mRNA_Ecto-sp6_S_contig101.796.1 (mRNA) Ectocarpus species6 EcLAC_371
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig101.796.1 vs. uniprot
Match: D7FPM9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPM9_ECTSI) HSP 1 Score: 507 bits (1306), Expect = 7.280e-169 Identity = 262/267 (98.13%), Postives = 264/267 (98.88%), Query Frame = 1 Query: 1 MVLRSLFLVALPISLNLGSAFLLPSVQQVVLPDTSTAIVRHQHDTGSRSMLSAAAPTAAGGSSSTATAKKSFLQNLERKRAGEEVASSALNADLHVLRSTPTQSSTTTVDNTRSWKGTWEICYAPHIQILAKVILTEFPSVLYNFVSDDGRMVSHSRYESKVFGSGWFNADGRVVVLPASGGGTNEAPRQTVQVIFERFWWDRSGEDRPTGEPPGSSATPVDGFVQAAGKAMFFDGLSVFPVHYLDDDFCVFEFKAAGTVVASQRIA 801
MVLRSLFLVALPISLNLGSAFLLPSVQQVVLPDTSTAI+RHQHDTGSRSMLSAAAPTAAGGSSSTATAKKSFL+NLERKRAGEEVASSALNADLHVL STPTQSSTTTVDNTRSWKGTWEICYAPHIQ LAKVILTEFPSVLYNFVSDDGRMVSHSRYESKVFGSGWFNADGRVVVLPAS GGTNEAPRQTVQVIFERFWWDRSGEDRPTGEPPGSSATPVDGFVQAAGKAMFFDGLSVFPVHYLDDDFCVFEFKAAGTVVASQRIA
Sbjct: 1 MVLRSLFLVALPISLNLGSAFLLPSVQQVVLPDTSTAIIRHQHDTGSRSMLSAAAPTAAGGSSSTATAKKSFLRNLERKRAGEEVASSALNADLHVLGSTPTQSSTTTVDNTRSWKGTWEICYAPHIQTLAKVILTEFPSVLYNFVSDDGRMVSHSRYESKVFGSGWFNADGRVVVLPASEGGTNEAPRQTVQVIFERFWWDRSGEDRPTGEPPGSSATPVDGFVQAAGKAMFFDGLSVFPVHYLDDDFCVFEFKAAGTVVASQRIA 267
BLAST of mRNA_Ecto-sp6_S_contig101.796.1 vs. uniprot
Match: D7FPM8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPM8_ECTSI) HSP 1 Score: 357 bits (916), Expect = 6.780e-112 Identity = 216/328 (65.85%), Postives = 218/328 (66.46%), Query Frame = -2 Query: 2445 AAAAAPPRRLSRASPHVWQRGFASRSLPSLLAPSNDGRLLGPGGRRRPPPICRTPRAPDRPWPEVRRSVSSASPPLXXXXXXXXXXXXXTAAVARAMSSYEWKNMSAQAQKANKEFGELSREEIRKAGEEEVDKVEKALKAMEPFNDVSQVRREGLEVFAELGPEVGTYWIKFDLSIYQICLMSPRSGPHRYIFDKGSG*APGLGTERERDIRAGVLGLFASLVRAVVGWCCCHRRR*RCAPPQNAFDHGLCRPSLPARFLYVTRPT*TSLMRCFCRHHSSLSCSNSSSSASLNCRNRRRWIGEADKHDFQGMLTGDIIQSACGIPDF 3428
AAAAAPPRRLSRASPH WQRGFASRSLPSLLAPS+DG LLGPGGRRRPPP CRTPRAPDRPWPEVRRSVSSAS XXXXXXXXXXXXX AVARAMSSYEWKNMSAQAQKANKEFGELSREEIRKAGEEEVDKVEKALKAMEPFNDV +VRREGLEVFAELGPEVGTYWIKFDLSIYQICLMSPRSGPHRYIFDKGSG RWIGEADKHDFQGMLT DIIQSACGIPDF
Sbjct: 8 AAAAAPPRRLSRASPHAWQRGFASRSLPSLLAPSDDGPLLGPGGRRRPPPFCRTPRAPDRPWPEVRRSVSSASXXXXXXXXXXXXXXXXXXAVARAMSSYEWKNMSAQAQKANKEFGELSREEIRKAGEEEVDKVEKALKAMEPFNDVFEVRREGLEVFAELGPEVGTYWIKFDLSIYQICLMSPRSGPHRYIFDKGSG----------------------------------------------------------------------------------------------------RWIGEADKHDFQGMLTRDIIQSACGIPDF 235
