mRNA_Ecto-sp6_S_contig102.829.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp6_S_contig102.829.1
Unique Name	mRNA_Ecto-sp6_S_contig102.829.1
Type	mRNA
Organism	Ectocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)

Homology

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BLAST of mRNA_Ecto-sp6_S_contig102.829.1 vs. uniprot
Match: S2JF41_MUCC1 (Uncharacterized protein n=1 Tax=Mucor circinelloides f. circinelloides (strain 1006PhL) TaxID=1220926 RepID=S2JF41_MUCC1)

HSP 1 Score: 83.6 bits (205), Expect = 3.700e-19
Identity = 48/68 (70.59%), Postives = 49/68 (72.06%), Query Frame = 1

Query:   82 AALAAYGSCQTGCNAVAVACYAAAGATFGVATGGAGVPIVIAGCNTALGTCMAACWGVTGAAALAPTP 285
            A L AYG CQTGCNAVAVACY+AAG TFG  T GAGVP VI GCNTALG CMA C     AA  AP P
Sbjct:   20 AGLLAYGICQTGCNAVAVACYSAAGFTFGTVTAGAGVPAVILGCNTALGVCMAGCV----AAGCAPIP 83

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BLAST of mRNA_Ecto-sp6_S_contig102.829.1 vs. uniprot
Match: A0A060SDH7_PYCCI (Uncharacterized protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SDH7_PYCCI)

HSP 1 Score: 82.8 bits (203), Expect = 7.850e-19
Identity = 45/68 (66.18%), Postives = 50/68 (73.53%), Query Frame = 1

Query:   82 AALAAYGSCQTGCNAVAVACYAAAGATFGVATGGAGVPIVIAGCNTALGTCMAACWGVTGAAALAPTP 285
            A + +YG CQTGCN++AVACYAA G TFG  T GAGVP V+ GCN ALGTCMAAC  V    ALAP P
Sbjct:   22 AGILSYGLCQTGCNSLAVACYAAGGFTFGTVTAGAGVPAVVLGCNAALGTCMAACAAV----ALAPIP 85

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BLAST of mRNA_Ecto-sp6_S_contig102.829.1 vs. uniprot
Match: A0A835XLR9_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XLR9_9CHLO)

HSP 1 Score: 82.8 bits (203), Expect = 8.290e-19
Identity = 47/84 (55.95%), Postives = 57/84 (67.86%), Query Frame = 1

Query:   34 IVCLMFMVTKVAGGPAAALAAYGSCQTGCNAVAVACYAAAGATFGVATGGAGVPIVIAGCNTALGTCMAACWGVTGAAALAPTP 285
            +VC + ++  ++G  A  L+ YG CQ+GCNAV VACYAAAG TFG  T GAG+P V+ GCN  LGTCMAAC     AA L P P
Sbjct:    9 LVCCLAIMAAISGADAGILS-YGICQSGCNAVVVACYAAAGFTFGTVTAGAGIPAVLVGCNAGLGTCMAACV----AAGLLPVP 87

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BLAST of mRNA_Ecto-sp6_S_contig102.829.1 vs. uniprot
Match: A0A164TMX6_9CRUS (Uncharacterized protein n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A164TMX6_9CRUS)

HSP 1 Score: 82.4 bits (202), Expect = 1.080e-18
Identity = 46/66 (69.70%), Postives = 49/66 (74.24%), Query Frame = 1

Query:   88 LAAYGSCQTGCNAVAVACYAAAGATFGVATGGAGVPIVIAGCNTALGTCMAACWGVTGAAALAPTP 285
            L AYG CQTGCNA+AVACYAAAG TFGV+T GAG+P  I GCN ALG CMAAC     A   APTP
Sbjct:   23 LVAYGVCQTGCNALAVACYAAAGFTFGVSTFGAGIPAAIVGCNGALGICMAAC----AATLFAPTP 84

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BLAST of mRNA_Ecto-sp6_S_contig102.829.1 vs. uniprot
Match: A0A835YLC6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLC6_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.110e-18
Identity = 50/81 (61.73%), Postives = 53/81 (65.43%), Query Frame = 1

