Homology
BLAST of mRNA_Ecto-sp6_S_contig102.833.1 vs. uniprot
Match:
D7FZ82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ82_ECTSI)
HSP 1 Score: 314 bits (804), Expect = 7.440e-104
Identity = 223/317 (70.35%), Postives = 241/317 (76.03%), Query Frame = 1
Query: 1 MTTCSNTDSFRLEADIDYIYDDYGEVESPDGCYEEPVYDPVESGEAASEFYSNGIRSDYEYFFKMYVYQDAELAEVWGIATYVEGITNTRCIDYYLNEYTTLHPTEVIYWACEDDDGGFSYKTLSATISTVCGCDTPAPTAAPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPAAASAPAXXXXXXXXXXXXXXXXXXDGLTLAPRTLTYTFSPTRAPEVASSPPPVSTTSDEAAPAGEVAXXXXXXXXXXXXXXLAALFKTGRLKIKRTGKQRKPSHDDVASGSGSTGSTPPAASXXXXXXXXXXXXXXXEAIE 951
MT+CS TDSFRLEADIDY+++DYGEV SPDGCY+E + PVESGEA S FYS+G SDYEYFF+ Y + D E VW IATY++ NTRCIDY LN+YTTLHPTEV+YWACEDDDGG Y SATIST+CGC+TPAPTAAPTXXXXXXXXXXXXXXXXX +GL RTL T SPTRAPEV S+PPPVSTTSDEAAPAGEVA XXXXXXXXXXXXXLAALFKTGRLKIKRTGKQRKPSHDDVASGSGS G+TPPAAS XXXXXXXXXXXXXXEAIE
Sbjct: 1 MTSCSYTDSFRLEADIDYVFEDYGEVSSPDGCYQESINSPVESGEAVSAFYSDGGLSDYEYFFRTYEFDDDE---VWVIATYLDDTFNTRCIDYDLNDYTTLHPTEVLYWACEDDDGG--YTDFSATISTICGCNTPAPTAAPTXXXXXXXXXXXXXXXXXGPTP-----------------------------------NGLXXXXRTLMDTSSPTRAPEVVSTPPPVSTTSDEAAPAGEVAGXXXXXXXXXXXXXLAALFKTGRLKIKRTGKQRKPSHDDVASGSGSMGNTPPAASEXXXXXXXXXXXXXXEAIE 277
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig102.833.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 7.44e-104 / Id = 70.35 Sequence D7FZ82_ECTSI
Match Name E-value Identity Description
D7FZ82_ECTSI 7.440e-104 70.35 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 1 Model size 954 Hectar predicted targeting category other localisation Exons 3 Ec32 ortholog description hypothetical protein Ec32 ortholog Ec-13_002750.1 Cds size 954
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682348736.0066304-CDS-Ecto-sp6_S_contig102:85449..85697 1682348736.0066304-CDS-Ecto-sp6_S_contig102:85449..85697 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig102 85450..85697 - 1682348736.0162702-CDS-Ecto-sp6_S_contig102:86435..86916 1682348736.0162702-CDS-Ecto-sp6_S_contig102:86435..86916 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig102 86436..86916 - 1682348736.0248291-CDS-Ecto-sp6_S_contig102:87720..87945 1682348736.0248291-CDS-Ecto-sp6_S_contig102:87720..87945 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig102 87721..87945 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig102.833.1
>prot_Ecto-sp6_S_contig102.833.1 ID=prot_Ecto-sp6_S_contig102.833.1|Name=mRNA_Ecto-sp6_S_contig102.833.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=318bp
MTTCSNTDSFRLEADIDYIYDDYGEVESPDGCYEEPVYDPVESGEAASEF back to top mRNA from alignment at Ecto-sp6_S_contig102:85450..87945-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig102.833.1 ID=mRNA_Ecto-sp6_S_contig102.833.1|Name=mRNA_Ecto-sp6_S_contig102.833.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2496bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:85450..87945- (Ectocarpus species6 EcLAC_371)ATGACGACGTGCTCGAATACGGATTCTTTTCGTCTCGAAGCCGACATCGA
