mRNA_Ecto-sp6_S_contig101.802.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig101.802.1
Unique NamemRNA_Ecto-sp6_S_contig101.802.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig101.802.1 vs. uniprot
Match: D7FPN5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPN5_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 3.400e-47
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1
Query:    1 MLFGFNLLWKLFKAGLLATNAVTILHKQRFLRKYRLDEVDHSPSASAMKNQVVGLIAAVAYLRGPLIVLNSLTCVIAMLP 240
            MLFGFNLLWKLFKAGLLATNAVTILHKQRFLRKYRLDEVDHSPSASAMKNQVVGLIAAVAYLRGPLIVLNSLTCVIAMLP
Sbjct:    1 MLFGFNLLWKLFKAGLLATNAVTILHKQRFLRKYRLDEVDHSPSASAMKNQVVGLIAAVAYLRGPLIVLNSLTCVIAMLP 80          
BLAST of mRNA_Ecto-sp6_S_contig101.802.1 vs. uniprot
Match: A0A835YX81_9STRA (Yos1-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX81_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 6.350e-20
Identity = 45/72 (62.50%), Postives = 51/72 (70.83%), Query Frame = 1
Query:   22 LWKLFKAGLLATNAVTILHKQRFLRKYRLDEVDHSPSASAMKNQVVGLIAAVAYLRGPLIVLNSLTCVIAML 237
            LW LFK GLL TNAV ILHK+RFLR     E D +  +S +KNQ +GLI AVAYLRGPLI +N LTC   ML
Sbjct:    4 LWSLFKTGLLVTNAVAILHKERFLRPLGWAEPDPALGSSNLKNQAIGLINAVAYLRGPLIAINLLTCTFEML 75          
BLAST of mRNA_Ecto-sp6_S_contig101.802.1 vs. uniprot
Match: K8ZAA6_NANGC (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8ZAA6_NANGC)

HSP 1 Score: 73.6 bits (179), Expect = 1.640e-15
Identity = 39/72 (54.17%), Postives = 54/72 (75.00%), Query Frame = 1
Query:   22 LWKLFKAGLLATNAVTILHKQRFLRKYRLDEVDHSPSASAMKNQVVGLIAAVAYLRGPLIVLNSLTCVIAML 237
            +W L+K+GLL TN V +LH++RFLRKY LD  + + + S ++NQVVGL+ AV YL+ PLI LN +T VI +L
Sbjct:    5 IWSLYKSGLLFTNGVAVLHRKRFLRKYGLDVAEVADTTS-IRNQVVGLLNAVQYLKVPLIALNIVTVVIELL 75          
BLAST of mRNA_Ecto-sp6_S_contig101.802.1 vs. uniprot
Match: A0A2D4BY06_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BY06_PYTIN)

HSP 1 Score: 68.9 bits (167), Expect = 1.040e-13
Identity = 37/67 (55.22%), Postives = 49/67 (73.13%), Query Frame = 1
Query:   16 NLLWKLFKAGLLATNAVTILHKQRFLRKYRLDEVDHSPSASAMKNQVVGLIAAVAYLRGPLIVLNSL 216
             +LW  F + LL TNAV ILH++RFLRKY  D+VD S   + ++NQ+VG + AV YLR PLIV+N+L
Sbjct:    2 GVLWGFFLSSLLLTNAVCILHEKRFLRKYGWDKVDPSQGMT-IRNQIVGFLVAVQYLRVPLIVVNAL 67          
BLAST of mRNA_Ecto-sp6_S_contig101.802.1 vs. uniprot
Match: A0A067C849_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C849_SAPPC)

HSP 1 Score: 68.6 bits (166), Expect = 1.560e-13
Identity = 35/73 (47.95%), Postives = 52/73 (71.23%), Query Frame = 1
Query:   22 LWKLFKAGLLATNAVTILHKQRFLRKYRLDEVDHSPSAS-AMKNQVVGLIAAVAYLRGPLIVLNSLTCVIAML 237
            +WKL  + LL+ NA+ ILH++RFLR+Y  D+++ S   S +MKNQVVG + AV YLR PL+V+N +   + +L
Sbjct:    4 IWKLIMSSLLSVNALAILHEKRFLRRYGYDQLEASSGGSPSMKNQVVGFLVAVQYLRMPLVVINIVAIFLELL 76          
BLAST of mRNA_Ecto-sp6_S_contig101.802.1 vs. uniprot
Match: A0A8K1FQA8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FQA8_PYTOL)

