mRNA_Ecto-sp6_S_contig101.817.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig101.817.1
Unique NamemRNA_Ecto-sp6_S_contig101.817.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig101.817.1 vs. uniprot
Match: A0A6H5JP88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP88_9PHAE)

HSP 1 Score: 673 bits (1737), Expect = 5.280e-238
Identity = 411/521 (78.89%), Postives = 422/521 (81.00%), Query Frame = 1 
Query:    1 MSPPYRLPQWPPRSSAPQDPQHFKPRGGGNYYDNGSDPSHQLDDD-ATNLVTGGRDSRQQQQQCRPADDLPDESFLGVPIFRGDVVLEAEEDGGGTCSNLELSLLDDDHAAAASTTMPGGERVSPRWNSGNRAEQRATTTEPVASARQAISSSTPLRVRFAPDVGDEGTALRAAAEASPSPPPPLAARADRRGEENEDVSASGSSCFVRHRNGMHTAWRRKAAVPDNPRQPLQATVAAAPAEPPNXXXXXXXXXXXXXXKRDPVAPIRRKGVMSADQLIAQSMSSTQQQQQPVRLFLRRSRPPVSPEPAGKENVRAVAVLRETKGSIVGARRVNGSQQAFPLPWGGTHSPVTGVQLNRARPDGGGWGGREALLEVLXXXXXXRARPRSAQHVARSPPLTTRTSPGISTRXXXXXXXXXXXXXXXXXPSTPVAASA----APLSSVAIRENLARVARTSKVGTKADPVHLYRQRQELEQARTKKAAAVARSRRKPTNREGRLAGGCSAWGTGTAGGWVGVNS 1548
            MSPPYRLPQWPP+SSAPQDPQHF P   G+YYDNGSDPS QLDDD  T LV  GRDS +QQ QCRPADDL DESFLGVPIFRGDVV + EEDGGG  SNLELS LDDDHAAAASTTMPGGER SP WNSGNRAEQRATTTEPV S   A+SSSTP+RVRFAPDVGD GTAL  AAEASPS     AARADRRG+ENE V ASGSSCFVRHRNGMHTAWRRKA VPDNPRQPLQ TVAAA AEPPN    XXXXXXXXXX                                PVRLFLRRSR PVSPEPAGKENVR  AVL+ETKGS+ GARR NGSQQAFPLPWGGTHSPVTG+QLNRARPDGGGWGGREALLEVL XXXXXRARPRSAQHVARSPPLTTR SP ISTRXXXXXXXXXXXXXXXXX             APLSSVAIRENLARVARTSKVGTKADPVHLYRQRQELEQARTKKAA VARSRRKPT+REGR  GG S WGTGTAGGWVGVNS
Sbjct:    1 MSPPYRLPQWPPQSSAPQDPQHFNPPRRGDYYDNGSDPSRQLDDDDVTTLVADGRDSWKQQ-QCRPADDLADESFLGVPIFRGDVVRDTEEDGGG--SNLELSFLDDDHAAAASTTMPGGERASPTWNSGNRAEQRATTTEPVVSVGPAVSSSTPMRVRFAPDVGDGGTALLEAAEASPSXXXXXAARADRRGDENEHVFASGSSCFVRHRNGMHTAWRRKAVVPDNPRQPLQVTVAAARAEPPNGVIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVRLFLRRSRLPVSPEPAGKENVRPAAVLKETKGSVAGARRANGSQQAFPLPWGGTHSPVTGMQLNRARPDGGGWGGREALLEVLTXXXXXRARPRSAQHVARSPPLTTRISPSISTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPLSSVAIRENLARVARTSKVGTKADPVHLYRQRQELEQARTKKAAGVARSRRKPTSREGRPTGGISVWGTGTAGGWVGVNS 518
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig101.817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JP88_9PHAE5.280e-23878.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig101contigEcto-sp6_S_contig101:522175..523776 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1602
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-16_001200.1
Cds size1602