BLAST of mRNA_Ecto-sp6_S_contig101.796.1 vs. uniprot
Match: A0A6V1TFF4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TFF4_HETAK) HSP 1 Score: 102 bits (254), Expect = 2.920e-21 Identity = 56/162 (34.57%), Postives = 87/162 (53.70%), Query Frame = 1 Query: 340 SWKGTWEICYAPHIQILAKVILTEFPSVLYNFVSDDGRMVSHSRYESKVFGSGWFNADGRVVVLPASGGGTNEAPRQTVQVIFERFWWD-RSGEDRPTG--------EPPGSSATPVDGFVQAAGKAMFFDGLSVFPVHYLDDDFCVFEFKAAGTVVASQRI 798
++KG W +C+APHI L+K+ LTEF + Y+ + + + S+ RY + + G+GW NA G + V +V++ F+ FWWD ++ E R PP SAT V VQ GKA F + S+FP+ YLD+ C+FEF G + + ++
Sbjct: 27 TYKGVWSVCFAPHIYTLSKIFLTEFKPIEYHLLPGNS-IESYVRYSNPLIGAGWLNAAGSIDVRDD----------MSVKITFDNFWWDIQTSEPRSLETFLQDFRTSPP--SATDV--LVQNIGKAGFLESFSIFPLQYLDETLCIFEFPPLGVKIVASKV 173
BLAST of mRNA_Ecto-sp6_S_contig101.796.1 vs. uniprot
Match: A0A835Z4A1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4A1_9STRA) HSP 1 Score: 103 bits (257), Expect = 8.630e-21 Identity = 57/154 (37.01%), Postives = 84/154 (54.55%), Query Frame = 1 Query: 334 TRSWKGTWEICYAPHIQILAKVILTEFPSVLYNFVSDDGRMVSHSRYESKVFGSGWFNADGRVVVLPASGGGTNEAPRQTVQVIFERFWWDRSGEDRPTGEPPGSSATPVDGFVQAAGKAMFFDGLSVFPVHYLDDDFCVFEFKAAGTVVASQR 795
T++ KG W +C+APHI ++ T+F V + G S+ ++ S +FGSGW NADG +V A G Q V + F+R+W DR D A+ +D +QAAG+ +F LS FP+ YLD+D CVF+F T +A++R
Sbjct: 104 TQAAKGRWVVCHAPHIAAGGILLQTKF--VPEYWFDGQGNTSSYVKFTSSIFGSGWLNADG--IVYSADDG-------QAVVIEFKRYWMDRGTADPSLTPDVKRGASQMDSVIQAAGEGLFIKPLSYFPIKYLDEDLCVFDFPPLNTRIAARR 246
BLAST of mRNA_Ecto-sp6_S_contig101.796.1 vs. uniprot
Match: A0A0G4HTV7_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HTV7_9ALVE) HSP 1 Score: 100 bits (249), Expect = 2.680e-19 Identity = 55/154 (35.71%), Postives = 85/154 (55.19%), Query Frame = 1 Query: 343 WKGTWEICYAPHIQILAKVILTEFPSVLYNFVSDDGRMVSHSRYESKVFGSGWFNADGRVVVLPASGGGTNEAPRQTVQVIFERFWWDRSGEDRPTGEPPGSSA---TPVDGFVQAAGKAMFFDGLSVFPVHYLDDDFCVFEFKAAGTVVASQR 795
W G W++ +APHI+ L+K++L + V Y+ ++ S+ Y+S G GW A G +V G G +TV V+F+ F W+ +DRPT PG + VD VQ G+ FF+ LS+FPV +LDD C+F+F+A + ++R
Sbjct: 142 WDGVWQVAHAPHIRKLSKLLLCKLGPVEYSISQKGSQISSYCLYQSPFIGRGWLAAAGGLVREKPGGAG-----EETVTVVFDSFRWEPL-KDRPTILRPGDGKKMKSLVDVVVQKLGELTFFENLSLFPVRFLDDRLCLFDFEAVSLPIVAKR 289
BLAST of mRNA_Ecto-sp6_S_contig101.796.1 vs. uniprot
