mRNA_Ecto-sp6_S_contig101.790.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig101.790.1
Unique NamemRNA_Ecto-sp6_S_contig101.790.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig101.790.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 6.260e-6
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = -1 
Query:   40 LRADEALRKQDRVMTAFRGYAGDTARDLDNASCHQVHLDS 159
            LRADEALRK +RVM  FRGYAGDT R+LD     +  ++S
Sbjct:  100 LRADEALRKHERVMATFRGYAGDTERELDTLVLSKFGIES 139
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BLAST of mRNA_Ecto-sp6_S_contig101.790.1 vs. uniprot
Match: A0A6H5K101_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K101_9PHAE)

HSP 1 Score: 48.1 bits (113), Expect = 5.550e-5
Identity = 22/28 (78.57%), Postives = 24/28 (85.71%), Query Frame = -1 
Query:   76 LRADEALRKQDRVMTAFRGYAGDTARDL 159
            LRADEALRK +RVM  FRGYAGDT R+L
Sbjct:  140 LRADEALRKHERVMATFRGYAGDTEREL 167
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig101.790.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K1H7_9PHAE6.260e-660.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K101_9PHAE5.550e-578.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig101contigEcto-sp6_S_contig101:227638..231729 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size159
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size159
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348731.413257-CDS-Ecto-sp6_S_contig101:227637..2277271682348731.413257-CDS-Ecto-sp6_S_contig101:227637..227727Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 227638..227727 -
1682348731.4221861-CDS-Ecto-sp6_S_contig101:231660..2317291682348731.4221861-CDS-Ecto-sp6_S_contig101:231660..231729Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 231661..231729 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig101.790.1prot_Ecto-sp6_S_contig101.790.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig101 227638..231729 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig101.790.1

>prot_Ecto-sp6_S_contig101.790.1 ID=prot_Ecto-sp6_S_contig101.790.1|Name=mRNA_Ecto-sp6_S_contig101.790.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=53bp
YVDEERCEVTTSCGVEMHLMARSVVEVPRRVACIAAKSCHYPVLLAKGFV
RP*
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mRNA from alignment at Ecto-sp6_S_contig101:227638..231729-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig101.790.1 ID=mRNA_Ecto-sp6_S_contig101.790.1|Name=mRNA_Ecto-sp6_S_contig101.790.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4092bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:227638..231729- (Ectocarpus species6 EcLAC_371)