HSP 1 Score: 67.0 bits (162), Expect = 6.000e-13
Identity = 35/66 (53.03%), Postives = 47/66 (71.21%), Query Frame = 1
Query:   16 NLLWKLFKAGLLATNAVTILHKQRFLRKYRLDEVDHSPSASAMKNQVVGLIAAVAYLRGPLIVLNS 213
             +LW  F + LL TNAV ILH++RFLR Y  D++D S   + +KNQVVG + AV YLR PLI++N+
Sbjct:    2 GVLWDFFLSSLLLTNAVCILHEKRFLRPYGWDKIDSSQGMT-IKNQVVGFLVAVQYLRVPLIIVNA 66          
BLAST of mRNA_Ecto-sp6_S_contig101.802.1 vs. uniprot
Match: A0A3F2RI45_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RI45_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.710e-12
Identity = 35/67 (52.24%), Postives = 47/67 (70.15%), Query Frame = 1
Query:   16 NLLWKLFKAGLLATNAVTILHKQRFLRKYRLDEVDHSPSASAMKNQVVGLIAAVAYLRGPLIVLNSL 216
             +LW  F   LL TNAV ILH++RFLR +  D+VD S   + +KNQ+VG + AV YLR PL+V+N+L
Sbjct:    2 GVLWNFFLTSLLLTNAVCILHEKRFLRSHGWDKVDSSQGMT-IKNQIVGFLIAVQYLRFPLMVINTL 67          
BLAST of mRNA_Ecto-sp6_S_contig101.802.1 vs. uniprot
Match: K3WSH3_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WSH3_GLOUD)

HSP 1 Score: 60.5 bits (145), Expect = 2.290e-10
Identity = 34/73 (46.58%), Postives = 47/73 (64.38%), Query Frame = 1
Query:   16 NLLWKLFKAGLLATNAVTILHKQRFLRKYRLDEVDHSPSASAMKNQVVGLIAAVAYLRGPLIVLNSLTCVIAM 234
             +LW      LL TNAV ILH++RFL+ Y   +V+ S   + +KNQVVG + AV YLR PLIV+N+   V+ +
Sbjct:    2 GVLWNFVLTSLLLTNAVCILHEKRFLKPYGWHKVEASEGMT-IKNQVVGFLVAVQYLRVPLIVINAFMIVLEL 73          
BLAST of mRNA_Ecto-sp6_S_contig101.802.1 vs. uniprot
Match: A0A0P1A8P8_PLAHL (Immediate early response 3-interacting protein 1-like n=12 Tax=Peronosporaceae TaxID=4777 RepID=A0A0P1A8P8_PLAHL)

HSP 1 Score: 60.1 bits (144), Expect = 3.250e-10
Identity = 32/67 (47.76%), Postives = 45/67 (67.16%), Query Frame = 1
Query:   16 NLLWKLFKAGLLATNAVTILHKQRFLRKYRLDEVDHSPSASAMKNQVVGLIAAVAYLRGPLIVLNSL 216
             +LW      LL TNAV ILH++RFLR +   +VD S   + +KNQ+VG + AV YLR PL+++N+L
Sbjct:    2 GVLWNFVLTSLLLTNAVCILHEKRFLRSHGWHKVDSSQGMT-IKNQIVGFLIAVQYLRFPLMIINTL 67          
BLAST of mRNA_Ecto-sp6_S_contig101.802.1 vs. uniprot
Match: G4ZTT8_PHYSP (AP-3 complex subunit delta n=21 Tax=Phytophthora TaxID=4783 RepID=G4ZTT8_PHYSP)

HSP 1 Score: 60.8 bits (146), Expect = 5.900e-9
Identity = 33/74 (44.59%), Postives = 49/74 (66.22%), Query Frame = 1
Query:   16 NLLWKLFKAGLLATNAVTILHKQRFLRKYRLDEVDHSPSASAMKNQVVGLIAAVAYLRGPLIVLNSLTCVIAML 237
             +LW      LL TNAV ILH++RFLR +   +VD S   + +KNQ+VG + AV YLR PL+++N+L  ++ +L
Sbjct:    2 GVLWNFVLTSLLLTNAVCILHEKRFLRPHGWHKVDSSQGMT-IKNQIVGFLIAVQYLRFPLMIINTLMILLELL 74          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig101.802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7FPN5_ECTSI3.400e-47100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YX81_9STRA6.350e-2062.50Yos1-like protein n=1 Tax=Tribonema minus TaxID=30... [more]
K8ZAA6_NANGC1.640e-1554.17Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A2D4BY06_PYTIN1.040e-1355.22Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A067C849_SAPPC1.560e-1347.95Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]
A0A8K1FQA8_PYTOL6.000e-1353.03Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3F2RI45_9STRA1.710e-1252.24Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
K3WSH3_GLOUD2.290e-1046.58Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4... [more]
A0A0P1A8P8_PLAHL3.250e-1047.76Immediate early response 3-interacting protein 1-l... [more]
G4ZTT8_PHYSP5.900e-944.59AP-3 complex subunit delta n=21 Tax=Phytophthora T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig101contigEcto-sp6_S_contig101:339601..340862 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score68.6
Seed ortholog evalue1.6e-09
Seed eggNOG ortholog112098.XP_008608353.1
Model size243
Hectar predicted targeting categorysignal peptide
Exons2
EggNOG free text desc.Yos1-like
EggNOG OGs2E2PC@1,2S9WB@2759
Ec32 ortholog descriptionYos1-like
Ec32 orthologEc-16_001310.1
Cds size243
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348732.723389-CDS-Ecto-sp6_S_contig101:339600..3397001682348732.723389-CDS-Ecto-sp6_S_contig101:339600..339700Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 339601..339700 +
1682348732.7337487-CDS-Ecto-sp6_S_contig101:340719..3408621682348732.7337487-CDS-Ecto-sp6_S_contig101:340719..340862Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 340720..340862 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig101.802.1prot_Ecto-sp6_S_contig101.802.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig101 339601..340862 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig101.802.1

