mRNA_Ecto-sp6_S_contig101.820.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig101.820.1 vs. uniprot
Match: D8LMZ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMZ8_ECTSI) HSP 1 Score: 896 bits (2316), Expect = 0.000e+0 Identity = 525/581 (90.36%), Postives = 529/581 (91.05%), Query Frame = 1 Query: 1 MMIKRIMMLGAWAFVACCPIANSFVYRSSVQHNTFNANSMLGRKQRGEVGKTIEVPSGKTIDGAGVGRSSGAVAIEEKVRIPRVPSALDTEGITRRVDSPLHILGEGGDGEGVPVPHEEEFVPVVSEGAKSPSNGDQHDVTQQXXXXXXXXXXXXXXXXXXXXXXXGSRPRGRYPGWTVRWKGFQRHRYRSGLSGLRSTSPTGPGVGDGLCSICDIEHTPNEAAAPTTGQVGYHDPASEPSLGICTSDMKSVPVESRSTEKYGTATIAESSEVANNHSRHGLEKAKASSELPSCAVDARSLQKRVEPIQDDKSSALTHGESSPAHTRIAREAVFDGQGHDRKKVGRSYPHEDTGRSFFSLHLQQFDGPEDFNQGPSLTFPYFPAEIPPPPVQSGATPAATAATGYGTASRSTPPDPTTNSHAEAPAEESPDYVDMLTAALHDAWGRGTIRGTSHLPTQDGTTSARQSSAWWXXXXXXXXXXXXXXXXXXXXXXXXXXSSNTLSVGGTAPAEAPERVASTLSEGHREQ-------------------------AKTKDDNHGKAAPASRSPRTGGFAAGLKK 1668
MMIKRIMML AWAFVACCPIANSFVYRSSVQ NTFN NSMLGRKQRGEVGKTIEVPSGKTIDGAGVGRSSGAVAIEEKVRIPRVPSALD EGITRRVDSPLHILG+GGDGEGVPVPHEEEFVPVV EGAKSPSNGD HDVT Q XXXXXXXXXXXXXXXXXXXXXXGSRPRGRYPGWTVRWKGFQRHRYRSGLSGLRSTSPTGPGVGDGLCSICD EHTPNEAAAPTTGQVGYHDPASE SLGICTSDMKSVPVESRSTEKYGTATI ESSEVANNHSRHGLEKAKAS ELPSCAVDARSLQKRVEPIQDDKSSA TH SSPAHTRIAREAV DGQGHDRKKVGRSYPHEDTGRSFFSLHLQQFDGPEDFNQGPSLTFPYFPAEIPPPPVQSGATPAATAATGYGTASRSTPPDPTTNS AEAPAEESPDYVDMLTAALHDAWGRGTIRGTSHLPTQDGTT+ARQSSAWWXXXXXXXXXXXXXXXXXXXXXXXXXX SNTLSVGGTAPAEA ERVASTLSEGHREQ AKTKDDN GKAAPAS SP+ G L+K
Sbjct: 1 MMIKRIMMLAAWAFVACCPIANSFVYRSSVQRNTFNTNSMLGRKQRGEVGKTIEVPSGKTIDGAGVGRSSGAVAIEEKVRIPRVPSALDPEGITRRVDSPLHILGKGGDGEGVPVPHEEEFVPVVREGAKSPSNGDHHDVTHQQXXXXXXXXXXXXXXXXXXXXXXGSRPRGRYPGWTVRWKGFQRHRYRSGLSGLRSTSPTGPGVGDGLCSICDKEHTPNEAAAPTTGQVGYHDPASETSLGICTSDMKSVPVESRSTEKYGTATIVESSEVANNHSRHGLEKAKASLELPSCAVDARSLQKRVEPIQDDKSSAPTHDGSSPAHTRIAREAVSDGQGHDRKKVGRSYPHEDTGRSFFSLHLQQFDGPEDFNQGPSLTFPYFPAEIPPPPVQSGATPAATAATGYGTASRSTPPDPTTNSPAEAPAEESPDYVDMLTAALHDAWGRGTIRGTSHLPTQDGTTAARQSSAWWXXXXXXXXXXXXXXXXXXXXXXXXXXXSNTLSVGGTAPAEASERVASTLSEGHREQTTYNDNHPRKVSPTPAIAEDREASKAKTKDDNPGKAAPASHSPKNGRIRRWLEK 581
BLAST of mRNA_Ecto-sp6_S_contig101.820.1 vs. uniprot
