mRNA_Ecto-sp6_S_contig101.798.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig101.798.1
Unique NamemRNA_Ecto-sp6_S_contig101.798.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig101.798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig101contigEcto-sp6_S_contig101:294183..295730 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size744
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_001350.1
Cds size744
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348732.0463822-CDS-Ecto-sp6_S_contig101:294182..2942811682348732.0463822-CDS-Ecto-sp6_S_contig101:294182..294281Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 294183..294281 -
1682348732.0568259-CDS-Ecto-sp6_S_contig101:294809..2953131682348732.0568259-CDS-Ecto-sp6_S_contig101:294809..295313Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 294810..295313 -
1682348732.0654385-CDS-Ecto-sp6_S_contig101:295589..2957301682348732.0654385-CDS-Ecto-sp6_S_contig101:295589..295730Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 295590..295730 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig101.798.1prot_Ecto-sp6_S_contig101.798.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig101 294183..295730 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig101.798.1

>prot_Ecto-sp6_S_contig101.798.1 ID=prot_Ecto-sp6_S_contig101.798.1|Name=mRNA_Ecto-sp6_S_contig101.798.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=248bp
MALDRFLYHEIEPAAQRIFDAAVLDHAEACRLLDEKPVQAFAGGGGGRVG
VIQPPPPSSSTSVHARLPVKGRQGAVAGGAFDRPRIIDFTGGGGGGGGGG
SYSARSKIVPGRRRLLVEDNSRKKGFEEKEGGGGHRGGSSGSRGERAVAT
GSGGFAGDDVLAGAASCGRRERQIGGGGGGVTAAAAAAAAAAARRSDNLE
EEDDDVWDAPLPGRLRATDISAKIVGLSSEIRRRAAAEAGREGHRKQ*
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mRNA from alignment at Ecto-sp6_S_contig101:294183..295730-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig101.798.1 ID=mRNA_Ecto-sp6_S_contig101.798.1|Name=mRNA_Ecto-sp6_S_contig101.798.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1548bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:294183..295730- (Ectocarpus species6 EcLAC_371)
ATGGCCCTGGATCGCTTCCTGTACCACGAAATCGAGCCGGCCGCCCAACG
TATTTTCGACGCGGCCGTGTTGGATCACGCGGAAGCCTGCCGCCTCCTGG
ATGAAAAGCCCGTGCAGGCTTTCGCCGGCGGCGGCGGCGGCGTACAAACC
GCCTCCTCCAAACACCAGCAGGAGGGCCGGGGGGGTTCAAGAGGAGGGAG
CAAGCCGACCATCGTCAGTGGCAACAACGACATTCGGAGCGACCCCACAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGATGACGACGTC
GGCGTTGCGACGGGCAAAGCTTCAGGCACTGCACCTGCGACCGCAACAGC
GCCGGCGGGGGCAGTGTCGGGGGCGAGGGGTAATGCTAACCCTACCGAGC
CGCGGCAACGGGCAAAGAGGGTCGGGGTGATCCAGCCGCCGCCGCCGTCG
TCGTCGACCAGCGTGCACGCTAGGTTGCCGGTGAAAGGAAGGCAGGGCGC
CGTCGCCGGTGGTGCGTTCGATCGTCCTCGCATAATCGATTTCACCGGCG
GCGGCGGCGGCGGTGGTGGTGGCGGCAGTTACAGTGCCCGTTCGAAGATC
GTGCCCGGGAGGCGCCGCCTCCTCGTTGAAGACAACTCCAGGAAAAAGGG
GTTCGAGGAGAAGGAGGGGGGAGGGGGACACAGGGGTGGATCGAGCGGTT
CGCGAGGAGAGCGGGCGGTGGCTACGGGGTCTGGTGGCTTTGCCGGCGAC
GACGTCCTGGCGGGAGCGGCGTCATGTGGACGAAGGGAGAGGCAGATAGG
CGGTGGCGGCGGCGGTGTTACTGCTGCTGCTGCCGCTGCCGCTGCTGCCG
CTGCTAGGAGGAGTGACAACCTCGAAGAGGAAGACGATGACGTGTGGGAT
GCGCCGCTTCCTGGCAGGCTGGTGAGAAAAAAAACACGTTTTGGGGGAGT
TGGGCGTGCGGAAGGGGTCATGCCACGTTTCGCGTGTTTTTGGAAGTACT
ACGCCCCGACATGAATCAATCGAAACGGCTTGAGCACCGGCACGGATTCC
AGGCAGCAGCGGTACGTGTTACGACAGAAGGCCACCGGCAAACCGTTCTC
TTCCAAATAGAATAACATCAGTGTTTTCAAGTCAGTTATTGTTTACAACG
TGGGAGAAACCAGTGGTATCACCTCCCGCGGGTCGGTGTCGGCCACCCTC
CCGTACTCCTTCCTTTTGTCGGGGAGAAGCTCTTCTCTCTTATCCCTTGC
TGTTGTCGCAGTTGAGAACCCTCTTAAAAGACCATTCGAAGTCTCAAGTC
TCCCTGTTGTATGGCTGTATCCATCGGCCACTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTGTGTGTGTGTGTGTGTGTTCCCCCTACACTCGTTTTCATAGC
GTGCGACCGATATCAGCGCCAAGATCGTGGGACTGTCATCCGAGATCAGG
CGCCGGGCAGCAGCCGAGGCCGGAAGAGAAGGCCATCGCAAGCAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig101:294183..295730-

>mRNA_Ecto-sp6_S_contig101.798.1 ID=mRNA_Ecto-sp6_S_contig101.798.1|Name=mRNA_Ecto-sp6_S_contig101.798.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=744bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:294183..295730- (Ectocarpus species6 EcLAC_371)
ATGGCCCTGGATCGCTTCCTGTACCACGAAATCGAGCCGGCCGCCCAACG
TATTTTCGACGCGGCCGTGTTGGATCACGCGGAAGCCTGCCGCCTCCTGG
ATGAAAAGCCCGTGCAGGCTTTCGCCGGCGGCGGCGGCGGCAGGGTCGGG
GTGATCCAGCCGCCGCCGCCGTCGTCGTCGACCAGCGTGCACGCTAGGTT
GCCGGTGAAAGGAAGGCAGGGCGCCGTCGCCGGTGGTGCGTTCGATCGTC
CTCGCATAATCGATTTCACCGGCGGCGGCGGCGGCGGTGGTGGTGGCGGC
AGTTACAGTGCCCGTTCGAAGATCGTGCCCGGGAGGCGCCGCCTCCTCGT
TGAAGACAACTCCAGGAAAAAGGGGTTCGAGGAGAAGGAGGGGGGAGGGG
GACACAGGGGTGGATCGAGCGGTTCGCGAGGAGAGCGGGCGGTGGCTACG
GGGTCTGGTGGCTTTGCCGGCGACGACGTCCTGGCGGGAGCGGCGTCATG
TGGACGAAGGGAGAGGCAGATAGGCGGTGGCGGCGGCGGTGTTACTGCTG
CTGCTGCCGCTGCCGCTGCTGCCGCTGCTAGGAGGAGTGACAACCTCGAA
GAGGAAGACGATGACGTGTGGGATGCGCCGCTTCCTGGCAGGCTGCGTGC
GACCGATATCAGCGCCAAGATCGTGGGACTGTCATCCGAGATCAGGCGCC
GGGCAGCAGCCGAGGCCGGAAGAGAAGGCCATCGCAAGCAGTAG
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