Query:   40 CLMFMVTKVAGGPAAALAAYGSCQTGCNAVAVACYAAAGATFGVATGGAGVPIVIAGCNTALGTCMAACWGVTGAAALAPT 282
            CL       + GPAA    Y  CQTGCNA  VACY AAGATFG  T GAG P+VI GCNTALGTCMAAC     AA L+PT
Sbjct:   12 CLALQGHTASAGPAA----YAICQTGCNAGVVACYTAAGATFGTMTAGAGTPLVIIGCNTALGTCMAACV----AAGLSPT 84

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BLAST of mRNA_Ecto-sp6_S_contig102.829.1 vs. uniprot
Match: A0A1C7N6S2_9FUNG (Uncharacterized protein n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7N6S2_9FUNG)

HSP 1 Score: 81.3 bits (199), Expect = 2.080e-18
Identity = 45/65 (69.23%), Postives = 47/65 (72.31%), Query Frame = 1

Query:   91 AAYGSCQTGCNAVAVACYAAAGATFGVATGGAGVPIVIAGCNTALGTCMAACWGVTGAAALAPTP 285
            A+YG CQ GCNAVAVACYA AG TFG  T GAG+P VI GCN ALGTCM AC     AA LAP P
Sbjct:    9 ASYGICQAGCNAVAVACYAGAGFTFGTVTAGAGIPAVILGCNAALGTCMTACV----AAGLAPIP 69

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BLAST of mRNA_Ecto-sp6_S_contig102.829.1 vs. uniprot
Match: A0A1J1HFI7_9DIPT (CLUMA_CG000612, isoform A n=1 Tax=Clunio marinus TaxID=568069 RepID=A0A1J1HFI7_9DIPT)

HSP 1 Score: 81.3 bits (199), Expect = 3.020e-18
Identity = 49/91 (53.85%), Postives = 59/91 (64.84%), Query Frame = 1

Query:   19 MLSALIVCLMFMVT--KVAGGPAAALAAYGSCQTGCNAVAVACYAAAGATFGVATGGAGVPIVIAGCNTALGTCMAACWGVTGAAALAPTP 285
            M + + +C++ +++   +  GP A    YG CQTGCNA+ VACYAAAG TFG  T GAGVP  I  CN ALGTCMAAC     AA  APTP
Sbjct:    1 MRNVIFICIVLLLSASSIKAGPLA----YGICQTGCNAMVVACYAAAGFTFGTVTAGAGVPAAIIACNVALGTCMAACV----AAGCAPTP 83

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BLAST of mRNA_Ecto-sp6_S_contig102.829.1 vs. uniprot
Match: UPI00200773F8 (uncharacterized protein n=2 Tax=Epithele typhae TaxID=378194 RepID=UPI00200773F8)

HSP 1 Score: 81.3 bits (199), Expect = 3.100e-18
Identity = 46/74 (62.16%), Postives = 51/74 (68.92%), Query Frame = 1

Query:   64 VAGGPAAALAAYGSCQTGCNAVAVACYAAAGATFGVATGGAGVPIVIAGCNTALGTCMAACWGVTGAAALAPTP 285
            +A G +A  A YG CQTGCN +AVACYA AG TFG  T G G+P  IA CN+ALGTC AAC  VT    LAPTP
Sbjct:   14 LATGASAGPAFYGICQTGCNTLAVACYAGAGFTFGTVTAGVGIPAAIAACNSALGTCSAACAAVT---LLAPTP 84

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BLAST of mRNA_Ecto-sp6_S_contig102.829.1 vs. uniprot
Match: I1BJI1_RHIO9 (Uncharacterized protein n=1 Tax=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) TaxID=246409 RepID=I1BJI1_RHIO9)

HSP 1 Score: 80.9 bits (198), Expect = 4.280e-18
Identity = 47/68 (69.12%), Postives = 48/68 (70.59%), Query Frame = 1

Query:   82 AALAAYGSCQTGCNAVAVACYAAAGATFGVATGGAGVPIVIAGCNTALGTCMAACWGVTGAAALAPTP 285
            A L AYG CQTGCNA+AVACY AAG TFG  TGGA VP VIA CN ALGTCMA C     AA  AP P
Sbjct:   20 AGLLAYGICQTGCNALAVACYGAAGFTFGTVTGGAAVPPVIAACNLALGTCMAGCV----AAGAAPVP 83

