mRNA_Ecto-sp6_S_contig101.772.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig101.772.1
Unique NamemRNA_Ecto-sp6_S_contig101.772.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig101.772.1 vs. uniprot
Match: A0A6H5L8R1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8R1_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 1.580e-50
Identity = 115/119 (96.64%), Postives = 117/119 (98.32%), Query Frame = 1
Query:    1 MDPDVFAQLPPDMQQEVVREHRSTVGSMEDQAELLEAAGLXXXXXXXXXXXXXXXXLEQEARNRRLREAPGNAGGPADPSRASEMDNASFVATLPPELRREVLLSADDALLSTLPPNLV 357
            MDPDVFAQLPPDMQQEVVREHRSTVGSMEDQAELLEAA  XXXXXXXXXXXXXXXXLEQEARNRR+REAPGNAGGPADPSRASEMDNASFVATLPPELRREVLLSADDALLSTLPP+LV
Sbjct:  516 MDPDVFAQLPPDMQQEVVREHRSTVGSMEDQAELLEAAXXXXXXXXXXXXXXXXXXLEQEARNRRMREAPGNAGGPADPSRASEMDNASFVATLPPELRREVLLSADDALLSTLPPDLV 634          
BLAST of mRNA_Ecto-sp6_S_contig101.772.1 vs. uniprot
Match: D7G3W3_ECTSI (HECT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3W3_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 1.980e-33
Identity = 73/91 (80.22%), Postives = 74/91 (81.32%), Query Frame = 1
Query:   85 EDQAELLEAAGLXXXXXXXXXXXXXXXXLEQEARNRRLREAPGNAGGPADPSRASEMDNASFVATLPPELRREVLLSADDALLSTLPPNLV 357
            EDQAELLEAAGL                LEQEARNRR+REAPGNAGGP DPSRASEMDNASFVATLPPELRREVLLSADDALLSTLPPNLV
Sbjct:  602 EDQAELLEAAGLDPEALAALPADMRREVLEQEARNRRMREAPGNAGGPVDPSRASEMDNASFVATLPPELRREVLLSADDALLSTLPPNLV 692          
BLAST of mRNA_Ecto-sp6_S_contig101.772.1 vs. uniprot
Match: A0A7S4HZ14_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HZ14_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.020e-19
Identity = 59/122 (48.36%), Postives = 74/122 (60.66%), Query Frame = 1
Query:    1 MDPDVFAQLPPDMQQEVVREHRSTVG----SMEDQAELLEAAGLXXXXXXXXXXXXXXXXLEQEARNRRLREAPGNAGGPADPSRASEMDNASFVATLPPELRREVLLSADDALLSTLPPNL 354
            MD +VF  LPPDMQ+EV+ EH ST G    +     +L   + L             XX +EQE R RR RE    +  PADPS A EMDNASFVA+L P+LR E+LL+ADDA L +LPP++
Sbjct:  193 MDLEVFNSLPPDMQREVIAEHESTTGGGGSTAASDVQLDSTSALDPEALAALPEEMRXXVIEQERRERRAREEE-RSEPPADPSNAEEMDNASFVASLAPDLREEILLTADDAFLGSLPPDM 313          
BLAST of mRNA_Ecto-sp6_S_contig101.772.1 vs. uniprot
Match: A0A7S1VJ82_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VJ82_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.990e-16
Identity = 54/118 (45.76%), Postives = 70/118 (59.32%), Query Frame = 1
Query:    1 MDPDVFAQLPPDMQQEVVREHRSTVGSMEDQAELLEAAGLXXXXXXXXXXXXXXXXLEQEARNRRLREAPGNAGGPADPSRASEMDNASFVATLPPELRREVLLSADDALLSTLPPNL 354
            MD + F  LPPDMQQEVV +H+ T    E  A+L   +GL                + Q+   RR RE    A  PADPS A+EMDNASF+ +L PELR E+LL+AD+  L++LPPN+
Sbjct: 1770 MDAEAFNSLPPDMQQEVVSQHQITE---ELTAQLDPTSGLDPSVLAELPEDMRRDAIAQD---RREREEAARAAQPADPSNAAEMDNASFLVSLAPELREEILLTADENFLNSLPPNI 1881          