Match: D8LMZ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMZ0_ECTSI) HSP 1 Score: 651 bits (1679), Expect = 3.810e-231 Identity = 357/372 (95.97%), Postives = 359/372 (96.51%), Query Frame = 1 Query: 1 MMIKRIMMLGAWAFVACCPIANSFVYRSSVQHNTFNANSMLGRKQRGEVGKTIEVPSGKTIDGAGVGRSSGAVAIEEKVRIPRVPSALDTEGITRRVDSPLHILGEGGDGEGVPVPHEEEFVPVVSEGAKSPSNGDQHDVTQQXXXXXXXXXXXXXXXXXXXXXXXGSRPRGRYPGWTVRWKGFQRHRYRSGLSGLRSTSPTGPGVGDGLCSICDIEHTPNEAAAPTTGQVGYHDPASEPSLGICTSDMKSVPVESRSTEKYGTATIAESSEVANNHSRHGLEKAKASSELPSCAVDARSLQKRVEPIQDDKSSALTHGESSPAHTRIAREAVFDGQGHDRKKVGRSYPHEDTGRSFFSLHLQQFDGPEDFN 1116
MMIKRIMML AWAFVACCPIANSFVYRSSVQ NTFN NSMLGRKQRGEVGKTIEVPSGKTIDGAGVGRS+GAVAIEEKVRIPRVPSALD EGITRRVDSPLHILG+GGDGEGVPVPHEEEFVPVV EGAKS SNGDQHDVTQ XXXXXXXXXXXXXXXXXXXXXXXGSRPRGRYPGWTVRWKGFQRHRYRSGLSGLRSTSPTGPGVGDGLCSICDIEHTPNEAAAPTTGQVGYHDPASE SLGICTSDMKSVPVESRSTEKYGTATIAESSEVANNHSRHGLEKAKAS ELPSCAVDARSLQKRVEPIQDDKSSA TH SSPAHTRIAREAV DGQGHDRKKVGRSYPHEDTGRSFFSLHLQQFDGPEDFN
Sbjct: 1 MMIKRIMMLAAWAFVACCPIANSFVYRSSVQRNTFNTNSMLGRKQRGEVGKTIEVPSGKTIDGAGVGRSNGAVAIEEKVRIPRVPSALDPEGITRRVDSPLHILGKGGDGEGVPVPHEEEFVPVVREGAKSSSNGDQHDVTQXXXXXXXXXXXXXXXXXXXXXXXXGSRPRGRYPGWTVRWKGFQRHRYRSGLSGLRSTSPTGPGVGDGLCSICDIEHTPNEAAAPTTGQVGYHDPASETSLGICTSDMKSVPVESRSTEKYGTATIAESSEVANNHSRHGLEKAKASLELPSCAVDARSLQKRVEPIQDDKSSAPTHDGSSPAHTRIAREAVSDGQGHDRKKVGRSYPHEDTGRSFFSLHLQQFDGPEDFN 372
BLAST of mRNA_Ecto-sp6_S_contig101.820.1 vs. uniprot
Match: A0A6H5JTQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTQ0_9PHAE) HSP 1 Score: 487 bits (1253), Expect = 1.390e-153 Identity = 267/363 (73.55%), Postives = 279/363 (76.86%), Query Frame = 1 Query: 499 GSRPRGRYPGWTVRWKGFQRHRYRSGLSGLRSTSPTGPGVGDGLCSICDIEHTPNEAAAPTTGQVGYHDPASEPSLGIC--TSDMKSVPVESRSTEKYGTATIAESSEVANNHSRHGLEKAKASSELPSCAVDARSLQKRVEPIQDDKSSALTHGESSPAHTRIAREAVFDGQGHDRKKVGRSYPHEDTGRSFFSLHLQQFDGPEDFNQGPSLTFPYFPAEIPPPPVQSGATPAATAATGYGTASRSTPPDPTTNSHAEAPAEESPDYVDMLTAALHDAWGRGTIRGTSHLPTQDGTTSARQSSAWWXXXXXXXXXXXXXXXXXXXXXXXXXXSSNTLSVGGTAPAEAPERVASTLSEGHREQ 1581
