mRNA_Ecto-sp6_S_contig101.780.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig101.780.1
Unique NamemRNA_Ecto-sp6_S_contig101.780.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig101.780.1 vs. uniprot
Match: D7G2U7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2U7_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 9.520e-52
Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 1 
Query:   22 MLPTAQPAPAMDSSVNAEVKLEPTGVVKQFEDLIETVISTIQEPEVTEAGVAAVMARLQAYSDGINRLVETLPPEAANGNERGVGVGRAGV 294
            MLPTAQPAPAMDSSVN EVK+EPTGVVKQFEDLIETVISTIQEPEVTEAGVAAVMARLQAYSDGINRLVETLPPEAANGNERGVGVGRAGV
Sbjct:    1 MLPTAQPAPAMDSSVNTEVKVEPTGVVKQFEDLIETVISTIQEPEVTEAGVAAVMARLQAYSDGINRLVETLPPEAANGNERGVGVGRAGV 91
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig101.780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2U7_ECTSI9.520e-5297.80Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig101contigEcto-sp6_S_contig101:89010..91368 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size756
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-16_001540.1
Cds size276
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348729.2332935-UTR-Ecto-sp6_S_contig101:89009..894681682348729.2332935-UTR-Ecto-sp6_S_contig101:89009..89468Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig101 89010..89468 -
1682348729.275698-UTR-Ecto-sp6_S_contig101:91347..913681682348729.275698-UTR-Ecto-sp6_S_contig101:91347..91368Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig101 91348..91368 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348729.2460735-CDS-Ecto-sp6_S_contig101:89468..896511682348729.2460735-CDS-Ecto-sp6_S_contig101:89468..89651Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 89469..89651 -
1682348729.268635-CDS-Ecto-sp6_S_contig101:91254..913471682348729.268635-CDS-Ecto-sp6_S_contig101:91254..91347Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 91255..91347 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig101.780.1prot_Ecto-sp6_S_contig101.780.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig101 89469..91347 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig101.780.1

>prot_Ecto-sp6_S_contig101.780.1 ID=prot_Ecto-sp6_S_contig101.780.1|Name=mRNA_Ecto-sp6_S_contig101.780.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=92bp
MLPTAQPAPAMDSSVNAEVKLEPTGVVKQFEDLIETVISTIQEPEVTEAG
VAAVMARLQAYSDGINRLVETLPPEAANGNERGVGVGRAGV*
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mRNA from alignment at Ecto-sp6_S_contig101:89010..91368-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig101.780.1 ID=mRNA_Ecto-sp6_S_contig101.780.1|Name=mRNA_Ecto-sp6_S_contig101.780.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2359bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:89010..91368- (Ectocarpus species6 EcLAC_371)
GTCTCTCGTTTGACGTGCAGCATGTTGCCAACAGCACAACCAGCGCCAGC
AATGGATTCTTCCGTGAATGCGGAGGTGAAGCTGGAGCCGACGGGGGTCG
TCAAGCAGTTCGAGGTGAGCGAAATAGCGCGTGAAGAACACAGATGGAGA
