mRNA_Ecto-sp6_S_contig102.857.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig102.857.1 vs. uniprot
Match: D7G6V3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6V3_ECTSI) HSP 1 Score: 91.3 bits (225), Expect = 1.650e-17 Identity = 56/155 (36.13%), Postives = 81/155 (52.26%), Query Frame = -2 Query: 7 MQRYSSVFARECERVERERLLRPGHGAVNIHQPIRTLGELKTDVMNVMNDTLNNWIDPVDHLD-----------VLPHMLLPQLFKECLKEVKDRHSDITAVLFPTRKTTETMRSH--LLKNHKELFFLVPSDEQNKALERILKGVSGYLCRFPF 432
+Q Y RE RL PGH AV++ QPI L +LK NVM+D+LN WI V+ + P +LP+LF EC EV+ R+ + VL + + M+ H + +HK+LF L+P ++ N A++RIL+GV YL F
Sbjct: 297 LQEYKEEVDRELSGAMVARLNNPGHDAVDLDQPIFNLEKLKEVTANVMDDSLNEWIARVNEWGDKTGGSRAGGGITPQAVLPRLFWECSDEVETRYRVVEDVL----RVVDKMKMHENMCNHHKDLFHLMPREDCNVAIQRILRGVRSYLADHSF 447 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig102.857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig102.857.1 >prot_Ecto-sp6_S_contig102.857.1 ID=prot_Ecto-sp6_S_contig102.857.1|Name=mRNA_Ecto-sp6_S_contig102.857.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=120bp MLTAPWPGRRSLSLSTLSHSRANTDEYLCIQFIPSDSIVRGSSTVDGGFAback to top mRNA from alignment at Ecto-sp6_S_contig102:337493..338195+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig102.857.1 ID=mRNA_Ecto-sp6_S_contig102.857.1|Name=mRNA_Ecto-sp6_S_contig102.857.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=703bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:337493..338195+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig102:337493..338195+ >mRNA_Ecto-sp6_S_contig102.857.1 ID=mRNA_Ecto-sp6_S_contig102.857.1|Name=mRNA_Ecto-sp6_S_contig102.857.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=360bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:337493..338195+ (Ectocarpus species6 EcLAC_371)back to top |