mRNA_Ecto-sp6_S_contig101.814.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig101.814.1
Unique NamemRNA_Ecto-sp6_S_contig101.814.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig101.814.1 vs. uniprot
Match: D8LMZ3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMZ3_ECTSI)

HSP 1 Score: 618 bits (1593), Expect = 2.360e-218
Identity = 330/338 (97.63%), Postives = 334/338 (98.82%), Query Frame = 1 
Query:    1 MYHRVLVAGRVGSVVAGRHGVIAGGPVHHTQRGMTAVVRGSAAALPGRRWAQQPHCQGHQQQACGLSSNASQRPADGADGEGSKARRTEEQAKKVAEHKAAEMEYRLRMTALRKEVQREVKDKREADAVTAALERRRIAKRQAAARAERKRKAAISIALNEERKQQLKENYEAGYRESARVFFEREERKKNIHAILLEELEAESEHWINTPEDVTAKITDDLWEVPGNNTAKGQISMPDEHLWRFSADVGLYNQEEEPSERDPYLRSRMYSRMQEMHTAGTYARERRTRWDNDTRGLLKEADRLLRKKRPGPPGYMSRLESSRKATQWKPMEAQFGDE 1014
            MYHRVLVAGRVGSVVAGRHGVIAGGPVHHTQRGMTAVVRGSAAALPG+RWAQQPH QGHQQ ACGLSSNASQ+PADGA+GEGSKARRTEEQAKKVAEHKAAEMEYRLRMTALRKEVQREVKDKREADAVTAALERRRIAKRQAAARAERKRKAAISIALNEERKQQLKENYEAGYRESARVFFEREERKKNIHAILLEELEAESEHWINTPEDVTAKITDDLWE PGNNTAKGQISMPDEHLWRFSADVGLYNQEE+PSERDPYLRSRMYSRMQEMHTAGTYARERRTRWDNDTRGLLKEADRLLRKKRPGPPGYMSRLESS KATQWKPMEAQFGDE
Sbjct:    1 MYHRVLVAGRVGSVVAGRHGVIAGGPVHHTQRGMTAVVRGSAAALPGKRWAQQPHYQGHQQ-ACGLSSNASQKPADGAEGEGSKARRTEEQAKKVAEHKAAEMEYRLRMTALRKEVQREVKDKREADAVTAALERRRIAKRQAAARAERKRKAAISIALNEERKQQLKENYEAGYRESARVFFEREERKKNIHAILLEELEAESEHWINTPEDVTAKITDDLWEAPGNNTAKGQISMPDEHLWRFSADVGLYNQEEDPSERDPYLRSRMYSRMQEMHTAGTYARERRTRWDNDTRGLLKEADRLLRKKRPGPPGYMSRLESSGKATQWKPMEAQFGDE 337
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig101.814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMZ3_ECTSI2.360e-21897.63Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig101contigEcto-sp6_S_contig101:495139..500900 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1785
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-16_001170.1
Cds size1017
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig101.814.1prot_Ecto-sp6_S_contig101.814.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig101 495139..500132 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348734.149411-CDS-Ecto-sp6_S_contig101:495138..4953211682348734.149411-CDS-Ecto-sp6_S_contig101:495138..495321Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 495139..495321 +
