mRNA_Ecto-sp6_S_contig101.826.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig101.826.1
Unique NamemRNA_Ecto-sp6_S_contig101.826.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig101.826.1 vs. uniprot
Match: D7FQN8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQN8_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 1.940e-44
Identity = 126/127 (99.21%), Postives = 127/127 (100.00%), Query Frame = 1 
Query:    7 DTRANERAALVGDISSSVDRSVRRGMVETVATPLAKLVVSTARQVVVDPLQASMSTMHGHQQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAGNVRRELLESREDLSRDISRAVASAVQEPVG 387
            DTRANERAALVGDISSSVDRSVRRGMVETVATPLAKLVVSTARQVVVDPLQASMSTMHGHQQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAGNVRRELLESREDLSRDISR+VASAVQEPVG
Sbjct: 1399 DTRANERAALVGDISSSVDRSVRRGMVETVATPLAKLVVSTARQVVVDPLQASMSTMHGHQQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAGNVRRELLESREDLSRDISRSVASAVQEPVG 1525
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig101.826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQN8_ECTSI1.940e-4499.21Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig101contigEcto-sp6_S_contig101:639307..641561 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score166.0
Seed ortholog evalue1.2e-38
Seed eggNOG ortholog2880.D7FQN8
Model size388
KEGG koko:K08592,ko:K12616
KEGG Pathwayko03018,map03018
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.deadenylation-independent decapping of nuclear-transcribed mRNA
EggNOG OGsKOG1916@1,KOG1916@2759
EC3.4.22.68
Cds size387
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03019,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348735.080421-CDS-Ecto-sp6_S_contig101:639306..6394381682348735.080421-CDS-Ecto-sp6_S_contig101:639306..639438Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 639307..639438 -
1682348735.0940864-CDS-Ecto-sp6_S_contig101:640401..6404971682348735.0940864-CDS-Ecto-sp6_S_contig101:640401..640497Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 640402..640497 -
1682348735.1115222-CDS-Ecto-sp6_S_contig101:641402..6415611682348735.1115222-CDS-Ecto-sp6_S_contig101:641402..641561Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 641403..641561 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig101.826.1prot_Ecto-sp6_S_contig101.826.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig101 639307..641561 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig101.826.1

>prot_Ecto-sp6_S_contig101.826.1 ID=prot_Ecto-sp6_S_contig101.826.1|Name=mRNA_Ecto-sp6_S_contig101.826.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=129bp
MSDTRANERAALVGDISSSVDRSVRRGMVETVATPLAKLVVSTARQVVVD
PLQASMSTMHGHQQRQQQALAAAAAAGAQAGVQSQAAGMATATARAQAGN
VRRELLESREDLSRDISRAVASAVQEPVG
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mRNA from alignment at Ecto-sp6_S_contig101:639307..641561-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig101.826.1 ID=mRNA_Ecto-sp6_S_contig101.826.1|Name=mRNA_Ecto-sp6_S_contig101.826.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2255bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:639307..641561- (Ectocarpus species6 EcLAC_371)