>prot_Ecto-sp6_S_contig101.802.1 ID=prot_Ecto-sp6_S_contig101.802.1|Name=mRNA_Ecto-sp6_S_contig101.802.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=81bp
MLFGFNLLWKLFKAGLLATNAVTILHKQRFLRKYRLDEVDHSPSASAMKN
QVVGLIAAVAYLRGPLIVLNSLTCVIAMLP*
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mRNA from alignment at Ecto-sp6_S_contig101:339601..340862+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig101.802.1 ID=mRNA_Ecto-sp6_S_contig101.802.1|Name=mRNA_Ecto-sp6_S_contig101.802.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1262bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:339601..340862+ (Ectocarpus species6 EcLAC_371)
ATGTTGTTTGGCTTTAACCTGCTGTGGAAGCTCTTCAAGGCTGGGCTGCT GGCCACCAATGCCGTCACAATTCTCCACAAGCAGCGCTTCTTGAGAAAAT GTAAGCGAGGCAGGTTACTCCGCGTCTCTCCCGCTGTGTTGCGTATGGAA CGATGGAATCAGTGGGGCGTGTGCAGTCCACACAGAGCTAACTCAACAAA GCACGACTTTGCGATAACTAGAGAGAAAGGAACCCACCTCCCCGATAGGA AGCAGGCTACACCATCCTAAAATAGCCTGATGGGCACGGAAGGCCAGTGG ACGTCGAACACGGCCGCGGATGCAACAACTGCATCTCGAAGTCGCTTGTA CAACGACGATACAGCAGTACTGCTGCTATCGATACAGCAGTACTGCTGCT ATGTGTAGAGGTCGACGGGACGATGTCTCTTTTTTGCTTTGAGCACCGTG CTGAGCTCTCTGACCTGCATCTTTTCAGATTCTATGATGTTGTCGTCTTC TATCATGATCGATTTTGGACAAATTGGACTTGGAAACCTGAGCTGCCGCA CAGCAGGGAGGTAATTATTGTGTAGTTTAGACGGCGTCCTCTTGGACAAT CAACCCGCTAAAGCTACAGCAGTATCTAGGAGACTTATGTACGTCGAGAC CGGGTTGGTGAGAAACGCGCAGCACGCTGGCCTACATGGCGAGCTACCCA TTTGAACCGCGCCACCAGTTACCCTGTTGGAACGTTGGAACCCGCAACAC CGAGAGTTTCACCTGTGTCTGCTCCCGCAGCTTCTCGCTGCTCCCTCGCG CAAGCCCTTGAGCGTCCGCACCCCCCCACCCCCCCGGGGGCACTCTCCCT CACCCTTCATATTTTGCCTCGTTTGCATAGCCTTAACAAGCAGCAAGAGA CACGTTTCTCTCCTCTTTCTCATCGTTTTTGACGCCCATGTGCGTACGGT TGCACCTCGCCAATAGTTTGTAGTCTATCCCCCCACCAGCGCAATAACCT TAGCGAGGATATTTCACTTGGTTATAGTATGGGTTACGGGGTTGTGTGAG GGCTACAGTAGGTCAGTCCTTCGCCCGACCGACACGAACCCCCCGCGCTC AACGAACGTGACCTCGCAGATCGGCTCGACGAGGTGGACCACTCGCCATC GGCCTCGGCGATGAAGAACCAGGTCGTGGGCTTGATCGCGGCGGTGGCGT ATCTCCGCGGCCCGCTGATCGTCCTCAACTCACTCACCTGCGTCATCGCG ATGCTCCCATGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig101:339601..340862+

>mRNA_Ecto-sp6_S_contig101.802.1 ID=mRNA_Ecto-sp6_S_contig101.802.1|Name=mRNA_Ecto-sp6_S_contig101.802.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=243bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:339601..340862+ (Ectocarpus species6 EcLAC_371)
ATGTTGTTTGGCTTTAACCTGCTGTGGAAGCTCTTCAAGGCTGGGCTGCT
GGCCACCAATGCCGTCACAATTCTCCACAAGCAGCGCTTCTTGAGAAAAT
ATCGGCTCGACGAGGTGGACCACTCGCCATCGGCCTCGGCGATGAAGAAC
CAGGTCGTGGGCTTGATCGCGGCGGTGGCGTATCTCCGCGGCCCGCTGAT
CGTCCTCAACTCACTCACCTGCGTCATCGCGATGCTCCCATGA
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