TTCTCCACCTTTTCCCCTGTTGCTCGGAAACGAACGCCCTTTGCTTGCCT
TGTTGGCATCGCGTGATTTTGAATCACGAAGCAGGCGTGCTGATGGCGAA
CGGCCGCGGAGATGCGGCGTTCCTGTTACTCCAGCCGTATGCCGACTCCT
TTCTGTACCGCACGTGCTGCGAAAGAGTGGGGTATGGCTGCACGTGAAGT
GTCCGCACGGAAATACTGCTGTTGAACGGCTCGTAGATCCCGCTCTCTCA
CCTTTTCTCCCCCCTTTCCCCAACCTACACACCGAAAGCTGTGCGTGTTT
TGAACTCTTACCGCCATGCCAGCGATCGAGTTCAAACCCATACTAGCGTC
TTTCACTTGTTATTGGTTCAAAAGTACTCGCTACGCAGGATACGGTGGTC
AGGTCAAGCCCTCCCGTTATTTGACACCTCAGCGCATACATTGGCAGTGT
ACATGGAGCGGACCCTTCCCACAAGATCCCCTCGTACGCGGACAATCTCG
TTTTCCAAAGTCAAACCCGCATGCGCCAGTCCAAAAGCGAACGGCCTGGT
CTTTCCCAGTCCCGAGAGATGTCATTCAGCCGCAACATGGGATTTTGGAG
GGGTTCGGCAGTGTAGTAACAGCAGTTTTGCTTCATTGGCGTTTGGGATG
GAGAGCAATCACGCACGTACTTCGAGCCCATGTCTCCCCCCCCCCCCCGC
TACGTAGAGGGCCCATCGTCGAAGACTTGCGGTATAGGCCCGGCCCAGGC
TCCATACATCCCCTTCAGCGCCCCGACCGGCGCGTGTGCAAGCCCGGGGC
ATCATGCCCTTACCTGCCTTGTCTTTTTTGTTCAGATGTCAAAGATAAAT
TGAACGCTGAACTGGCTTCGCGCAGCGGCATGACGTGCGCGTCTGGGGGT
TGTTCGCGGCTAACAAAAATGTGTTGTCGACATGTTGTTGGAGGCGCTGG
CTATGTGACCAGCTGACCGAGTCCTCTCAGGGGTGGATGTACGCGCTTGA
ACGAGGTCCACTCCTGGTTGGATTGCGTGCATATCCTCTCTGGCAGCAGT
GAGAGAGGTGTGGCGCTCTCTTGCAGGCGGTACCTCCGCCGTGAAGCGTC
TACGGCATGTCCTTCTTTGCTCTCGTTTGAAATTCAAGACTACCGCTCTG
TCCGGAAACCTATGGCAGATTTGGAGTTATGATAGGCCCGAAAGCAGCAG
CAACGTTCGCTAGGAGTGCCGGGTGCGCCTAGCTGTCTCCGTACGGCATG
TTCTTGGCTCGAGTTGGCGTTCTCCGCGTGTACAGTCGTCGTTCTTGGAT
CGAACGAAGAAAATGCACCAAGCGGATCATTCGTGGGCATTCCTCTCTCC
CTCCCTCCCCCCCCCCCTTCCCTTCGAAACAACAAACATCACACCGGCGT
GTTCACACCAACAATAACGCCACAAATACCGCTCTCGCAGTTGTAAAAGC
CCACACCAGCAGTAACAGCAGTTGCTTGGTCGTGCCTTCCAACCATCGTG
CGTCTCCATTCGTTTACCCCCCCGCTCTCCTCTCCTTGCGCGCCCCGCCC
TCGGCACTGGTGCTCAGGACCTGATTGAGACGGTCATCAGCACCATCCAA
GAGCCGGAAGTCACGGAGGCCGGCGTCGCGGCCGTAATGGCGAGGCTCCA
GGCTTACAGCGACGGGATAAACCGGCTCGTCGAGACCCTGCCGCCAGAGG
CCGCCAACGGCAACGAGAGGGGCGTAGGAGTAGGGCGGGCAGGGGTTTGA
TGAATACTGAGATTTGGGGTGAGATTTTGTTTCACTTGGGAGGGAGAGCC
GCGTAGGTATTACTAAAAATATTCTATTGTCCTTTTTTTTTCTTTACGCA
GCTCGTTCCTCTTTTTACTTCCTCGCACCCTGTATTGCTACCGCTTCTGG
AGTTTCCCCTTGATCTGAGACTGCGTTTTGGTGGTCGGCGACGAGGATCA
GCCGTCGCTCTCAACCTCGTTCTCAACCGCATGTCGGCTGGCTTGCATTG
ACAGCATTCCCTTGAGCGCTGGGCTTGATTTTCTTGAGGTAGACTTATCG
GCAATTGCTTGTTCCGTGTGCGGGCCGGCCACTATGAAGCGCCCCGGCGA
TGACTGCAGTCTCTTGTCTGGTACTGGTGCAATCGGCCTCGGGGCCTGTC
GGGTGCTATTTGCCGTCGTGCCATACAATCGATTTCGATTCCCAACGCAA
AAGAGGAGG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig101:89010..91368-

>mRNA_Ecto-sp6_S_contig101.780.1 ID=mRNA_Ecto-sp6_S_contig101.780.1|Name=mRNA_Ecto-sp6_S_contig101.780.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=276bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:89010..91368- (Ectocarpus species6 EcLAC_371)
ATGTTGCCAACAGCACAACCAGCGCCAGCAATGGATTCTTCCGTGAATGC
GGAGGTGAAGCTGGAGCCGACGGGGGTCGTCAAGCAGTTCGAGGACCTGA
TTGAGACGGTCATCAGCACCATCCAAGAGCCGGAAGTCACGGAGGCCGGC
GTCGCGGCCGTAATGGCGAGGCTCCAGGCTTACAGCGACGGGATAAACCG
GCTCGTCGAGACCCTGCCGCCAGAGGCCGCCAACGGCAACGAGAGGGGCG
TAGGAGTAGGGCGGGCAGGGGTTTGA
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