mRNA_Ecto-sp6_S_contig102.850.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig102.850.1
Unique NamemRNA_Ecto-sp6_S_contig102.850.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig102.850.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig102contigEcto-sp6_S_contig102:257894..258285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size393
Hectar predicted targeting categoryother localisation
Exons1
Cds size390
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348735.3689218-CDS-Ecto-sp6_S_contig102:257893..2582831682348735.3689218-CDS-Ecto-sp6_S_contig102:257893..258283Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig102 257894..258283 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig102.850.1prot_Ecto-sp6_S_contig102.850.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig102 257894..258283 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig102.850.1

>prot_Ecto-sp6_S_contig102.850.1 ID=prot_Ecto-sp6_S_contig102.850.1|Name=mRNA_Ecto-sp6_S_contig102.850.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=130bp
AVGPVATEEVRVKLGSGAHWEVLSQDRTIDNVKATVAHDNTSSPVSSGFL
STHQKDFSTYIPFDCGYISGCSRSSVFSMNSNQHPQQEQAPPPPPPPPTT
TTTTTTPLQPPLQHQQALCALATSTVPHLP
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mRNA from alignment at Ecto-sp6_S_contig102:257894..258285+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig102.850.1 ID=mRNA_Ecto-sp6_S_contig102.850.1|Name=mRNA_Ecto-sp6_S_contig102.850.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=392bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:257894..258285+ (Ectocarpus species6 EcLAC_371)
GCGGTTGGGCCTGTGGCCACGGAAGAGGTCCGTGTTAAGTTGGGCAGCGG
CGCGCATTGGGAAGTGTTGAGCCAAGACCGAACGATTGATAATGTGAAAG
CAACGGTAGCACATGACAATACGAGTTCACCAGTTTCCAGCGGGTTTCTC
TCCACTCACCAAAAAGACTTCAGCACATACATCCCTTTCGACTGTGGTTA
TATCTCGGGTTGTAGTCGTTCTTCGGTGTTTTCTATGAACAGTAACCAAC
ACCCACAACAGGAACAAGCGCCGCCACCACCACCACCACCACCAACAACA
ACAACAACAACAACAACACCTCTACAACCACCATTGCAACACCAACAAGC
ATTGTGCGCACTTGCTACCTCTACCGTACCACACCTCCCTCA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig102:257894..258285+

>mRNA_Ecto-sp6_S_contig102.850.1 ID=mRNA_Ecto-sp6_S_contig102.850.1|Name=mRNA_Ecto-sp6_S_contig102.850.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=390bp|location=Sequence derived from alignment at Ecto-sp6_S_contig102:257894..258285+ (Ectocarpus species6 EcLAC_371)
GCGGTTGGGCCTGTGGCCACGGAAGAGGTCCGTGTTAAGTTGGGCAGCGG
CGCGCATTGGGAAGTGTTGAGCCAAGACCGAACGATTGATAATGTGAAAG
CAACGGTAGCACATGACAATACGAGTTCACCAGTTTCCAGCGGGTTTCTC
TCCACTCACCAAAAAGACTTCAGCACATACATCCCTTTCGACTGTGGTTA
TATCTCGGGTTGTAGTCGTTCTTCGGTGTTTTCTATGAACAGTAACCAAC
ACCCACAACAGGAACAAGCGCCGCCACCACCACCACCACCACCAACAACA
ACAACAACAACAACAACACCTCTACAACCACCATTGCAACACCAACAAGC
ATTGTGCGCACTTGCTACCTCTACCGTACCACACCTCCCT
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