1682348734.1570776-CDS-Ecto-sp6_S_contig101:495933..4961071682348734.1570776-CDS-Ecto-sp6_S_contig101:495933..496107Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 495934..496107 +
1682348734.1642659-CDS-Ecto-sp6_S_contig101:497613..4977601682348734.1642659-CDS-Ecto-sp6_S_contig101:497613..497760Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 497614..497760 +
1682348734.1742134-CDS-Ecto-sp6_S_contig101:498282..4983451682348734.1742134-CDS-Ecto-sp6_S_contig101:498282..498345Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 498283..498345 +
1682348734.1815436-CDS-Ecto-sp6_S_contig101:498693..4988971682348734.1815436-CDS-Ecto-sp6_S_contig101:498693..498897Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 498694..498897 +
1682348734.1901135-CDS-Ecto-sp6_S_contig101:499886..5001321682348734.1901135-CDS-Ecto-sp6_S_contig101:499886..500132Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 499887..500132 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348734.1974113-UTR-Ecto-sp6_S_contig101:500132..5009001682348734.1974113-UTR-Ecto-sp6_S_contig101:500132..500900Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig101 500133..500900 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig101.814.1

>prot_Ecto-sp6_S_contig101.814.1 ID=prot_Ecto-sp6_S_contig101.814.1|Name=mRNA_Ecto-sp6_S_contig101.814.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=339bp
MYHRVLVAGRVGSVVAGRHGVIAGGPVHHTQRGMTAVVRGSAAALPGRRW
AQQPHCQGHQQQACGLSSNASQRPADGADGEGSKARRTEEQAKKVAEHKA
AEMEYRLRMTALRKEVQREVKDKREADAVTAALERRRIAKRQAAARAERK
RKAAISIALNEERKQQLKENYEAGYRESARVFFEREERKKNIHAILLEEL
EAESEHWINTPEDVTAKITDDLWEVPGNNTAKGQISMPDEHLWRFSADVG
LYNQEEEPSERDPYLRSRMYSRMQEMHTAGTYARERRTRWDNDTRGLLKE
ADRLLRKKRPGPPGYMSRLESSRKATQWKPMEAQFGDE*
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mRNA from alignment at Ecto-sp6_S_contig101:495139..500900+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig101.814.1 ID=mRNA_Ecto-sp6_S_contig101.814.1|Name=mRNA_Ecto-sp6_S_contig101.814.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=5762bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:495139..500900+ (Ectocarpus species6 EcLAC_371)
ATGTACCATCGCGTGTTAGTGGCGGGAAGAGTCGGGTCGGTTGTAGCAGG
GAGGCATGGCGTGATTGCAGGTGGCCCCGTGCATCACACACAACGCGGCA
TGACCGCCGTTGTCCGAGGTTCGGCAGCAGCTTTGCCGGGGAGGCGATGG
GCACAGCAGCCGCACTGCCAGGGACACCAGCAGGTACAAAGCGGTTGTCG
GGGTGTTTCGTACACCCTGGTGGCGGTTTCGGGCAGAGGGGACGACTTTT
