLVDPVSGKPTRVAIREMEDGSRVRVAKRSGAIIPRPELLKARTTPRRASVGPKDTEAAEAHRRTFADED 165
BLAST of mRNA_Ecto-sp6_S_contig102.836.1 vs. uniprot
Match: A0A8J2X1P5_9STRA (50S ribosomal protein L24, chloroplastic n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X1P5_9STRA) HSP 1 Score: 148 bits (373), Expect = 1.400e-37 Identity = 82/156 (52.56%), Postives = 102/156 (65.38%), Query Frame = 1 Query: 103 NKWTILRGDKVHVVNGHHTGEVGIVQAVIRKQNRIIVEGVNMRK---YSKKPEGGGRGTTVTREAAIHVTNVNLVCPETGFPTKVSYKFLEDGTRVRVAKRSGAVIPRPEILTVRRKPRSNLTGPKDTVKEDVEEITF-----------RGLDENG 528
N+W ILRGDKV VVNG H G+ GIVQ V+R NR+IVE VN+ YSK E + T +IH +NVNLVCP T PT+V+ +FL+DGTRVRVA RSGA+I +P ILT R KPRS GP+DT ++ V E+T+ R LDE+G
Sbjct: 35 NRWNILRGDKVVVVNGRHRGQSGIVQKVLRSTNRLIVEDVNVGDRMLYSKGDEDKVK-TPTKAPRSIHYSNVNLVCPVTNLPTRVARRFLDDGTRVRVAVRSGAIIEKPAILTERHKPRSTQAGPRDTPEDHVLEVTYDPVVDAEQWRRRELDEDG 189
BLAST of mRNA_Ecto-sp6_S_contig102.836.1 vs. uniprot
Match: A9NV55_PICSI (KOW domain-containing protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=A9NV55_PICSI) HSP 1 Score: 142 bits (357), Expect = 8.000e-36 Identity = 75/146 (51.37%), Postives = 98/146 (67.12%), Query Frame = 1 Query: 109 WTILRGDKVHVVNGHHTGEVGIVQAVIRKQNRIIVEGVNMRKYSKKPEGGGRGTTVTREAAIHVTNVNLVCPETGFPTKVSYKFLEDGTRVRVAK---RSGAVIPRPEILTVRRKPRSNLTGPKDTVKEDVEEITF-----RGLDE 522
W ILRGD V + G G+ G+++ VIR QNR+IVEG N+ K + G G T EA +HV+NV ++ P TG P K+ YKFLEDG++VRV++ SG++IPRPEIL VR KPR N+ GPKDTV+EDV E T+ RGL +
Sbjct: 13 WKILRGDNVMINAGKDKGQTGVIKRVIRSQNRVIVEGKNLVKKHVRRGEGHEGGIFTVEAPLHVSNVQVLDPVTGAPCKIGYKFLEDGSKVRVSRGQAASGSIIPRPEILKVRTKPRINVVGPKDTVEEDVLERTYDAKAGRGLPD 158
BLAST of mRNA_Ecto-sp6_S_contig102.836.1 vs. uniprot
Match: F0XVF8_AURAN (50S ribosomal protein L24, chloroplastic (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVF8_AURAN) HSP 1 Score: 136 bits (343), Expect = 3.990e-34 Identity = 71/136 (52.21%), Postives = 93/136 (68.38%), Query Frame = 1 Query: 109 WTILRGDKVHVVNGHHTGEVGIVQAVIRKQNRIIVEGVNMRKYSKKPEGGGRGTTVTREA--AIHVTNVNLVCPETGFPTKVSYKFLEDGTRVRVAKRSGAVIPRPEILTVRRKPRS-NLTGPKDTVKEDVEEITF 507
W+I+RGDKV VVNG H G+ G+VQ V+R+ NR+IVEGVN+R G V A ++H +NVNLVCP T PT+V+ +FL+DGTRVRVA RSGA+I PE+L R PR+ + GPKDT + DV +T+
Sbjct: 1 WSIVRGDKVVVVNGRHRGQSGVVQHVLRQSNRLIVEGVNVRDRMLYAPGDEEKVKVKTAAPCSVHYSNVNLVCPVTSLPTRVARRFLDDGTRVRVAVRSGAIIELPEVLKERHTPRTPGVPGPKDTDEADVLAVTY 136
BLAST of mRNA_Ecto-sp6_S_contig102.836.1 vs. uniprot
Match: A0A843X4B8_COLES (KOW domain-containing protein n=6 Tax=Mesangiospermae TaxID=1437183 RepID=A0A843X4B8_COLES) HSP 1 Score: 137 bits (344), Expect = 5.140e-34 Identity = 69/144 (47.92%), Postives = 93/144 (64.58%), Query Frame = 1 Query: 106 KWTILRGDKVHVVNGHHTGEVGIVQAVIRKQNRIIVEGVNMRKYSKKPEGGGRGTTVTREAAIHVTNVNLVCPETGFPTKVSYKFLEDGTRVRVAK---RSGAVIPRPEILTVRRKPRSNLTGPKDTVKEDVEEITFRGLDENG 528