TATGTCGACGAAGAAAGATGTGAAGTCACGACGTCGTGTGGAGTCGAGAT
GCACCTGATGGCAAGAAGCGTGGAGGAGGAGGTGGTGGAGGTGGAGGAAG
GAGGAGTAAAGGAGGAGTAAAAGGAAGGGCGACCAAGCAAGCACGGTGAA
TATGACTGATGGATGGCGGTGGTGACAATGTTAGGGACGTGACTCATCCT
ACCCTCTGCGTTCTTTATGGCACACCCACCCGTAGCCAAGAGACGTGGGA
ACTGAAGGATGGGGACGTGGTAAGCAAACTAGGGAAATAACCGGTGGGTA
GGGAAGGCAAGGAAGGGCTTAGACCCGAAGAAAAGGGGGAGGGGGGGAGT
CGGATTCCTGGTCAAGGAACACTTGTTTGACGTGGTGGAAGTAGTGGTGA
AAACGGGGTTCGAGGAAAGCCTATGGCTTGAGATACCTGGAGAGCGGGGT
GAGAAAGATTTGTTTGTAGGGAACGTATACGTCCCACCGTCGTCGAAGAA
AGTCGCAAGCAAGGCGCAGGAGAACTTCGGACAAATTGCGGAAGATGTCC
AGAGGTTCAGTAGGAAGGAGAAGTTGTCATGGTGGGCGATTTCAACTCCA
GAGTAGGGAAAGCTTGCAGTAGAGGACAGGCGATCGGGCAGCACGGAGAA
GACAAAGCGAATGACGACGGAGTGAGTATGCTTGGATTCTTGGGAAGCAA
CGAGCTGATGGTGTTGAAAGGTAGGAGGGAATGCGATAAGCCGGAGTTCA
CCAGGCATAGGGCAGTTCGCAATGAATACTCGATCCTCGACTTCATCCTG
GTAGATAGGGGGAGCACACAGGTCCCAGGGCTGCACGTAAGTGCGATAGA
TATAGGTTCGACCGACCATTTCCTCATATGGGCAAGCATCGACCGATCTA
GAAAGACGGAGAGTAAGAAACAGAGGAAAGTGTTCCGGTGGAAAGTAGAG
CGTTTGGGAGACGAGGGGACACGGGATGAATTCCAGAAAGGACTGGCTGG
TAGTGTAGAACCCTTCAGGAAACTGCTGAGAAGCGTCGAAGACGGACAGG
CAGACGTGCAAGTAGCAGGGGACAGGGTGATTGAAGGATGGGAGTCCATA
GTGAACATAACGGCAGAGAGAGTAGTGGGAAAGAAGGTGGTACGATGTGG
GGTATCGGTTAAATGGTGGGATGACGAGCTGAAAGAAGAAATAGGGGAAC
GTAGAGAAGTCTTCAAGCAGTACCTAGGTGAGGGGTCTGAGGAGAGTTGG
GAAAAGTACAGGGCCAAGAGGAAACAGGTGAAGGGACTAGTGAAAACATT
TGGGACGAAGTAGTGCAGAAGGCCAACGGAGGCCTGGAGGGGAACACCAA
GCAGATGTGGGAAGGGATTAGTGGGATGGTAAAAAGACCGCGCAAGGGGG
GATACAGGGGTAGCAACTCTGCGAGGTGTGAATGGTGGACTAGTCAGCAG
TGGGGAAGGAAAAAGGGAAGTTCTAGCGGGACACTACAAGAGACTTAGAG
TGCCTTCGGAGAATGAAGCTTTTGACCAAGTGTTTAAGAAGGAGGTGGAC
GCATGGGCCCAGGAAGAAGAAGAAACATCGAAGGCAGAGGTTGGGAACGT
AGAACTAGAAAAGGAGTTCACTGAGGACGAGGTTGAGGCGTGTGTGAACA
AGTTGAAGTGCCACAAAGCAGCAGGGGTGGATGGGATAGTCAACGAGTTC
ATGAAGTTTGGGGGGAAGGGGATGAAGCAGTTGATGGTACTGCTGTACAA
CTGGGTGTGGAAAAACGAATATGCGCCAAGTAGATGGAGCGAAGGAGTGG
TTGTGAGCTTGTTTAAGAAAGGAGTGGGGGATCGAGGAGATTGCAGTGCT
GGACCAGTACACATACCTCGGAGTAGAGATCGTAAACGACTGCTCGTGGA
ATGCACACATGTCCAAGGTAGCGGAAAAGGGCAAAGCGCGAACAGGGAAG
CTACATCCAATACTCGCAAACCGGCACCTCGATACACGCATCAAATTGGC
GGTTTTGAAGAGCGTAATCGTACCGCCGCTAGAGCACACCGGAGAAGTAT
GGGACGGAAATAAGGTAGTGAAAGAACCCGAGGCGGCGCAGATGAAACCA
GCAAAAATTATCCTAGGATGCTCCAAGCGCGCAAGTAATGCAGCCGTCAG
GGCAGAATTGGGGATCCAGTCCCTACGGTCGGGAAGAGACGCAAGGAAGC
TGACATGGCAATATCGCATGTGCGGGATGGGAGAGGAGAGGTTGCCGAGA