GTTTCGATTTGTTGGGTGACAGCGTCGAACCTACGGCGGTGGTTGCATGT
GATGGTACAATGAGCGCTCTGCTTGGCAGCAGGGAGAAGGACTGCTGAAC
TATCCACTGCTGTACTGCCTTGAGCAATGTAGAGAGAGCCATATGGAATC
ACGCGCGCAAGTTTTGCAAGATCAGATGGGGCTAGTTGTATTATTTACAC
CTTTACGGTTGGTCCAGAGGTGCATATGTTGTTGTGTAGTATTTTGACTT
GGTCACTTGTGCGTCTTGCGCTATCCGGTGTGCGTCTGGATGCATGTTTC
GCGCCAATCGACAAGGCCGGGCTTATTGCGCCCCATCTACTGCTGTAGAT
ACCTCCCCTGTTGAATATCCTACATGCTTGAGGCTAGCAATGCCTGCAGC
ACTCGATAAATCGCGGATAGCTGCTCCATCTCTGTCGCCACACCTTGTCA
ACTACCAGCTTCGTGATCTCCAGTCTGTCTGCCTGCTCGTCCGCCGCTCT
GTCGACATGCGAACCATCTCGCCTCCTCTCGCCGCAATTGAATAGCAGGC
GTGCGGCCTGTCGAGCAACGCTTCTCAGAGGCCTGCGGACGGCGCCGACG
GAGAGGGTTCCAAGGCGAGGCGCACGGAGGAGCAGGCAAAGAAGGTGGCG
GAGCACAAGGCCGCGGAGATGGAGTACAGGCTCAGGATGACGGCCCTGAG
GAAGGAGGTCCAGCGGGAGGTATGCATAGGCCGCCCCCGTTATGTGTCCT
GCGTCTGCTGTAGCAGTGGCTTGGACTACCTCATTGTAGGAGGATTGGTA
GGTGGTGCCCACGGGATCGATTACTACATGCCCCCTGTGCATAGCGTCGA
TAGCTGTAAAAGAAGGGCGTCCCCGGCGTTAACGGGATGGTGCAGGGAGC
TTAGCAAGTTGGGCATGTATATTGGGACTACAGATGAATGCAAGATTCGG
AACGAAATATGGAGGAAGGCGTCAGCCCTGGAAATATGTTGATATACGCA
CACAGCTGATAATTCTCTTTTCTCCCTACCTTGATTACGAGAAAACACCA
AGGAAAAGTCAATTTTCGAGATGCCAGGTACGCGAGCGAACCCATCCCCC
GCGCCGGCGCCGGCACCCGCCGCACCGGCGGTGTCGGCGCCCAGCGCGGG
GGGATCGGGCCGCCCTCTCCCGTTGCGTGCGTCGGCACGCTTCCTGTCCG
CCTGCACTCCACGCACCCAGTTACCGTGCTATACTACGACTGGGGCATTG
GGGGCCGATCCATCGCTCGACCTTAAGCGGGTTATATGGCCGAACGCCAC
CACAGCTGACGCGGGGGACCGTGCCTTCGCCGTCTACATGGCAACACCGA
TACATTGTAGCCACGAAGCTAGCCCCCGCGCCTGGCTCCAGGAAGTTTGT
GGAGGTGCTACGCGAGGCGGAGAAAGTGGAGCAGTCTCTGTTTGGGGGGT
CTCCGAGGTTCCGGCAGAATGCAGCGATCAATCGGACTGCTCCACTTTCT
CCGCCTCGCGTAGCACCTCCACAAACTTCCTGGAGCAAGGCGCGGGGGCT
AGCTTCGTGGCTACAATGTATCGGTGTCGCCATGTAGACGGCGAAGGCAC
GGTCCCCCGCGTCAGCTGTGGTGCCGTTCGGCCATATAACCCGCTTAAGG
TCGAGCGATGGATCGGCCCCCAATGCCCCAGCCGTAGTATAGCACGGTAA
CTGGGTGCGTGGAGTGCAGGCGGACACGAAGCGTGCCGACGCACGCAACC
TGCGGCAGTGCATCCGTAAGACCGCCAGCCTTCGAGCTAGAGGCCTCATC
CAAAATCCAATACTTTCATTAAATGATCCTAGGCTAAGAGCAAAATACAA
CAGAGTTCTCGATGCCACTGCTGCTGTTGACAGAGACTTGTCTACACTGC
TGTGCAGGGGGTCCGAACCGGGAGGCGTGCACTCGGCCTCACACTGACAG
ATGTGGCATTTGTTGTCCTGTTTACTGTGATTTTAAAGAAGGCGAATTAC
TGCAGACTCCCAGGTCGAAAATACGCCTTCGTCGCCCAAGTCTAAAAAAA
GGTACTTCAATCATTTTTTGCTTCGACATCCCCCGCCCGTACTACCCTGA
CTCCGTGTCCTGGGCTCGTGCAAGCGCAGCCAAGCAAGACCCACCTCACC
ACCACTCCTTCCCAGTAATGCTGTCCGTTCTGCTGACACCAGTCTAAATA
TTGTTGCTAATTTTCACCATGACAGGTGAAGGACAAGCGAGAAGCCGACG
CAGTGACCGCTGCCCTGGAGCGCCGCCGTATCGCCAAGAGGCAGGCCGCC
