mRNA_Ecto-sp6_S_contig101.793.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig101.793.1
Unique NamemRNA_Ecto-sp6_S_contig101.793.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig101.793.1 vs. uniprot
Match: D7FPM6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPM6_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 3.480e-17
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:    1 MTRPPLLTADWPPSGIKEMASFGLLPVLNLSCRRLV 108
            MTRPPL TADWPPSGIKEMASFGLLPVLNLSCRRLV
Sbjct:    1 MTRPPLPTADWPPSGIKEMASFGLLPVLNLSCRRLV 36
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig101.793.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FPM6_ECTSI3.480e-1797.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig101contigEcto-sp6_S_contig101:257119..257603 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size111
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-16_001400.1
Cds size111
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348731.5773668-CDS-Ecto-sp6_S_contig101:257118..2571611682348731.5773668-CDS-Ecto-sp6_S_contig101:257118..257161Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 257119..257161 -
1682348731.5849602-CDS-Ecto-sp6_S_contig101:257535..2576031682348731.5849602-CDS-Ecto-sp6_S_contig101:257535..257603Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 257536..257603 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig101.793.1prot_Ecto-sp6_S_contig101.793.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig101 257119..257603 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig101.793.1

>prot_Ecto-sp6_S_contig101.793.1 ID=prot_Ecto-sp6_S_contig101.793.1|Name=mRNA_Ecto-sp6_S_contig101.793.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=37bp
MTRPPLLTADWPPSGIKEMASFGLLPVLNLSCRRLV*
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mRNA from alignment at Ecto-sp6_S_contig101:257119..257603-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig101.793.1 ID=mRNA_Ecto-sp6_S_contig101.793.1|Name=mRNA_Ecto-sp6_S_contig101.793.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=485bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:257119..257603- (Ectocarpus species6 EcLAC_371)
ATGACACGGCCACCCTTGCTCACGGCGGATTGGCCGCCTAGCGGAATCAA
GGAGATGGCTTCATTTGGGTGTGTTTTGCTCCTGCGTGTGTGTCAAACCG
GCCGTCCTGCTACCCCGACTCAGAAACGCTGGTAGTTTGTAACTCGGTAG
GTACCTTATTACAGTCGATGATTTTTGTCGTTTATCTCTTGTATGAGTAC
ACTGGGAAAGAGGGAGGGGAGGGGAGGGCATGGGCAGTGTAGTAGCCTTG
GCGACTATTTTGCAGTGCAAGAGGGGCCCCGCACCGTGTTTTGAGAGACA
CCCAATCCGTTCACACGATGGATCGGCGCTCTCTTGTTTTGGTCTTTATC
TCCGTTGCTCCCCTCCCTCCCCGTCTGCGGCGGCGTTATGCTTGTACTAT
CAGCTTACCCGATCCCTCTTTCGTCTTTTGTCTTGAGAATAGTTTGTTGC
CGGTGTTGAACTTATCCTGTCGTCGTCTGGTCTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig101:257119..257603-

>mRNA_Ecto-sp6_S_contig101.793.1 ID=mRNA_Ecto-sp6_S_contig101.793.1|Name=mRNA_Ecto-sp6_S_contig101.793.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=111bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:257119..257603- (Ectocarpus species6 EcLAC_371)
ATGACACGGCCACCCTTGCTCACGGCGGATTGGCCGCCTAGCGGAATCAA
GGAGATGGCTTCATTTGGTTTGTTGCCGGTGTTGAACTTATCCTGTCGTC
GTCTGGTCTGA
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