Match: A0A7S3ANS9_9EUKA (Hypothetical protein n=2 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ANS9_9EUKA) HSP 1 Score: 96.3 bits (238), Expect = 5.600e-19 Identity = 57/140 (40.71%), Postives = 77/140 (55.00%), Query Frame = 1 Query: 349 GTWEICYAPHIQILAKVILTEFPSVLYNFVSDDGRMVSHSRYESKVFGSGWFNADGRVVVLPASGGGTNEAPRQTVQVIFERFWWDRSGEDRPTGEPPGSSATPVDGFVQAAGKAMFFDGLSVFPVHYLDDDFCVFEFKA 768
G W + +APHI L++++LT F + + G MVS+ RY S+V G GW G V A AP+ V +I++R WW GE PP +S + VQA G+A F +GLSVFPV YL DD C+F F+A
Sbjct: 48 GRWRVVHAPHIDTLSRLLLTTFD--IEYCMDARGGMVSNVRYSSRVAGDGWLCTSGVVASDLA-------APK--VSIIWDRIWWLPGGE---ADAPPRASEGILRPIVQALGRAGFIEGLSVFPVRYLQDDLCIFNFQA 173
BLAST of mRNA_Ecto-sp6_S_contig101.796.1 vs. uniprot
Match: A0A250X3A6_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X3A6_9CHLO) HSP 1 Score: 90.5 bits (223), Expect = 1.760e-16 Identity = 50/155 (32.26%), Postives = 81/155 (52.26%), Query Frame = 1 Query: 346 KGTWEICYAPHIQILAKVILTEFPSVLYNFVSDDGRMVSHSRYESKVFGSGWFNADGRVVVLPASGGGTNEAPRQTVQVIFERFWWDRSGEDRPTGEPPG---SSATPVDGFVQAAGKAMFFDGLSVFPVHYLDDDFCVFEFKAAGTVVASQRIA 801
+GTW++ +APHI ++ V+ +F +LY D ++ S+ +Y + G GW NA G + TV + F+RFW D G + E P S +D ++ G+ FF L++FP+HYLD++ CVFEF + +A Q+I+
Sbjct: 84 QGTWKVFHAPHISRISSVLGAKFDPILYKLEGD--KLSSYVKYSHPLVGMGWLNAAGSM----------GRKYDDTVDIHFDRFWLD--GPETLREEIPRDAYSGLKDMDDWMSKLGRGFFFPQLALFPIHYLDEELCVFEFPPLNSKIAVQKIS 224
BLAST of mRNA_Ecto-sp6_S_contig101.796.1 vs. uniprot
Match: A0A7S2NPB5_9EUKA (Hypothetical protein n=1 Tax=Cyanoptyche gloeocystis TaxID=77922 RepID=A0A7S2NPB5_9EUKA) HSP 1 Score: 89.7 bits (221), Expect = 6.950e-16 Identity = 62/200 (31.00%), Postives = 96/200 (48.00%), Query Frame = 1 Query: 205 KKSFLQNLERKRAGEEVASSALNADLHVLRSTPTQSSTTTVDNTRSWKGTWEICYAPHIQILAKVILTEFPSVLYNF--VSDDGRMVSHSRYESKVFGSGWFNADGRVVVLPASGGGTNEAPRQTVQVIFERFWWDRSGEDRPTGEPPGSSATPVDGFVQAAGKAMFFDGLSVFPVHYLDDDFCVFEFKAAGTVVASQRI 798
K+SFL + +A E+ +N + L +T Q T + S+ G W++ YAPHI+ + ++ T F + Y + R+ S+ RY+ GW NA G + + S +V+++F FW + T + P AT AAG+ +FF+GLSVFPV Y D D VFEF GT++ R+
Sbjct: 84 KRSFLDTV--LKANEDRRKVDVNDLIEKLSAT--QGVTEPAYHLESFVGRWKVIYAPHIRNMEGILFTRFDPIEYVLQPAGEAMRIESNVRYQLGP-AQGWLNASGTIQPVDTS----------SVRILFSHFWTSSARPSPTTRDAPDVVATLPAQLTNAAGRLLFFEGLSVFPVRYSDSDLAVFEFPPLGTLLVISRV 268
BLAST of mRNA_Ecto-sp6_S_contig101.796.1 vs. uniprot