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348734.3548129-CDS-Ecto-sp6_S_contig101:522174..5237761682348734.3548129-CDS-Ecto-sp6_S_contig101:522174..523776Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 522175..523776 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig101.817.1prot_Ecto-sp6_S_contig101.817.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig101 522175..523776 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig101.817.1

>prot_Ecto-sp6_S_contig101.817.1 ID=prot_Ecto-sp6_S_contig101.817.1|Name=mRNA_Ecto-sp6_S_contig101.817.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=534bp
MSPPYRLPQWPPRSSAPQDPQHFKPRGGGNYYDNGSDPSHQLDDDATNLV
TGGRDSRQQQQQCRPADDLPDESFLGVPIFRGDVVLEAEEDGGGTCSNLE
LSLLDDDHAAAASTTMPGGERVSPRWNSGNRAEQRATTTEPVASARQAIS
SSTPLRVRFAPDVGDEGTALRAAAEASPSPPPPLAARADRRGEENEDVSA
SGSSCFVRHRNGMHTAWRRKAAVPDNPRQPLQATVAAAPAEPPNGAVGGN
NNSNNNTSKRDPVAPIRRKGVMSADQLIAQSMSSTQQQQQPVRLFLRRSR
PPVSPEPAGKENVRAVAVLRETKGSIVGARRVNGSQQAFPLPWGGTHSPV
TGVQLNRARPDGGGWGGREALLEVLTTPPPPRARPRSAQHVARSPPLTTR
TSPGISTRRAVVVVDDNTPPPRRRTPSTPVAASAAPLSSVAIRENLARVA
RTSKVGTKADPVHLYRQRQELEQARTKKAAAVARSRRKPTNREGRLAGGC
SAWGTGTAGGWVGVNSGGGRVGGGGGSGRVGLR*
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mRNA from alignment at Ecto-sp6_S_contig101:522175..523776-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig101.817.1 ID=mRNA_Ecto-sp6_S_contig101.817.1|Name=mRNA_Ecto-sp6_S_contig101.817.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1602bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:522175..523776- (Ectocarpus species6 EcLAC_371)
ATGTCACCACCCTATCGCCTCCCGCAATGGCCTCCACGATCCTCCGCACC
TCAAGACCCACAACATTTCAAACCTCGCGGTGGAGGCAACTACTACGACA
ACGGCAGCGATCCAAGCCATCAGCTGGACGACGACGCCACGAATCTAGTA
ACCGGCGGCAGGGACAGCCGGCAGCAGCAGCAGCAATGCCGTCCAGCAGA
CGACCTGCCCGACGAGTCCTTCCTGGGCGTGCCGATATTCCGAGGCGATG
TCGTACTCGAGGCTGAGGAAGATGGCGGCGGTACATGTAGCAATCTGGAG
CTGTCCTTGTTGGACGACGACCACGCCGCAGCAGCGTCGACGACGATGCC
GGGAGGCGAGAGGGTATCTCCTAGATGGAACAGCGGCAACCGTGCCGAAC
AACGAGCAACAACGACGGAACCAGTGGCTTCCGCCAGACAGGCCATCAGT
TCGTCGACCCCATTGAGGGTGCGATTTGCCCCCGACGTCGGCGATGAAGG
CACGGCGCTCCGAGCGGCGGCGGAGGCGTCGCCGTCGCCGCCACCACCAC
TGGCCGCAAGGGCAGACCGCCGAGGCGAGGAAAACGAGGATGTCTCCGCG
AGCGGGTCGTCGTGCTTTGTGCGCCATCGAAACGGCATGCACACGGCATG
GCGGCGGAAGGCGGCGGTGCCAGACAACCCGAGGCAGCCGTTGCAGGCCA
CCGTGGCGGCCGCCCCCGCAGAACCTCCGAACGGGGCTGTTGGCGGCAAC
AACAACAGCAATAACAACACCAGCAAAAGAGATCCCGTGGCACCTATACG
GAGGAAAGGCGTGATGAGTGCTGACCAGTTAATCGCGCAGTCGATGTCGT
CTACCCAGCAGCAGCAGCAGCCTGTAAGACTCTTTCTCCGGCGAAGCCGG
CCCCCAGTCTCTCCCGAACCTGCTGGAAAAGAAAACGTTCGCGCTGTGGC
CGTTCTTAGAGAAACCAAGGGCAGTATCGTGGGAGCGCGGCGGGTCAACG
GCAGCCAGCAAGCGTTCCCGCTGCCGTGGGGCGGCACTCACTCGCCCGTG
ACTGGTGTGCAGCTGAATCGGGCTAGACCGGACGGGGGAGGATGGGGAGG