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BLAST of mRNA_Ecto-sp6_S_contig102.829.1 vs. uniprot
Match: A0A835TKD9_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835TKD9_CHLIN)

HSP 1 Score: 80.9 bits (198), Expect = 4.640e-18
Identity = 45/64 (70.31%), Postives = 48/64 (75.00%), Query Frame = 1

Query:   94 AYGSCQTGCNAVAVACYAAAGATFGVATGGAGVPIVIAGCNTALGTCMAACWGVTGAAALAPTP 285
            AYG CQTGCNA+AVACYAAAG TFGV T GA VP+ I  CN ALGTCMAAC     AA L+P P
Sbjct:   27 AYGICQTGCNAIAVACYAAAGFTFGVPTWGAAVPVAILACNAALGTCMAACV----AAGLSPIP 86

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp6_S_contig102.829.1 vs. uniprot

BLAST of mRNA_Ecto-sp6_S_contig102.829.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
S2JF41_MUCC1	3.700e-19	70.59	Uncharacterized protein n=1 Tax=Mucor circinelloid...	[more]
A0A060SDH7_PYCCI	7.850e-19	66.18	Uncharacterized protein n=1 Tax=Pycnoporus cinnaba...	[more]
A0A835XLR9_9CHLO	8.290e-19	55.95	Uncharacterized protein n=1 Tax=Edaphochlamys deba...	[more]
A0A164TMX6_9CRUS	1.080e-18	69.70	Uncharacterized protein n=1 Tax=Daphnia magna TaxI...	[more]
A0A835YLC6_9STRA	1.110e-18	61.73	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A1C7N6S2_9FUNG	2.080e-18	69.23	Uncharacterized protein n=1 Tax=Choanephora cucurb...	[more]
A0A1J1HFI7_9DIPT	3.020e-18	53.85	CLUMA_CG000612, isoform A n=1 Tax=Clunio marinus T...	[more]
UPI00200773F8	3.100e-18	62.16	uncharacterized protein n=2 Tax=Epithele typhae Ta...	[more]
I1BJI1_RHIO9	4.280e-18	69.12	Uncharacterized protein n=1 Tax=Rhizopus delemar (...	[more]
A0A835TKD9_CHLIN	4.640e-18	70.31	Uncharacterized protein n=1 Tax=Chlamydomonas ince...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp6_S_contig102	contig	Ecto-sp6_S_contig102:19016..22210 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species6 EcLAC_371 OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Fungi
Stop	1
Start	1
Seed ortholog score	84.0
Seed ortholog evalue	4.3e-14
Seed eggNOG ortholog	36080.S2JF41
Model size	288
Hectar predicted targeting category	signal peptide
Exons	2
EggNOG OGs	1GXMI@112252,2DZF2@1,2S6ZF@2759,3A8NA@33154,3P98N@4751
Cds size	288
Best tax level	Fungi incertae sedis
Best eggNOG OG	NA\|NA\|NA

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682348735.6973705-CDS-Ecto-sp6_S_contig102:19015..19187	1682348735.6973705-CDS-Ecto-sp6_S_contig102:19015..19187	Ectocarpus species6 EcLAC_371	CDS	Ecto-sp6_S_contig102 19016..19187 -
1682348735.7073011-CDS-Ecto-sp6_S_contig102:22094..22210	1682348735.7073011-CDS-Ecto-sp6_S_contig102:22094..22210	Ectocarpus species6 EcLAC_371	CDS	Ecto-sp6_S_contig102 22095..22210 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp6_S_contig102.829.1	prot_Ecto-sp6_S_contig102.829.1	Ectocarpus species6 EcLAC_371	polypeptide	Ecto-sp6_S_contig102 19016..22210 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp6_S_contig102:19016..22210-
coding sequence from alignment at Ecto-sp6_S_contig102:19016..22210-

protein sequence of mRNA_Ecto-sp6_S_contig102.829.1

>prot_Ecto-sp6_S_contig102.829.1 ID=prot_Ecto-sp6_S_contig102.829.1|Name=mRNA_Ecto-sp6_S_contig102.829.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=96bp
MKFFMSMLSALIVCLMFMVTKVAGGPAAALAAYGSCQTGCNAVAVACYAA
AGATFGVATGGAGVPIVIAGCNTALGTCMAACWGVTGAAALAPTP*