GCTCGCGCCGAGCGAAAGAGGAAGGCCGCCATCAGCATCGCTTTGAACGA
AGAGAGGAAGCAACAGCTCAAGGTGTGTACGTACATACATGGCATGCCTA
GATAATTGTGTAGAGGTGTAGGACCTCTCGAAGGTAGCTCGAAGATAGCT
CTGGAAGGAAGATTGCTCTAGAAGGTACGGCTGGATGGTTGTTCAGAGGT
GCAGCGGTACCTCTAGAAGGTAGTCTGCCGGGTTCACCAGACCCTTCGAC
TCGTGCCCCAATCTAGCGAATTGGTCGAGGCTGCCCACCGCCGGCCCGAA
GTACTGTGTGCGCACCTCAAGTACCGTTTGTGTGTGTGTTATTGCGCTGT
TCACGCCGCTGTGCTTTGTCCCAACCCATGGCACAGCGGTTACTTTTCCC
AGTCCCCTCCTCTGGCCCGCAGGATCCTCCAAGAGTGGTGTGGCACCTGA
AGTGTACCTCATTACTCCGAGCTTGTCCCCACGCTCCGGTGTTGGTGTAG
CGAACGATGTTCTTGTTGCGTTTCACCGCTCATGACACCTCCCCCCCTAC
CACGCCAACCCATGACCGATTGCCGCCGCCGCACACCCGTACAGGAAAAC
TATGAGGCTGGATACAGGGAGAGTGCTCGAGTATTTTTCGAGCGGGAAGA
ACGCAAGGTGTGAAGATACGTGATATGATCCGTTGTGGGGGAAATAAACC
CGCAAGCCTCTGGTACGCAAGGCTGTCGGACGGACAAGTGGTTTTATTCT
TCTTGGAGGTCTCACCACGCCGATTTTGTGTTTGTCTCCTGCTTTTTGCT
GGAGGGTCCGTGCTCCGTGAGCATGTGCTTGGTGTTGAGCGATTCGTGTG
GGGGAAGGTTTTCCGGTACGTTTTTGCTCGTCCTGGCGGCTGAATCGTAT
GAAGATGCGGTTCCCGCTCTCGAGCTCGAGTTCGCCCTTGTCACCACCCC
CGGTTGCCACCCAAACTCCATCGTGCTGCGTGGGTCCCCCCGTTCCCTTC
ACCAGAAAAACATTCACGCGATCCTGTTGGAGGAGCTGGAGGCCGAGAGC
GAGCACTGGATCAACACGCCAGAAGACGTGACCGCCAAGATCACCGACGA
CCTCTGGGAGGTGCCGGGGAACAACACGGCGAAGGGACAGATCAGCATGC
CGGACGAGCACCTCTGGCGGTTCTCCGCGGACGTGGGGCTCTACAACCAG
GAGGAGGAGGTGAGTGCCTTGTTGCCGCTCTTGGCACAGACTGCTCCCCA
ATTTCGTGTATTATTTCTACGTGCTTTGTTTGTTACACCGCTGGTCTTAC
ACCAACCTTGGTCTACCGACCGAGATATGAGCCCATCAGGACGAACAATA
CGATCTTGTGGTGGTTGCATCTTCTCCTCTGGTTTTCGTGTGTCGCTGTG
AGGGCAATGGAGTTAACCCTACCCTTGACCGGTTCAGACAGGCAACGCTG
ACGATACTCGTCGAGCTGCGATCACAATGCTCTAGATCTCAAGGACACGT
TTCCTACGACAGATTGAGCTACACCCTTTGGACAAGTATGCGCCAACCCG
CAGGATACATCTTCGCAAGACCCTGATTTCGAAGTAGTCGAACAACAACG
TCGTGTTCTTGTTGCTACGCCCAGTCGGTATCTCACGCGCTGTCTCTTGC
CCTGTGCTAAAAATATGCAGATGAATACAATTCAAACACACAGCAACGAA
GCGATGCACATAAAACAATGCTTGGGCGCAGCCCACAACATGCAACCCTA
CCCACCTGCTGCCAGCTGCTGGAATGTTGTATTACCGCTGGAATCAGCTA
TGGCACTGATGTTTCAACCGAGGACCTTCTGCACTAGTGCACCCCGATAT
GTTCACAAGAACGAAACAGGGAAAGTCGAGTTTTGTTTTGTCACAGACGG
CGGAAGCCTGCTCAAACTTGAAATCTCACAAGATTCGCGCTTCGCGCCTT
GGCTCGACATCGGCATTTGACACCCGGTCGCCCAAAGGGCACGGAAATCA
GAATGAGAGTTTTACGTGTATCGAAAGCGATGAGAGTTTGAAACGGCGAG
GCCGCAATGCAGCACGGTTTTGCCCTTTGGAAGCGGGAAACTCAGTTGGA
AGCCCTAACCCTTCCGGTTCCTGTCTCTCTATTCCTCTCTCCGTGACGTG
CGAACGACCCCCCCTCCCTCCCCTTCCCACTGCCGTCGGGCCCCGCAGCC
GTCGGAGCGCGACCCCTACCTCCGGTCCCGGATGTACTCCCGCATGCAAG
AGATGCACACGGCGGGGACGTACGCGAGAGAGCGCCGCACCCGCTGGGAC
