mRNA_Ecto-sp6_S_contig102.827.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig102.827.1 vs. uniprot
Match: D7FHM3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM3_ECTSI) HSP 1 Score: 771 bits (1992), Expect = 9.880e-279 Identity = 432/459 (94.12%), Postives = 437/459 (95.21%), Query Frame = 2 Query: 50 VWAVHVPEQGFVLIPDTRYNRLDRYTFIPGKLEDVPKGNRIMDRLVAGFVRSLEDAGIDDQMRKGDRPTRKGQRSTPPGAGAVGSTVDLGTEQRGEKGPMRKKASKGASVDPLDVDSGASEQSVPKGRQKASVKTREAGGXXXXXXXXXXXXXXXKVSESESESFTTHTIRSARRKMTPEQRKQLTEISKSTCPDRMKERNTALAAADEVSRKREAKLLKRKKGEAKSAAVAARKGTPAPTAALHKNDKNVKAGLGNKQPAVRAAPAAASLDPCKNDQANRLTASESSFLKKLLAKQHGTESGDSEEDDDESVDHLQDARSEPQDDLENDDSQGAGDGEADEASLKVMREWRAALHRLRLIRVEGVNASITTIQNDSTDRDGNVVKALVGNPMPTTKRWLLQLAAVDVCHDDTCCPETKLLKDAVKTHAIKAGDTETPVASGKPASAKEKDGKTKPERS 1426 V VHVPEQ FVLIPDTRYNRLDRYTFIPGKLEDVPKGNRIMDRLVAGFV+SLEDAGIDDQMRKG RPTRK QRSTPPGAGAVGSTVDLGTEQRGEKGPMRKKASKGAS DPLDVDSGASEQS PKGR+KASVKTREAG XXXXXXXXXXXXXXXKVSESESES TTHTIRSARRKMTPEQRKQLTEISKSTCPDRMKERN ALAAADEVSRKREAKLLKRKKGEAKSAAVAARKGTPAPTAALHKND NVKAG NKQPA RAAPAAASLDPCKNDQANRLTASESSFLKKLLAKQHGTESGDSEEDDDESVDHLQDARSEPQDDLENDDSQGAGDGEADEASLKVMREWRAALHRLRL R+EGVNASITTIQNDS D+DGNVVKALVGNPMPT KRWLLQLAAVDVCHDDTCCPETKLLKDAVKTH IKA DTETPVASGKP SAK K GKTKP+RS Sbjct: 18 VGRVHVPEQDFVLIPDTRYNRLDRYTFIPGKLEDVPKGNRIMDRLVAGFVKSLEDAGIDDQMRKGGRPTRKRQRSTPPGAGAVGSTVDLGTEQRGEKGPMRKKASKGASGDPLDVDSGASEQSAPKGRKKASVKTREAGXXXXXXXXXXXXXXXXKVSESESESDTTHTIRSARRKMTPEQRKQLTEISKSTCPDRMKERNAALAAADEVSRKREAKLLKRKKGEAKSAAVAARKGTPAPTAALHKNDNNVKAGPSNKQPAGRAAPAAASLDPCKNDQANRLTASESSFLKKLLAKQHGTESGDSEEDDDESVDHLQDARSEPQDDLENDDSQGAGDGEADEASLKVMREWRAALHRLRLTRIEGVNASITTIQNDSKDKDGNVVKALVGNPMPTAKRWLLQLAAVDVCHDDTCCPETKLLKDAVKTHPIKAEDTETPVASGKPTSAKAKGGKTKPKRS 476
BLAST of mRNA_Ecto-sp6_S_contig102.827.1 vs. uniprot
Match: A0A6H5JUG3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUG3_9PHAE) HSP 1 Score: 391 bits (1005), Expect = 1.380e-128 Identity = 256/441 (58.05%), Postives = 284/441 (64.40%), Query Frame = 2 Query: 197 VRSLEDAGIDDQMRKGDRPTRKGQRSTPPGAGAVGSTVDLGTEQRGEKGPMRKKASKGASVDPLDVDSGASEQSVPKGRQKASVKTREAGGXXXXXXXXXXXXXXXKVSESESESFTTHTIRSARRKMTPEQRKQLTEISKSTCPDRMKERNTALAAADEVSRKRE------------AKLLKRKKGEAKSAAVAARKGTPA---------PTAALHKNDKNVKAGLGNKQPAVRAAPAAASLDPCKNDQANRLTASESSFLKKLLAKQHGTESGDSEEDDDESVDHLQDARSEPQDDLENDDSQGAGDGEADE---------------------ASLKVMREWRAALHRLRLIRVEGVNASITTIQNDSTDRDGNVVKALVGNPMPTTKRWLLQLAAVD-VCHDDTCCPETKLLKDAVKTHAIKAGDTETPVASGKPASA 1390 V + + D+ RKG RPTRKGQR T P AGA GS VDL TEQRGE+G RKKASKGAS DPLDVDSG SEQ PKG+QKASVKTR+A E S TTH++RSARRK+TPEQ K+LTE+SKSTCPDR+KERN A AAADEVSRKR AKLLKRKK +AKSAAVAARK P P+AA K N +LD CKNDQANRLTASE SFLKKLLAKQ+G ESGD EEDDDESVD L+DAR+EP DLE+ DSQGAGDG+ADE ASLKVMREWRAAL+RLR R+EGVNA+ITTIQNDS D DGN G P +++ +CHDDTCCPETKLLKDAVKTH I+A DTE PVAS KP SA Sbjct: 72 VACMHPPTLPDKPRKGGRPTRKGQRPTSPRAGAAGSPVDLVTEQRGEEGATRKKASKGASGDPLDVDSGGSEQPAPKGKQKASVKTRKA--------------------EXXXXSDTTHSLRSARRKVTPEQGKKLTEVSKSTCPDRIKERNAAFAAADEVSRKRVRQAVLAQEGVEGAKLLKRKKAKAKSAAVAARKAPPGTKKAAATLDPSAAKSKTSLNXXXXXXXXXXXXXXXXXX-NLDSCKNDQANRLTASEKSFLKKLLAKQNGVESGDLEEDDDESVDDLEDARAEPHGDLESYDSQGAGDGKADEDEDSPLDHFRDCLAAALPWKKASLKVMREWRAALYRLRNTRIEGVNAAITTIQNDSKDGDGNTR----GEPHADSQQVAPSACGRGCLCHDDTCCPETKLLKDAVKTHPIEADDTEEPVASAKPKSA 487
BLAST of mRNA_Ecto-sp6_S_contig102.827.1 vs. uniprot
Match: D7G6L1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6L1_ECTSI) HSP 1 Score: 276 bits (707), Expect = 3.130e-84 Identity = 209/362 (57.73%), Postives = 235/362 (64.92%), Query Frame = 2 Query: 197 VRSLEDAGIDDQMRKGDRPTRKGQRSTPPGAGAVGSTVDLGTEQRGEKGPMRKKASKGASVDPLDVDSGASEQSVPKGRQKASVKTREAGGXXXXXXXXXXXXXXXKVS-----ESESESFTTHTIRSARRKMTPEQRKQLTEISKSTCPDRMKERNTALAAADEVSRKREAKL-----LKRKKGEAKSAAVAARKG-----TPAPTAALHKNDKNVKAGLGNKQPAV-------------------------RAAPAAASLDPCKNDQA----------------------------NRLTASESSFLKKLLAKQHGTESGDSEEDD-DESVDHLQDARSEPQDDLENDDSQGAGDGEADE 1075 V ++ + D+ RKG RPTRKGQRST P AGA G VDL EQRGE+G RKKASKGAS DPLDVDSG SEQ P+G++KASVKTR+AG XXXXXXXXXXXXXXX ESESES TT T+RSARRK+TPEQRK LTE+SKSTCPDR+KER+ A AA +E R+ +L RKKGEAKSA VAA+K TPAPTAA NDKNVKA G K+PA RAAPAAA+LDP KNDQA NR TAS S++KKLLAKQ+ ESGDSEE D DESVD L+DAR+EP DLE+DDSQGAGDG ADE Sbjct: 96 VACVDPPTLSDKQRKGGRPTRKGQRSTSPRAGAAGCPVDLAREQRGEEGATRKKASKGASGDPLDVDSGVSEQPAPRGKKKASVKTRKAGXXXXXXXXXXXXXXXXMSEPVSEFESESESDTTRTLRSARRKVTPEQRKNLTEMSKSTCPDRIKERDAAFAAHNESLRRGRGRLSWPRKALRKKGEAKSATVAAQKARTTKETPAPTAARRNNDKNVKAPPGTKKPAATLGQSAAKSKKILNKXXXXXXXXXXRAAPAAANLDPSKNDQASKGPVSASPSNKSGREEKKTRDDTTSTANRRTASGKSYVKKLLAKQNAVESGDSEEADADESVDELEDARAEPHGDLESDDSQGAGDGSADE 457
BLAST of mRNA_Ecto-sp6_S_contig102.827.1 vs. uniprot