mRNA from alignment at Ecto-sp6_S_contig102:19016..22210-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp6_S_contig102.829.1 ID=mRNA_Ecto-sp6_S_contig102.829.1|Name=mRNA_Ecto-sp6_S_contig102.829.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3195bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:19016..22210- (Ectocarpus species6 EcLAC_371)
ATGAAGTTCTTCATGTCGATGCTCTCCGCCCTCATCGTGTGCCTCATGTT
CATGGTGACAAAGGTGGCGGGAGGCCCGGCTGCGGCGCTGGCTGCGTACG
GCTCGTGTCAAACCGGGTGAGTGAGTTGGAAATCAACTTTGGTGGAAGCA
TGCATATTCGACACAGGCGCGATAGCTGGGTTTGTTTCAAGGTCACAGTG
CTATCGTACCTCGTGTGTGTAAAGAACATATAGCGTGTGGTACAAGTGAC
GTCAAGGTTTTGGTGCCAAAAACATGGCAAAAGTATCCCAGAATGCATCG
TGTTGATACTTCGTCTACAACACCTTGTATGCCGCTCCTCCCAAGACTGA
CCCTCTCGCATTGCACGAGATGATTCTGCCCTAAAAGATTAGTTGCCTAT
GTAGGATCAAGCTGCAGGCTTGCTTTGTCAGATGTTCTGTATCATGCAAA
CCAGATACAGATACATGACCTACACACATAAACACCACAATTTTTCACAA
AAAGCTCTCAGATGATTGATTATTCCAGTATCCAGAGTAGAGTCGTTGAG
TTTCAACACCATCGTCGAACTCAACCAACCAACTTCGTTGGCACATGGCT
GTCCATGGACTCATGAATGACATTAACGAGAGGTTCTCACGAAATGGAAG
GGGTTACCCCCCCGGTTACGGGCAATTGGTCCCCACTAAAAGGGGTTGCA
TGCAGCTTGCTAATGTAGATCGTACCATCACGAAAGACGAAAGGTTGCTT
GAATCGGGAGAGGTCCGAAACCTCTAGGATTGTTCCCCCACGGGTTGCTT
TTCACTCGCTGTCCCATCTCACTCGCTCGTTGCTGCGTTTATCGAGAGGC
TGTGTGTACCCAGCGTAGAAACAACCATCATTGATCTGCCTGAAACAAAC
GCGGCAGGTTGCGAGTGGACTCTAAAACGACGGCGGGACCCTCAATTTTT
CCCGGGAACATACTGCTGATAGACTACGTACTCCCGATTCGCTCCGAAAT
GTTCCGACCTGTATGGGCTGTCTCCCTCTTCCAAGAAGAGGGTTGGCTAG
GAAAAAAAAAACGGTTCAGCGGCATCGCCTGCGACTGACTCGTTGTCGGA
ACATGTCGGAGCGAAACGGAAGTAAGTGGTCTTGGCGCCGCTGACGAGCT
GACGACCTTCAAAATTCCGCGCTGGAAATGTCCATTCAACAACAACGGAG
ACGACCATATCGATACATACAGAACTCGCGGAGTTTGATAAGGTGTTGAT
GGACAAGAGGCAAGCCATCTGCCGCTCTCTCGATTCGCTTGGACGTCGCT
TTGTCGGCTCTCCCTACTGTAGACGGACTGGTCTTCCCCTAGACTAGAGG
CAGAATGAATGTGACCTTGTTCACCAAAGGCACGGCGTTCGCCAAGAATC
GCCGTCAGATCCAATGGATATTTCACTACGTACACAACACTGTACAAACA
AGCTGCACAGATAAAAATCTGTTCGTGATTCAATCCTCAAGAGAGAACGA
ACTAATGCACTCAACTCATGGAAAAAGGAGCGTCAGTGGTTCAAAACGCC
GAGACCGTGAACGTGCAGAATAGTATGCACAAGAGAGTGTAAGAACAATC
GAGATTGCTTCGAACCAATAGAAACACCAAAGAAAAGTGAGTACAGCAAT
AATGTGGGCCCATAGTCGTTGTCCATAGAACACAGTACCAGCCAACGGAA
ATTGGTGGCCAACACGCCGTTCGACATGCGCAATTCGACGTGATGACACC