AACGACACGAGGGGTCTCCTCAAGGAGGCAGACCGACTCCTCCGAAAGAA
GCGGCCGGGGCCGCCGGGGTACATGTCTCGGCTGGAGTCTTCGCGCAAGG
CGACCCAGTGGAAACCCATGGAGGCGCAATTTGGCGACGAGTGACCCACC
CACTCCCGGCGGGCGGGCGGGCGGAGCAAGGGGCGTCGGCCAGTATGGAG
AGGCCGGCGCTCGGTGTGGTGGCGTTCTTTTGAGGGTCGGCCGTTGTGTA
GACGCAAATGCCGTGGTTTGGCAAGACGGGGTTGGGTGGTGTCTTCTAGC
GCATGCTCGTGCAACGGTATTATTAGCCTCTGTTGGTGGTTGTTCAGTCT
TGGTGGGCCATCAGTAGAGCGGCTCAACTCACTCCGGCCACCCCTTGCGC
GTCTTTCTGTCGCTATAACTGCGACCGAGACGGAGCAGGGGTGCCTGGTT
GCGTTGGACCGAAACAGACCTCGTATGGGTCCGGTATCTTTGCTGCGTCG
CATGTTTTACGTGAGGAATGTTAGCTCGTGATAGCAGCAGAGTGGACGGA
GGAACCCTTTTTCTGTTTGTGTTTCATACGAACGGGAATGTTTTTTGGGC
AGCCATAGCCGACGGGTCCCGGGGCAACTGGCCATGAGTGTGTCGATTTT
CACGCCTTGAGCTCAAAATCAAACTTTCCACTTGAGTCATCTCCCTCTGT
AGGACATCAAGTACCCTTTTTCGCGGGAGGCTTACCGGTGAGATGGCTCG
ATACCACGTAAGTCTTTGATATTCGATGTGAAAACCGTGTTCGAACTGCA
GCTAGCTCTGTTTGGGCGTTGCTTGTGAAAACGAGTCTGGCCTCGCGGAG
TATGAGGTATTCTTCTTGCCTGCTGTACAAAGGGCAATAGGTTTTGGCCA
AAAACTTCAGGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig101:495139..500900+

>mRNA_Ecto-sp6_S_contig101.814.1 ID=mRNA_Ecto-sp6_S_contig101.814.1|Name=mRNA_Ecto-sp6_S_contig101.814.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1017bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:495139..500900+ (Ectocarpus species6 EcLAC_371)
ATGTACCATCGCGTGTTAGTGGCGGGAAGAGTCGGGTCGGTTGTAGCAGG
GAGGCATGGCGTGATTGCAGGTGGCCCCGTGCATCACACACAACGCGGCA
TGACCGCCGTTGTCCGAGGTTCGGCAGCAGCTTTGCCGGGGAGGCGATGG
GCACAGCAGCCGCACTGCCAGGGACACCAGCAGCAGGCGTGCGGCCTGTC
GAGCAACGCTTCTCAGAGGCCTGCGGACGGCGCCGACGGAGAGGGTTCCA
AGGCGAGGCGCACGGAGGAGCAGGCAAAGAAGGTGGCGGAGCACAAGGCC
GCGGAGATGGAGTACAGGCTCAGGATGACGGCCCTGAGGAAGGAGGTCCA
GCGGGAGGTGAAGGACAAGCGAGAAGCCGACGCAGTGACCGCTGCCCTGG
AGCGCCGCCGTATCGCCAAGAGGCAGGCCGCCGCTCGCGCCGAGCGAAAG
AGGAAGGCCGCCATCAGCATCGCTTTGAACGAAGAGAGGAAGCAACAGCT
CAAGGAAAACTATGAGGCTGGATACAGGGAGAGTGCTCGAGTATTTTTCG
AGCGGGAAGAACGCAAGAAAAACATTCACGCGATCCTGTTGGAGGAGCTG
GAGGCCGAGAGCGAGCACTGGATCAACACGCCAGAAGACGTGACCGCCAA
GATCACCGACGACCTCTGGGAGGTGCCGGGGAACAACACGGCGAAGGGAC
AGATCAGCATGCCGGACGAGCACCTCTGGCGGTTCTCCGCGGACGTGGGG
CTCTACAACCAGGAGGAGGAGCCGTCGGAGCGCGACCCCTACCTCCGGTC
CCGGATGTACTCCCGCATGCAAGAGATGCACACGGCGGGGACGTACGCGA
GAGAGCGCCGCACCCGCTGGGACAACGACACGAGGGGTCTCCTCAAGGAG
GCAGACCGACTCCTCCGAAAGAAGCGGCCGGGGCCGCCGGGGTACATGTC
TCGGCTGGAGTCTTCGCGCAAGGCGACCCAGTGGAAACCCATGGAGGCGC
AATTTGGCGACGAGTGA
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