KW ILRGD V ++ G GE GI++ V+R QNR+IVEG N+ K K G G T EA +HV+NV ++ P+TG P K+ ++LEDGT+VR+++ SG++IPRPEIL +R PR N+ GPKDT V E T+ NG
Sbjct: 12 KWKILRGDNVMIIRGKDKGETGIIKRVVRSQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVLDPQTGKPCKIGIRYLEDGTKVRISRGIGASGSIIPRPEILKIRTTPRPNIIGPKDTPMNLVLEKTYDAKTGNG 155
BLAST of mRNA_Ecto-sp6_S_contig102.836.1 vs. uniprot
Match: A0A7S3V6A7_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V6A7_9STRA) HSP 1 Score: 137 bits (344), Expect = 1.110e-33 Identity = 78/180 (43.33%), Postives = 111/180 (61.67%), Query Frame = 1 Query: 1 MSASSNFLIPAMKRLMKPTQKLKPGLLPKNIIPKNKWTILRGDKVHVVNGHHT--GEVGIVQAVIRKQNRIIVEGVNM--RKYSKKPEGGGRGTTVTREAAIHVTNVNLVCPETGFPTKVSYKFLEDGTRVRVAKRSGAVIPRPEILTVRRKPRSNLTGPKDTVKED-VEEITFRGLDEN 525
M+ + + MKR ++KP + K K KW ILRGD V V+ H G+ G+V V R+++R+I+EGVN ++ P+ G G T+ +E +IH +NVNLV P +G PT+VS K LEDG++VRVAK+SGA+IPRPEIL RR+P+S + DT D V E T+ + E+
Sbjct: 1 MATRAKIMNSIMKRTFPKRTEIKPAM--KEAAKKTKWNILRGDTVQVIERKHPEFGKQGVVTVVDRRRDRVIIEGVNTGPKRQKANPDRGLAGRTIMKERSIHYSNVNLVDPVSGLPTRVSRKTLEDGSKVRVAKKSGAIIPRPEILKERRRPKSIASTVSDTSDADLVWETTYSSIPES 178
BLAST of mRNA_Ecto-sp6_S_contig102.836.1 vs. uniprot
Match: A0A4S8JSD8_MUSBA (KOW domain-containing protein n=5 Tax=commelinids TaxID=4734 RepID=A0A4S8JSD8_MUSBA) HSP 1 Score: 135 bits (340), Expect = 1.840e-33 Identity = 70/136 (51.47%), Postives = 91/136 (66.91%), Query Frame = 1 Query: 109 WTILRGDKVHVVNGHHTGEVGIVQAVIRKQNRIIVEGVNMRKYSKKPEGGGRGTTVTREAAIHVTNVNLVCPETGFPTKVSYKFLEDGTRVRVAK---RSGAVIPRPEILTVRRKPRSNLTGPKDTVKEDVEEITF 507
W ILRGD V ++ G GE GI++ VIR QNR+IVEG N+ K K G G + E+ +HV+NV ++ P TG P K+ YK+LEDG++VRV++ SG VIPRPEIL RRKPR N+ GPKDT + V E T+
Sbjct: 13 WKILRGDNVMIIRGKDKGETGIIKRVIRSQNRVIVEGKNLVKKHIKQGQGHEGGIFSIESPLHVSNVQVLDPATGKPCKIGYKYLEDGSKVRVSRGLAASGTVIPRPEILKERRKPRPNIVGPKDTPIDLVLEKTY 148 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig102.836.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig102.836.1 >prot_Ecto-sp6_S_contig102.836.1 ID=prot_Ecto-sp6_S_contig102.836.1|Name=mRNA_Ecto-sp6_S_contig102.836.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=182bp MSASSNFLIPAMKRLMKPTQKLKPGLLPKNIIPKNKWTILRGDKVHVVNGback to top mRNA from alignment at Ecto-sp6_S_contig102:114030..121136+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig102.836.1 ID=mRNA_Ecto-sp6_S_contig102.836.1|Name=mRNA_Ecto-sp6_S_contig102.836.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=7107bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:114030..121136+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig102:114030..121136+ >mRNA_Ecto-sp6_S_contig102.836.1 ID=mRNA_Ecto-sp6_S_contig102.836.1|Name=mRNA_Ecto-sp6_S_contig102.836.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=546bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:114030..121136+ (Ectocarpus species6 EcLAC_371)back to top |