GSRPRGRYPGWTVRW+G QR+ RSGLS LRSTSP G GVGDG CSICDIEHTP+EAAAPTTG VGY D A+ SLGI +SD KSV VESRSTEKYG IAESS NNHS H LEK K SSELPS VDARSLQKRVEPIQDDKSSA H SSPAH RIAREAV DGQGHDRK+VGRSY HEDTGRSFFSL LQQFD PEDFNQGPSLTFPYFP EI PPVQ GA P ATAA G+GT+SRSTPP TT+S AEAPA ESPDYVD+LTAALHDAWGRG IRGTS+ P QDGTT+ARQSSAWW SSN LSVGGTAPAEAPE V TLSEG EQ
Sbjct: 1002 GSRPRGRYPGWTVRWEGVQRYCCRSGLSRLRSTSPAGAGVGDGFCSICDIEHTPHEAAAPTTGAVGYPDSAASSSLGISGPSSDTKSVAVESRSTEKYGITAIAESSGANNNHSHHALEKTKGSSELPSRVVDARSLQKRVEPIQDDKSSAPMHDGSSPAHIRIAREAVSDGQGHDRKRVGRSYRHEDTGRSFFSLQLQQFDAPEDFNQGPSLTFPYFPEEISRPPVQPGAIPPATAAAGHGTSSRSTPPPRTTDSAAEAPAGESPDYVDILTAALHDAWGRGAIRGTSNEPAQDGTTAARQSSAWWHPEEAGVDADDLPQVFHDAWRKRGVRSSNALSVGGTAPAEAPEWVPPTLSEGRCEQ 1364
BLAST of mRNA_Ecto-sp6_S_contig101.820.1 vs. uniprot
Match: A0A6H5JPB1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB1_9PHAE) HSP 1 Score: 198 bits (504), Expect = 1.240e-56 Identity = 100/111 (90.09%), Postives = 104/111 (93.69%), Query Frame = 1 Query: 1 MMIKRIMMLGAWAFVACCPIANSFVYRSSVQHNTFNANSMLGRKQRGEVGKTIEVPSGKTIDGAGVGRSSGAVAIEEKVRIPRVPSALDTEGITRRVDSPLHILGEGGDGE 333
MMIKRIM+LGAWAFVACCPIANSFVYR S +TFN NSMLGRKQRGEVGKTI VPSGKTIDGAGVGRSSGAVAIEEK+RIPRVPSALD EGITRRVDSPLHILG+GGDGE
Sbjct: 3 MMIKRIMILGAWAFVACCPIANSFVYRFSPMQHTFNTNSMLGRKQRGEVGKTIGVPSGKTIDGAGVGRSSGAVAIEEKLRIPRVPSALDPEGITRRVDSPLHILGKGGDGE 113
BLAST of mRNA_Ecto-sp6_S_contig101.820.1 vs. uniprot
Match: A0A6H5JJF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJF2_9PHAE) HSP 1 Score: 189 bits (481), Expect = 1.540e-54 Identity = 94/113 (83.19%), Postives = 101/113 (89.38%), Query Frame = 1 Query: 1 MMIKRIMMLGAWAFVACCPIANSFVYRSSVQHNTFNANSMLGRKQRGEVGKTIEVPSGKTIDGAGVGRSSGAVAIEEKVRIPRVPSALDTEGITRRVDSPLHILGEGGDGEGV 339
MMIKRIMML AWA +ACCPIANSF+YRSSVQH TFN NSMLGRKQRGEVGKT PSGKT++GAGVGRSSGAVAIEEKVRIPRVPS LD E +TRRVDSP HILG+GGDGE +
Sbjct: 3 MMIKRIMMLAAWALIACCPIANSFIYRSSVQH-TFNTNSMLGRKQRGEVGKTTAAPSGKTVEGAGVGRSSGAVAIEEKVRIPRVPSTLDPERVTRRVDSPFHILGKGGDGEAI 114
BLAST of mRNA_Ecto-sp6_S_contig101.820.1 vs. uniprot
Match: A0A6H5JJM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJM1_9PHAE) HSP 1 Score: 110 bits (274), Expect = 1.630e-24 Identity = 59/101 (58.42%), Postives = 64/101 (63.37%), Query Frame = 1 Query: 1279 EESPDYVDMLTAALHDAWGRGTIRGTSHLPTQDGTTSARQSSAWWXXXXXXXXXXXXXXXXXXXXXXXXXXSSNTLSVGGTAPAEAPERVASTLSEGHREQ 1581
