mRNA_Ecto-sp6_S_contig102.832.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig102.832.1
Unique NamemRNA_Ecto-sp6_S_contig102.832.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig102.832.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig102contigEcto-sp6_S_contig102:75588..76601 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size249
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-13_002730.1
Cds size249
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348735.9672303-CDS-Ecto-sp6_S_contig102:75587..756751682348735.9672303-CDS-Ecto-sp6_S_contig102:75587..75675Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig102 75588..75675 -
1682348735.978142-CDS-Ecto-sp6_S_contig102:76440..766011682348735.978142-CDS-Ecto-sp6_S_contig102:76440..76601Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig102 76441..76601 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig102.832.1prot_Ecto-sp6_S_contig102.832.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig102 75588..76601 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig102.832.1

>prot_Ecto-sp6_S_contig102.832.1 ID=prot_Ecto-sp6_S_contig102.832.1|Name=mRNA_Ecto-sp6_S_contig102.832.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=83bp
MQSTLNPPSHFKTKDWFSSALYVTRPPPAPASCDIPYLPRRRTAGRSYPR
ADIRKEPAQRCSWVFVTWNHRKFIAAHSTAHV*
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mRNA from alignment at Ecto-sp6_S_contig102:75588..76601-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig102.832.1 ID=mRNA_Ecto-sp6_S_contig102.832.1|Name=mRNA_Ecto-sp6_S_contig102.832.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1014bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:75588..76601- (Ectocarpus species6 EcLAC_371)
ATGCAGTCAACACTCAATCCGCCGTCACATTTCAAGACAAAAGACTGGTT
CTCTTCAGCACTGTACGTCACGCGGCCTCCTCCTGCGCCCGCATCGTGCG
ACATACCATACCTACCACGACGTCGGACTGCTGGGCGCTCCTATCCCCGT
GCTGACATCAGGTGAGATTTTGGGAGAGGAAGTTGGCGCACACCCGGTGC
TTATGATCTGCGTGCACTTAGCAGAGGCCACAGAGAGCAGGTTACGCTGT
GTATGTCCGCCCTGGGTCGAGGTGAAGGTTGTCTGAAAGCGGGAGGAGGG
CAAACTCGCTGGACACATCGTGGCTCGAGCAGCATGCCTGGTTTGGGACG
ATGCAGTTCGATGGAGCATCGTTAATTTTTTTCCACATAGCGGCATGATC
AATGATCAACATCACACAATACCAGCACATATGTATCCGACCGCTCGCTA
CCACTGTTGTTGCTAAAGTTGCGCACTTGAATGAGTTCCACAAAGTCTTC
TTCACATACTACCAGCACCAAATCGAAGTCTGCAACACACAAAAGAATGC
CCCCCACAACCTCGTTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCCAA
AGTGTCGTTCAGACAGCATTCATTCGCAAAACCCACGTCGTGAACGTTTG
GTGGCCGGCATTGTCTGGGATATCCTCCGTATAGATATGACTTTTTCATG
CACCGTGTTGGCGCTCAGCAAACAACGGAAGGCCTCGTTGCGAATGGGTT
GCTATCATTGACGACTTGGTCGCCGCATATTCATTCTGTAAATCAACACG
GTTTAGTTATTCTCTGACAAAAACGTTTCTCTTGAATGAAATGCTGGATG
TCTTTTCCAATGCCTGTGCTGCGTTATTGGTCATTGACACCACCACCACG
AAATACCACCCCACCCATTGTGTCAGGAAAGAGCCAGCACAAAGGTGCAG
CTGGGTCTTTGTCACGTGGAATCATCGGAAATTTATTGCAGCACATAGCA
CAGCACATGTTTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig102:75588..76601-

>mRNA_Ecto-sp6_S_contig102.832.1 ID=mRNA_Ecto-sp6_S_contig102.832.1|Name=mRNA_Ecto-sp6_S_contig102.832.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=249bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:75588..76601- (Ectocarpus species6 EcLAC_371)
ATGCAGTCAACACTCAATCCGCCGTCACATTTCAAGACAAAAGACTGGTT
CTCTTCAGCACTGTACGTCACGCGGCCTCCTCCTGCGCCCGCATCGTGCG
ACATACCATACCTACCACGACGTCGGACTGCTGGGCGCTCCTATCCCCGT
GCTGACATCAGGAAAGAGCCAGCACAAAGGTGCAGCTGGGTCTTTGTCAC
GTGGAATCATCGGAAATTTATTGCAGCACATAGCACAGCACATGTTTGA
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