TTACATTTACGACGACTACGGCGAGGTCGAGAGCCCGGACGGTTGCTATG
AAGAGCCTGTCTACGACCCCGTAGAAAGTGGCGAAGCTGCGAGTGAGTTT
TATTCAAACGGTATTCGCTCCGATTACGAATATTTCTTCAAGATGTACGT
GTACCAAGATGCTGAGCTGGCTGAG GTGAGTGAGGTACCAGTACTGACTG
AATCTGTACATGCCCGCAGGTCGATGGGTGGGTGTCATTCACAGTGGTGT
GGGACGTGTTTCTAGAGGTATCTGGTAGAGACTTGTACCCTGTTTCCTTG
CACCTGACTTGGGGATCGTGGGTAGTTACCCATATGGCAATAGGATGGGA
GCGATCCTGCTTGTCGCTGTTGACTCGTTTTCGCCCTGTGAAAAAGCACT
TGGACCGGTTGATATCGGAGTGCCCGCCGGTGGTACTCGGTGGGCAGCTC
TGACTATTGTTTGTGTTGGACCTTTCTTTTGTCGAGAGGGGCATCTAATC
TAATGTGCAGGGATACTTCTTGTTCTTGGTGGAGATAGCGGAAAATATGT
AGGGGTACCACTGGCAATCAAACAGCCCTAGATCTGAGTCTAGAATTCCA
GCCCGAAGAATCTAATATTTCGCCAGGTACTAACTCTTAGCCGAAAACAT
TTTTTGGTTGTACTACCGCCTGACCGCATTCAACTGCTACGCTGTGCATC
AACGATGATGAAGAAATTAGGGCAGCTTTTGCAGCAAGTGTTGTTCGGTT
GTACAATCATATACTGTGTCAGTACGATACGATAAATTTGGAGTATGTAA
GTTCCATTTGCCCACGAGTGCGTGATTGGCTATCCATGTGTATTGAATGC
TTCTTTGCTTACGATAGGCGTGGTGAAGAGCTACAGTGCGTCAAGGCGAT
GTGACAGCTATATTGATTCCCTTTTTCTCTTCCTCATGCAGACGCTCTCA
ATTTCGCACGGCCTCTTGCTTGTCTCCAGGTGTGGGGAATCGCCACTTAT
GTGGAAGGTATAACCAATACGAGGTGTATAGACTACTACCTGAACGAATA
TACTACGCTGCACCCCACGGAAGTAATATACTGGGCTTGCGAAGACGATG
ATGGCGGGTTTTCATATAAAACCTTATCCGCCACAATATCAACCGTCTGC
GGCTGCGACACTCCGGCCCCTACTGCAGCCCCTACCACTCCGCCCCCTAC
TCCGGGCCCTGCCACTCCGGACCCTTCTGCAGCCCGTGCCACTCCGGACC
CCACTGCTGCCCCTACCACTCCGCTCCCTGCTGCCGCTTCCGCTCCTGCT
CCTTCGGCTGTCTCTTCCACTCCTGCTCCCGCCGCTGCCCCCGGGCCTAC
CCCTGATGGTTTGACGCTGGCACCGCGTACTCTTACGTATACTTTTTCTC
CCACGCGTGCCCCTGAAGTTGCATCTTCCCCGCCTCCAGTGAGCACCACC
TCGGATGAAG GTAGGCACGGGTTGGGGATGAAGATGTAGACTTAACGACG
TCGCGATATAAGCGATAGTGTATTTTGTCGACGGGTCCGTCTTGGAAGAC
CTTCGAATGTTTGTTGTTTGAATTCATCCATTGGTTTGAGCGCTGGTTCG
CTTGTTCCCCTTACTATCTTCTTCTGCCTTCTTTTCCTAGAATGTGACGA
ATCTACCATCGGTCGCACAATATCGTGTTCTTGTTTATATTTTGATCTTC
TTCGTAAACTCGAGTCTAGGCCCATGTGGTATTGTTCGGAAAAGGGCCTC
GTGCACTCTCTTCTTTTGTCGATTTCGCTATTCCCTATTGTTTGTGGTTC
GTGCAACAAATACAAAGGTCCATGCAAAACCCCGAAATTCGTGACGTATG
GCGTTCAGAGAAACGAGACGCATCTAAAATTTCTCGGCACACGACAACAT
GTGGAACCGAAATGCACCTCCCCGCTAATGTTTTTTCTTTTCTCTCCCGT
TGCGCCCAAAAAGAACGAAGATCTCGTGCAAGTCGCAAGCACCACAGCGG
AGCACAGCTGTAGGGGCCACACACGTTTCTGCCTTTTGTGTTACAATGTT
TGCAGGAATTTGCAACCAATTCACACAGGCTCTCGTTGTGTGGTTGACAA
CAACGCGACGTAGAAGCGGCACGGGGAGATACACACCCGACCTCTAGCCT
TCGTTGTCGAATTATTTGATCGCGATTTATCTGTCCCGGCGAAACCAGCA
GCTCCAGCGGGAGAAGTGGCTGGAGGGGTGGTGGCGGGCGTGGTAGTGGT
CGTGGCCGTCGTCCTTGCTGCCCTGTTCAAGACTGGTCGCCTGAAGATCA
AGCGAACCGGGAAACAACGGAAGCCTTCTCATGACGATGTCGCTAGCGGC
TCTGGGTCCACGGGTAGCACGCCGCCCGCGGCTTCTGAGCCCCCCGTTCA
TCATCAGTACCCCGTTGCCTATCAGTATCCAGAGGCCATTGAGTAG back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig102:85450..87945-
>mRNA_Ecto-sp6_S_contig102.833.1 ID=mRNA_Ecto-sp6_S_contig102.833.1|Name=mRNA_Ecto-sp6_S_contig102.833.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=954bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:85450..87945- (Ectocarpus species6 EcLAC_371) back to top