Match: D7FUP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUP6_ECTSI) HSP 1 Score: 221 bits (562), Expect = 3.470e-65 Identity = 149/282 (52.84%), Postives = 165/282 (58.51%), Query Frame = 2 Query: 692 EAKLLKRKKGEAKSAAVAARKGTPAPTAALHKNDKNVKAGLGNKQPAVRAAPAAASLDPCKNDQ--------------ANRLTASESSFLKKLLAKQHGTESGDSEEDDDESVDHLQDARSEPQDDLENDDSQ-----------------------GAGDGEADEASLKVMREWRAALHRLRLIRVEGVNASITTIQNDSTDRDGNVVKALVGNPMPTTKRWLLQLAAVDVCHDDTCCPETKLLKDAVKTHAIKAGDTETPVASGKPASAKEKDGKTKPERS 1426 E KLLKRKKGEAKSAAVA RK PAPTAALHKNDKN KA G K+PA P AA N A+ T + + L ++L ++ S D+ + R L S+ A KVMREWRAALHRLRL R+EGVNA+ITTIQNDS DRDGNVVKALVGNPMPT KRWL QLAAVDVCHD TCCPETKLLKDAVKTH I+A DTETPVAS KP +AK K GKTK +RS Sbjct: 11 EVKLLKRKKGEAKSAAVAPRKEAPAPTAALHKNDKNEKAPPGTKKPAATLDPPAAKSKKSLNXXXXXXXXXXXXXXXAASTWTHARTIRLVRILCRRARRTSLDARK------------RRRVMTRLPRTGSRKMMXXXXXXXXXXXXXXXXXXXXXXXKAPAMAKLTKVMREWRAALHRLRLTRIEGVNAAITTIQNDSKDRDGNVVKALVGNPMPTAKRWLFQLAAVDVCHDGTCCPETKLLKDAVKTHPIEADDTETPVASAKPTNAKRKGGKTKRKRS 280
BLAST of mRNA_Ecto-sp6_S_contig102.827.1 vs. uniprot
Match: A0A6H5JEG3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEG3_9PHAE) HSP 1 Score: 217 bits (552), Expect = 5.910e-63 Identity = 151/273 (55.31%), Postives = 167/273 (61.17%), Query Frame = 2 Query: 221 IDDQMRKGDRPTRKGQRSTPPGAGAVGSTVDLGTEQRGEKGPMRKKASKGASVDPLDVDSGASEQSVPKGRQKASVKTREAGGXXXXXXXXXXXXXXXKVSESESESF------TTHTIRSARRKMTPEQRKQLTEISKSTCPDRMKERNTALAAADEVSRKR----------------EAKLLKRKKGEAKSAAVAARKG-----TPAPTAALHKNDKNVKAGLGNKQPAV-------------------------RAAPAAASLDPCKNDQ 883 + D RKG RPTRKGQRST P AGA G VDL EQRGE+G RKKAS+GAS DPLDVDS EQ PKG++KASVKTR A G KVSE SE TTHT+RSARRK+ PEQRK+LTE+SKSTC D++KER+ A AA +EVS+KR EAKLLKRKKGEAKSAAVAARK TPA TAAL NDKNVKA G K+PA RAAPAAA+LDP KNDQ Sbjct: 80 LPDNQRKGGRPTRKGQRSTSPRAGAAGPPVDLAREQRGEEGATRKKASRGASGDPLDVDSVGPEQPAPKGKKKASVKTRNACGK--------------KVSEPVSEXXXXXXXDTTHTLRSARRKVPPEQRKKLTEMSKSTCSDQIKERDAAFAAHNEVSKKRKSNIGVLELPARVDAKEAKLLKRKKGEAKSAAVAARKARTTKETPALTAALRYNDKNVKAPFGTKKPAATLDPSAAKSKKRLNKALPGTKKSAERAAPAAANLDPSKNDQ 338
BLAST of mRNA_Ecto-sp6_S_contig102.827.1 vs. uniprot
Match: D7G601_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G601_ECTSI) HSP 1 Score: 170 bits (430), Expect = 2.940e-45 Identity = 118/174 (67.82%), Postives = 135/174 (77.59%), Query Frame = 2 Query: 197 VRSLEDAGIDDQMRKGDRPTRKGQRSTPPGAGAVGSTVDLGTEQRGEKGPMRKKASKGASVDPLDVDSGASEQSVPKGRQKASVKTREAGGXXXXXXXXXXXXXXX---KVSE--SESESFTTHTIRSARRKMTPEQRKQLTEISKSTCPDRMKERNTALAAADEVSRKREAKL 703 V ++ + D+ RKG RPTRKGQRST P AGA G VDL EQRGE+G RKKASKGAS DPLDVDSG SEQ P+G++KASVKTR+AG XXXXXXXXXXXXXXX VSE SESES TT T+RSARRK+TPEQRK LTE+SKSTCPDR+KER+ A AA +E R+ +L Sbjct: 137 VACVDPPTLSDKQRKGGRPTRKGQRSTSPRAGAAGCPVDLAREQRGEEGATRKKASKGASGDPLDVDSGVSEQPAPRGKKKASVKTRKAGXXXXXXXXXXXXXXXXVSEPVSEFESESESDTTRTLRSARRKVTPEQRKNLTEMSKSTCPDRIKERDAAFAAHNESLRRGRGRL 310