EESPD VDM TAALHDAWGRG I GTSH+P +DGTT+ARQSSAWW SSN LSVGGTA EA +R+ STLSEGH EQ
Sbjct: 34 EESPDCVDMSTAALHDAWGRGAIWGTSHVPPRDGTTAARQSSAWWPSEEAGVHADDLPQVFHDAWRKRGGRSSNALSVGGTASVEALQRLPSTLSEGHGEQ 134
BLAST of mRNA_Ecto-sp6_S_contig101.820.1 vs. uniprot
Match: D7FQP4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQP4_ECTSI) HSP 1 Score: 81.6 bits (200), Expect = 2.370e-12 Identity = 41/51 (80.39%), Postives = 43/51 (84.31%), Query Frame = 3 Query: 462 RWARAPAPAPPPRFEATGSIPWLDCSLEGVPTTPLQEWVVRATLNVTNRAR 614
R A+A APAPPPRFEATGS+PWL CSLEGVP T LQ VVRATLNVTNR R
Sbjct: 788 RAAKARAPAPPPRFEATGSMPWLGCSLEGVPPTLLQGEVVRATLNVTNRGR 838
BLAST of mRNA_Ecto-sp6_S_contig101.820.1 vs. uniprot
Match: A0A6H5JPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPY7_9PHAE) HSP 1 Score: 80.1 bits (196), Expect = 7.580e-12 Identity = 39/51 (76.47%), Postives = 43/51 (84.31%), Query Frame = 3 Query: 462 RWARAPAPAPPPRFEATGSIPWLDCSLEGVPTTPLQEWVVRATLNVTNRAR 614
R ++A APAPPPRFEATGS+PWL CSLEG+P T LQ VVRATLNVTNR R
Sbjct: 1193 RASKARAPAPPPRFEATGSMPWLGCSLEGIPPTLLQGEVVRATLNVTNRGR 1243 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig101.820.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig101.820.1 >prot_Ecto-sp6_S_contig101.820.1 ID=prot_Ecto-sp6_S_contig101.820.1|Name=mRNA_Ecto-sp6_S_contig101.820.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=576bp MMIKRIMMLGAWAFVACCPIANSFVYRSSVQHNTFNANSMLGRKQRGEVGback to top mRNA from alignment at Ecto-sp6_S_contig101:547735..552357+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig101.820.1 ID=mRNA_Ecto-sp6_S_contig101.820.1|Name=mRNA_Ecto-sp6_S_contig101.820.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4623bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:547735..552357+ (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig101:547735..552357+ >mRNA_Ecto-sp6_S_contig101.820.1 ID=mRNA_Ecto-sp6_S_contig101.820.1|Name=mRNA_Ecto-sp6_S_contig101.820.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1728bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:547735..552357+ (Ectocarpus species6 EcLAC_371)back to top |