ATGTCAGACACGAGAGCCAACGAGCGCGCAGCGCTAGTGGGAGACATCTC
TTCGTCCGTGGACCGCAGCGTGAGGAGGGGCATGGTGGAGACGGTGGCGA
CCCCCCTCGCGAAGCTGGTGGTCAGCACCGCGCGCCAGGTCGTGGTCGAC
CCTCTACAGGTGTGCGCTTGTGGTGTATATTTTATTTTCCTTACAAGGAA
CATGACAAATCCATCTCTCCCACAGATAAGATTCCGGGTAGATTGGCAAT
GATTTTGTAGTGTTGTACGGTGACATACAGCGATATCTCCCCTGTGGGTA
ACACGCTCCGCAAGAAAGTTAGGTGGGCATCTTGTGTATCTGGTGGTGTG
CTTGTTTCGCGTGTGTTTTGCTTTGAGGTCGTCGACCATCGCGCCAAGGG
CGACACATACCGTGGGCGACACGAGATGCCACACTCTTTTGATCGATTTT
GTCAAAGCTCCATTGCTCCGCGACGAAGAGGATGGTACGAATCAAACGAC
GTGTTTTCGGAAAGCTCTCGACGAGACGGTGGCGGCACGCTAGTTTGCGG
CACCGCCTCTCTTTCTGCCGTGGCGAAATCAGCTCTAGTAGTCCGTCATG
GCGGTGTGGCATCTTATGTCACCTACCTATCGTGGTTCGGCAGTGGGAAG
GCTTAAGCCCAAGGGCGAGACGCGGTCGTAAGGGTTTGGTCTCGGCGTGT
GTTTGTCTGTGCAAGACTTTTGGGGCCGTGTTTTACCGTGGGAGTTTGCG
GTGCGTCTTGTAGTGGCGATGGCGAGAGAGCTTTCTCGTGGCGTTTTGGC
CAACCACGCGCGCGATCGAAACGTCCCGTTTGTGTCGGAATCCCACAAGC
CGTATGCAATACAACGCTACGGGTACACGAAGCAGCAGACCGGCTTGATC
AGACGTCCTCTCTCTGCCTATTATTTGAGTGGTTGATGGATGCAATGTCG
CAACGAACGACCCCCCTCCCCCCCTCGTGTCAATGGTCTAACGACTACGG
CATGTACACCCCCCCCCCCCCCCCCCCCGGTTGCGTACCCATCGGCCGAA
TCGTACCCGCGTAGGCGTCCATGTCCACCATGCATGGCCACCAGCAGAGG
CAACAACAAGCACTGGCGGCGGCCGCGGCTGCGGGTGCCCAGGCGGGCGT
GCAGTCGCAGGTAAATCGAGAGCATCGGTAGGGCTAGAGGGTCAGAACAA
CTGGTTGAAACGCGCTTTGTCCTGCATGCAAGTCATAGGTCGCGCGGAGA
GAGAGATGAGCGGAATGTTTGGGCGGCACGTTTCCCCAGTCTTGGCTGCA
TCATAGCTGGTGTCTGGTGTTATTCTGTTGTTGGTAAATCGCTCGAACCT
AAGGCCGGGTGTCAAACGCGAACCTTCATGCCACTCCACACAATCGGTTT
CATCCAGCTTTTTTGGGTTTAGTAGCGCGTGCCTGTCCCGCGAAAACACA
CACATGCATAGCTGTCCTCCTATCCATTAAGGCGGGAGACAAACAATGCA
GTGACCGCTCGTCCTGCTGATGATGCGCCCGATTTCGGTTGCAAGCTGTT
CTTTTCTGTCGCGGGGCTATGACCCGAAGATTCGTGGTAGCACCCCTGCC
GCTGGCTGCTTCGGTCGGCATGGGTTGCGGCAACGAACTGACTGGATTCC
GTCGTTGCAGATCCCCCATGTGTGCTTGTTGCTCCATTCTGAGCCTCTCC
TTGACTTGTTGTCATCGCTCACCGTAGGTGGTCATTGACGAGACGGCAAC
GAGCCAGTCAGTTCAGAGGTACCGTATGTAGCAGTGCGAGTTATCGCACG
CCCCCCAGACCAACTTTCAAAGCCCGATTGCCCCATAAACAAGGGTACCA
TACCAAAACCGACCGATGTTCTACGTGCAAGGAAAGGTAGCTCTCGACGA
GATACATCTGTCCAAGCTACCCCTTTCTCGGCATTGTTCCGCCTCTTGTG
GAGCCAATCGAGCTGCGAACCTCGGTCTAGGGAACGCGCGATAACTCAAA
ACACTCTCTACGGTTTTCGCTGGAAAGCAATGCAAGCCTGTCGAAGGCGT
ATGTCGGCCCCACCGACTTGCCCGCACGACCTGAATGCTGGTTGTCCATC
CTGCGTTGTTCGTGTTTCGACAGGCGGCTGGGATGGCGACGGCGACCGCT
CGAGCCCAGGCAGGCAATGTCCGGCGGGAGTTGCTTGAGAGCCGGGAAGA
CCTGTCGAGGGACATTTCGAGGGCCGTGGCTTCGGCTGTTCAGGAGCCCG
TCGGG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig101:639307..641561-

>mRNA_Ecto-sp6_S_contig101.826.1 ID=mRNA_Ecto-sp6_S_contig101.826.1|Name=mRNA_Ecto-sp6_S_contig101.826.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=387bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:639307..641561- (Ectocarpus species6 EcLAC_371)
ATGTCAGACACGAGAGCCAACGAGCGCGCAGCGCTAGTGGGAGACATCTC
TTCGTCCGTGGACCGCAGCGTGAGGAGGGGCATGGTGGAGACGGTGGCGA
CCCCCCTCGCGAAGCTGGTGGTCAGCACCGCGCGCCAGGTCGTGGTCGAC
CCTCTACAGGCGTCCATGTCCACCATGCATGGCCACCAGCAGAGGCAACA
ACAAGCACTGGCGGCGGCCGCGGCTGCGGGTGCCCAGGCGGGCGTGCAGT
CGCAGGCGGCTGGGATGGCGACGGCGACCGCTCGAGCCCAGGCAGGCAAT
GTCCGGCGGGAGTTGCTTGAGAGCCGGGAAGACCTGTCGAGGGACATTTC
GAGGGCCGTGGCTTCGGCTGTTCAGGAGCCCGTCGGG
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