AAGGGAGGCACTCCTAGAGGTACTGACCACACCGCCACCGCCACGGGCAC
GCCCGCGGTCGGCGCAACACGTTGCGCGTTCCCCGCCGCTGACCACCAGA
ACAAGCCCCGGGATTTCCACTCGGAGGGCCGTCGTCGTCGTTGACGACAA
CACCCCGCCCCCCAGGCGGCGAACGCCTTCGACGCCGGTGGCGGCGTCGG
CGGCCCCCCTGTCCTCCGTGGCGATCCGGGAGAACCTCGCCCGCGTCGCC
CGCACGAGCAAGGTCGGGACCAAGGCCGACCCGGTGCACCTGTACCGGCA
GAGGCAGGAGCTGGAGCAAGCGAGAACAAAGAAGGCCGCTGCCGTCGCCA
GGAGCAGGAGGAAGCCAACAAACCGCGAAGGGCGGCTCGCGGGTGGTTGT
TCCGCCTGGGGCACCGGCACGGCGGGGGGCTGGGTGGGGGTGAATTCGGG
CGGGGGAAGGGTGGGCGGCGGCGGCGGCAGCGGCAGGGTGGGCTTGCGGT
AG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig101:522175..523776-

>mRNA_Ecto-sp6_S_contig101.817.1 ID=mRNA_Ecto-sp6_S_contig101.817.1|Name=mRNA_Ecto-sp6_S_contig101.817.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1602bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:522175..523776- (Ectocarpus species6 EcLAC_371)
ATGTCACCACCCTATCGCCTCCCGCAATGGCCTCCACGATCCTCCGCACC
TCAAGACCCACAACATTTCAAACCTCGCGGTGGAGGCAACTACTACGACA
ACGGCAGCGATCCAAGCCATCAGCTGGACGACGACGCCACGAATCTAGTA
ACCGGCGGCAGGGACAGCCGGCAGCAGCAGCAGCAATGCCGTCCAGCAGA
CGACCTGCCCGACGAGTCCTTCCTGGGCGTGCCGATATTCCGAGGCGATG
TCGTACTCGAGGCTGAGGAAGATGGCGGCGGTACATGTAGCAATCTGGAG
CTGTCCTTGTTGGACGACGACCACGCCGCAGCAGCGTCGACGACGATGCC
GGGAGGCGAGAGGGTATCTCCTAGATGGAACAGCGGCAACCGTGCCGAAC
AACGAGCAACAACGACGGAACCAGTGGCTTCCGCCAGACAGGCCATCAGT
TCGTCGACCCCATTGAGGGTGCGATTTGCCCCCGACGTCGGCGATGAAGG
CACGGCGCTCCGAGCGGCGGCGGAGGCGTCGCCGTCGCCGCCACCACCAC
TGGCCGCAAGGGCAGACCGCCGAGGCGAGGAAAACGAGGATGTCTCCGCG
AGCGGGTCGTCGTGCTTTGTGCGCCATCGAAACGGCATGCACACGGCATG
GCGGCGGAAGGCGGCGGTGCCAGACAACCCGAGGCAGCCGTTGCAGGCCA
CCGTGGCGGCCGCCCCCGCAGAACCTCCGAACGGGGCTGTTGGCGGCAAC
AACAACAGCAATAACAACACCAGCAAAAGAGATCCCGTGGCACCTATACG
GAGGAAAGGCGTGATGAGTGCTGACCAGTTAATCGCGCAGTCGATGTCGT
CTACCCAGCAGCAGCAGCAGCCTGTAAGACTCTTTCTCCGGCGAAGCCGG
CCCCCAGTCTCTCCCGAACCTGCTGGAAAAGAAAACGTTCGCGCTGTGGC
CGTTCTTAGAGAAACCAAGGGCAGTATCGTGGGAGCGCGGCGGGTCAACG
GCAGCCAGCAAGCGTTCCCGCTGCCGTGGGGCGGCACTCACTCGCCCGTG
ACTGGTGTGCAGCTGAATCGGGCTAGACCGGACGGGGGAGGATGGGGAGG
AAGGGAGGCACTCCTAGAGGTACTGACCACACCGCCACCGCCACGGGCAC
GCCCGCGGTCGGCGCAACACGTTGCGCGTTCCCCGCCGCTGACCACCAGA
ACAAGCCCCGGGATTTCCACTCGGAGGGCCGTCGTCGTCGTTGACGACAA
CACCCCGCCCCCCAGGCGGCGAACGCCTTCGACGCCGGTGGCGGCGTCGG
CGGCCCCCCTGTCCTCCGTGGCGATCCGGGAGAACCTCGCCCGCGTCGCC
CGCACGAGCAAGGTCGGGACCAAGGCCGACCCGGTGCACCTGTACCGGCA
GAGGCAGGAGCTGGAGCAAGCGAGAACAAAGAAGGCCGCTGCCGTCGCCA
GGAGCAGGAGGAAGCCAACAAACCGCGAAGGGCGGCTCGCGGGTGGTTGT
TCCGCCTGGGGCACCGGCACGGCGGGGGGCTGGGTGGGGGTGAATTCGGG
CGGGGGAAGGGTGGGCGGCGGCGGCGGCAGCGGCAGGGTGGGCTTGCGGT
AG
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