BLAST of mRNA_Ecto-sp6_S_contig102.827.1 vs. uniprot
Match: A0A6H5JAW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAW4_9PHAE) HSP 1 Score: 117 bits (292), Expect = 7.530e-28 Identity = 65/105 (61.90%), Postives = 72/105 (68.57%), Query Frame = 2 Query: 1076 ASLKVMREWRAALHRLRLIRVEGVNASITTIQNDSTD-RDGNVVKALVGNPMPTTKRWLLQLAAVDVCHDDTCCPETKLLKDAVKTHAIKAGDTETPVASGKPAS 1387 ASLK+MREWRAALHRLR R+EGVNA+ +D D DG + RWL Q AAVDVCHDDTCCPE KLLKDAVKTH I+A DTE PVAS +P S Sbjct: 28 ASLKMMREWRAALHRLRNTRIEGVNAA----HDDPKDSEDGEWL------------RWLRQRAAVDVCHDDTCCPEAKLLKDAVKTHPIEADDTEEPVASAEPKS 116
BLAST of mRNA_Ecto-sp6_S_contig102.827.1 vs. uniprot
Match: A0A6H5JHM4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHM4_9PHAE) HSP 1 Score: 115 bits (287), Expect = 4.090e-24 Identity = 81/189 (42.86%), Postives = 88/189 (46.56%), Query Frame = 2 Query: 1046 QGAGDGEADE---------------------ASLKVMREWRAALHRLRLIRVEGVNASITTIQNDSTDRDGNVVKALVGNPMPTT---------------------------------------------KRWLLQLAAVDVCHDDTCCPETKLLKDAVKTHAIKAGDTETPVASGKPASAKEKDGKTK 1414 QGAGDG+ADE ASLK MREWR AL+R NDS D DGNVV+ALVGNPMP + +RWLL LAAV+VCHDDT PETKLLKDAV H I A DTE PVAS KP SA+ K GKTK Sbjct: 10 QGAGDGKADEIEDPSLVHFRACLAGALPWKKASLKAMREWREALYR-----------------NDSKDGDGNVVEALVGNPMPASNRRLHVLAHHSPSSFLCACTCTVGWLINLDVLPVLPWPAFLPCHPRRWLLLLAAVNVCHDDTWYPETKLLKDAVNMHPIVADDTEKPVASAKPKSAERKGGKTK 181 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig102.827.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig102.827.1 >prot_Ecto-sp6_S_contig102.827.1 ID=prot_Ecto-sp6_S_contig102.827.1|Name=mRNA_Ecto-sp6_S_contig102.827.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=420bp MDRLVAGFVRSLEDAGIDDQMRKGDRPTRKGQRSTPPGAGAVGSTVDLGTback to top mRNA from alignment at Ecto-sp6_S_contig102:1955..7707+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig102.827.1 ID=mRNA_Ecto-sp6_S_contig102.827.1|Name=mRNA_Ecto-sp6_S_contig102.827.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5753bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:1955..7707+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig102:1955..7707+ >mRNA_Ecto-sp6_S_contig102.827.1 ID=mRNA_Ecto-sp6_S_contig102.827.1|Name=mRNA_Ecto-sp6_S_contig102.827.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1260bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:1955..7707+ (Ectocarpus species6 EcLAC_371)back to top |