CATCAGTGTCGCTCGTGTCATCCTGAGGTTGCGTCTCGTGGTCTTGAAGA
ATCTCGACTATCGTTTCGGGCTCGTGAGTCAACTTCATTCAATGCCGGAC
GCCTCGCGCGACTTGAGCTTGACTTTTTTTGTCTTCTCCAAAGCGGAAAA
ATATTTGTGTGATCCGTGTCTTCGTTACTCTTGGCCTGGGGTGGCGCGGA
AAGTCATGGTGCGGCGAAAAACGAAGAAAATGTTTCCCCCCACTCGCCCC
TGGCAAACCATCTCGAATTTCATAGGTCGGAGGGGTCATCCCTCCTAGCC
GTGACGACAGTAAAAACTTACATCAAGGTTCACTAATCATTCGACTGTGT
TTTACGTAGAGTGTAAACACTCACGTGGATCAATTTTGTTTTGCAGCACA
CTAACGCAATATACGGGCAGCAAACGACAATGAATGGCGCATGCACGTAC
AGTAGCTCCACACATACATAAGTGTACTGATGTTGCAGCATGTATGTCGT
TGGAGTTGTCTAACCCAGCCGTTTATCAAAATGCACTACGTCCGTTCGTT
TCTTTGGTGGCGCTTCAACGCGTACCCACGGGCTTGGAATATTTTCCCTT
GCTTCCAATCGACGTCTCGGTGAAAGGCCGTCATGAATCATTGACATCTT
TGACGATTCATAGCGAAAATAAGCCAGGTTTCTCAGTCCTTTCTGAAACG
TCGCCCCTCACATTTCCAGTTAGTGGTTGATAGTGATAAGGACCCTCTGC
GGCGTGACCATGACTTGTACGCACAGCGTTAATCAATAGGTGAACTCCCA
CGTGTCCAGAAAGAATGGAACAATTCACACCAGCTTTGAGTATCGTCCTG
CTTGGTTGGGACGGAAAGATACCAAACAAGAGCGCGATTTGGGTATGAAT
ATATATGTTGTGCCGTTTTCACAAAAGTTGAAACCCACAGAATCCTGCTG
GTCCCCAATTTTTTCTCTAGGAGACTTCTTGTGTGTCATCCTCTGCCTGA
TACCTCCAGTTGGGACTCCTGTGTTTATCATGAGAAATGATTGTTGTTTC
GTATCGTCTGACCCAAATGAGTCACTCTTGATATTTAGTTGTTGACATTC
GGCGGTTGACGCTACCGCATGCCCTGCTTTATCTTGCTTGATCGATGCAC
AAGACAGATCTTCACGGTGTGCCGACCACTCGAGCTCTCTTCATTGTTAT
GCACGGTCTATGTTAAGCATATCACCCACCAGCTCCGCCCCCCCCGTCTC
CAACAATATATATTCACCGCCAGATGCAACGCGGTCGCGGTCGCGTGCTA
TGCGGCTGCCGGCGCCACCTTCGGGGTCGCCACGGGAGGAGCCGGCGTTC
CAATTGTCATCGCTGGCTGCAACACTGCCTTGGGCACGTGCATGGCCGCC
TGCTGGGGAGTCACGGGGGCCGCTGCCTTGGCCCCTACCCCGTAA

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig102:19016..22210-

>mRNA_Ecto-sp6_S_contig102.829.1 ID=mRNA_Ecto-sp6_S_contig102.829.1|Name=mRNA_Ecto-sp6_S_contig102.829.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=288bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:19016..22210- (Ectocarpus species6 EcLAC_371)
ATGAAGTTCTTCATGTCGATGCTCTCCGCCCTCATCGTGTGCCTCATGTT
CATGGTGACAAAGGTGGCGGGAGGCCCGGCTGCGGCGCTGGCTGCGTACG
GCTCGTGTCAAACCGGATGCAACGCGGTCGCGGTCGCGTGCTATGCGGCT
GCCGGCGCCACCTTCGGGGTCGCCACGGGAGGAGCCGGCGTTCCAATTGT
CATCGCTGGCTGCAACACTGCCTTGGGCACGTGCATGGCCGCCTGCTGGG
GAGTCACGGGGGCCGCTGCCTTGGCCCCTACCCCGTAA