Match: A0A6U0ESK7_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A6U0ESK7_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 2.160e-9 Identity = 51/162 (31.48%), Postives = 81/162 (50.00%), Query Frame = 1 Query: 349 GTWEICYAPHIQILAKVILTEFPSVLYNFVSDDGRMVSHSRYESKVFGS-GWFNADGRVVVLPASGGGTNEAPRQTVQVIFERFWWDRSGED-----------RPTGEPPGSSATPVDGFVQAAGKAMFFDGLSVFPVHYLDDDFCVFEFKAAGTVVASQRI 798
GTW++ YAPH+ +AK+ EF V Y + DD M SH+RY+ +F G+ + G G N+ +V F++ W + D + E P S++ V + GK F + +SVFP+ YLDDD CVF+F+ GT + ++++
Sbjct: 142 GTWKVVYAPHMTTMAKLGGGEF-QVEY-ILRDDLTMDSHARYDFPLFKQRGYLSVSGTY-------GSVNDL---VCRVDFDQSWVKQLPVDEDIIVEKDVPYQSITEVPDSASKQV---ITTIGKLFFLEQVSVFPISYLDDDLCVFDFELLGTRICARKV 288
BLAST of mRNA_Ecto-sp6_S_contig101.796.1 vs. uniprot
Match: A0A7S1YML6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YML6_9STRA) HSP 1 Score: 67.8 bits (164), Expect = 2.140e-8 Identity = 48/162 (29.63%), Postives = 74/162 (45.68%), Query Frame = 1 Query: 349 GTWEICYAPHIQILAKVILTEFPSVLYNFVSDDGRMVSHSRYESKVFGS-GWFNADGRVVVLPASGGGTNEAPRQTVQVIFERFWWDRSGEDRPTGEPPGSSATPVDGFVQA-----------AGKAMFFDGLSVFPVHYLDDDFCVFEFKAAGTVVASQRI 798
G W++ YAPH+ +A + E V Y+ + +D M SH+RY+ F G+ + G G NE +V F++ W+ D G+ P Q G MF + +SVFPV Y+DDD CVF+F+ GT + +++I
Sbjct: 136 GLWKVIYAPHMTTMANIGGGEL-DVQYD-LKNDFTMTSHARYDFPFFKQKGYLSVSGTY-------GSVNEL---VCRVDFDQAWFKPFYIDEEDGKMTEEEDVPYASIEQVPDSIGKSIITNVGNLMFLESVSVFPVSYMDDDLCVFDFELLGTRIVARKI 285 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig101.796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig101.796.1 >prot_Ecto-sp6_S_contig101.796.1 ID=prot_Ecto-sp6_S_contig101.796.1|Name=mRNA_Ecto-sp6_S_contig101.796.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=268bp MVLRSLFLVALPISLNLGSAFLLPSVQQVVLPDTSTAIVRHQHDTGSRSMback to top mRNA from alignment at Ecto-sp6_S_contig101:267217..271560- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig101.796.1 ID=mRNA_Ecto-sp6_S_contig101.796.1|Name=mRNA_Ecto-sp6_S_contig101.796.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4344bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:267217..271560- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig101:267217..271560- >mRNA_Ecto-sp6_S_contig101.796.1 ID=mRNA_Ecto-sp6_S_contig101.796.1|Name=mRNA_Ecto-sp6_S_contig101.796.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=804bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:267217..271560- (Ectocarpus species6 EcLAC_371)back to top |