ATAGTATGGGAGGCGAAGCGGGCAAACAAAAAGCGGGATAGGCCACCCAC
GGAATGGGTCAAGGTTGTAGAGGACGTATGGAAGGGGTTGGACATCGACG
AAGATGAAACGCTGGAAACGGAGGGTCTACAGGGGTTCAAGGAGAAGATG
AGAGAAGAACGGAATCTAAGGAAAGAAACCAAGGATAAGGAGGGTCTAGA
AGTGTACGGAATGTTGAAAGAAGGAACAGGGTTCAAGGACTACCTACATG
GACCAATGGATGCAGGGACAAAGCTTAAGGTCAAATTCAGGACCGGGGAC
ATAGGCCTTCGAGAACGTCGACGAAGACAAAGGACGGTAGACGACGAAGA
CGACAAGTTCAAATGTGATTGCGGCTTCGAGTGCGAAGACCGTGTTCATG
TAGTCGCGGAATGTCCGTGGTACAAAGAGGAGAGGGAAGTGTACATGACC
GAGCTGGGAAAAATACAAGGGACGTACAGGGAGATGTTTGAGGCATGGAA
TAGAGAGGAGAGGACGGTAGCTGTACTGGGGAATAGGAAGTGGTTTGAAA
AGGCGGGAAGGGATATCGTTAGGATAGACAGACTAGGGAAGACATTTTTG
AGCCACCTTTGGCAAAGTACGAAGGAACGATTGGCCATCGGTGATCGGTC
CTGTGAATGCTCCGTCCTCTGTACGCCCCCCACCCGTACCCTGATCGTCT
GCTTTTGGTCGAAAGCCTTAGAAGTACATAGTAGACGAGGCGTTCACGGC
GGATTGCTACACTAATAATGGCCTGATGGTATGCTTGATGAATTGATTGA
AATGAAGAGCAGAATAGATGAGTGGCAGATGGTCTGATGATATGGACCCG
CCCACCCCCCCCCTCCCCATGCACAAAATCAACAATGGTTAGCTTACCGT
TTAGTGACGTGATCTCTTGGGAGGACGTTCGTTAGAGGCGGAAGAGGAAC
TCCCGCCGCCGGAGTTGGGGTTGTACCGTTTGACGGGGGAAGCAGATGTT
GAAGAAGGCGAAGACTTGTCGTGCATCTGGGCCCGGACGGACTCCATGAA
GACAGTCCGCCGCTTGACAAAGTAAGGGCGACAGACCTGTCTGTCGGGGT
CGCGAGACTCGCTTGAGGTGTCGAAGTGTTCTAATTTAGATCTACCTTCG
CAGGACTTGCACTGCGTGGATTTGGACGGTACGTAAGAGTCACACCACAT
GTCCGGGTCCAAATGGGCGTACCTGACCACGGCCCGTTTTTAGTCTTTCG
ATTCAGTCACAATATTCTTTGCGACTATGGCATCACTTTGAAATTTGACG
TCACAAACAAAACTCTTCGCCGTTGCAATGTCGCGCGGATTAATCTTGGT
TATCCACCGGCCGCACCCAGCGTGGGGGCAGCGGTTCGAGTACTGCGACA
TTATGGGAGAGCCGTCTCCCTCCCGGTCCATGGTCGTAAGACACGACAGA
CATTTGAAGGCTTGAGCCATTTCTTCTGCAAAATGAAATGATGCAAAGCA
GGCAGTCGGGGGAAATATGAAGGGTTTATTTGGTATATATGCGTTCATTG
TGCACTGTCAACGTGATCCTTTGTTCGAATTGGGTACGCTGCGGCGCGCT
CGACGAACGTTGCCTTTTGCAGCTCATCGGGTAGGGTACCGACCCAAAAC
CCGTTCGCCAATGCTGCATCAGGTAATTTGTTCTTCGCCAACGACCGGTA
GCACTATCTTGCATGGTTCCTCTGACTCGATACCGTACTTACTTAGAACG
AGGTTGTCGAGGTCCCGCGCCGTGTCGCCTGCATAGCCGCGAAAAGCTGT
CATTACCCTGTCCTGCTTGCGAAGGGCTTCGTCCGCCCTTAA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig101:227638..231729-

>mRNA_Ecto-sp6_S_contig101.790.1 ID=mRNA_Ecto-sp6_S_contig101.790.1|Name=mRNA_Ecto-sp6_S_contig101.790.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=159bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:227638..231729- (Ectocarpus species6 EcLAC_371)
TATGTCGACGAAGAAAGATGTGAAGTCACGACGTCGTGTGGAGTCGAGAT
GCACCTGATGGCAAGAAGCGTTGTCGAGGTCCCGCGCCGTGTCGCCTGCA
TAGCCGCGAAAAGCTGTCATTACCCTGTCCTGCTTGCGAAGGGCTTCGTC
CGCCCTTAA
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