BLAST of mRNA_Ecto-sp6_S_contig101.772.1 vs. uniprot
Match: I2CQM8_NANGC (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQM8_NANGC)

HSP 1 Score: 79.3 bits (194), Expect = 2.600e-16
Identity = 52/119 (43.70%), Postives = 72/119 (60.50%), Query Frame = 1
Query:    1 MDPDVFAQLPPDMQQEVVREHRSTVGSMEDQAELLEAAGLXXXXXXXXXXXXXXXXLEQEARNRRLREAPGNAGGPADPSRASEMDNASFVATLPPELRREVLLSADDALLSTLPPNLV 357
            MDP+ FA LP ++Q+E+ +EH    G++      L  + L                L +EAR RR REA   A  PA+P+ A+EMDNASF+A+LPP+LR EVLL   D +L++LPPN+V
Sbjct:    1 MDPEAFACLPAEIQRELAQEH----GTLPTP---LPGSSLDPEALSALPEALRNEVLAEEARERRQREATA-ARAPANPANATEMDNASFLASLPPDLREEVLLQVTDEVLASLPPNVV 111          
BLAST of mRNA_Ecto-sp6_S_contig101.772.1 vs. uniprot
Match: A0A7S2Y5L7_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y5L7_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.720e-15
Identity = 73/119 (61.34%), Postives = 86/119 (72.27%), Query Frame = 1
Query:    1 MDPDVFAQLPPDMQQEVVREHRSTVGSMEDQAELLEAAGLXXXXXXXXXXXXXXXXLEQEARNRRLREAPGNAGGPADPSRASEMDNASFVATLPPELRREVLLSADDALLSTLPPNLV 357
            +DP+ F  LP +MQ +VVREH     S E  AEL + + LXXXXXXXXXXXXXXXX EQE R R  RE       PADPS A++MDNASF+ATLPPELR EVL +ADD  L++LPPNL+
Sbjct:  408 VDPEAFRALPREMQLDVVREHSQ---SSELAAEL-DGSTLXXXXXXXXXXXXXXXXXEQERRER-SRET--EEAAPADPSLAADMDNASFIATLPPELRAEVLATADDETLNSLPPNLI 519          
BLAST of mRNA_Ecto-sp6_S_contig101.772.1 vs. uniprot
Match: A0A835YKJ8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKJ8_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.690e-14
Identity = 66/119 (55.46%), Postives = 80/119 (67.23%), Query Frame = 1
Query:    1 MDPDVFAQLPPDMQQEVVREHRSTVGSMEDQAELLEAAGLXXXXXXXXXXXXXXXXLEQEARNRRLREAPGNAGGPADPSRASEMDNASFVATLPPELRREVLLSADDALLSTLPPNLV 357
            MD +VFA LP +MQQE++    +   +        +AAG   XXXXXXXXXXXXXX E EAR +RL  +  +   PADPS A EMDNASFVA+L P+LR E+LL AD+  LSTL PNLV
Sbjct:    1 MDAEVFASLPREMQQEILSPSSAAPPAQ------AQAAGWDPXXXXXXXXXXXXXXXEAEARRQRLAASAAD-DIPADPSHAQEMDNASFVASLAPDLRAEILLQADEQFLSTLSPNLV 112          
BLAST of mRNA_Ecto-sp6_S_contig101.772.1 vs. uniprot
Match: W7TP10_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TP10_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.930e-14
Identity = 51/119 (42.86%), Postives = 71/119 (59.66%), Query Frame = 1
Query:    1 MDPDVFAQLPPDMQQEVVREHRSTVGSMEDQAELLEAAGLXXXXXXXXXXXXXXXXLEQEARNRRLREAPGNAGGPADPSRASEMDNASFVATLPPELRREVLLSADDALLSTLPPNLV 357
            MDP+ FA LP ++Q+E+ +EH    G++      L  + L                L +EAR RR REA      PA+P+ A+EMDNASF+A+LPP+LR EVLL   D +L++LPPN+V
Sbjct:    1 MDPEAFACLPAEIQRELAQEH----GTLPTP---LPGSSLDPEALSALPEALRNEVLAEEARERRRREATATRA-PANPANATEMDNASFLASLPPDLREEVLLQVTDEVLASLPPNVV 111          
BLAST of mRNA_Ecto-sp6_S_contig101.772.1 vs. uniprot
Match: A0A8K1CG71_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CG71_PYTOL)

HSP 1 Score: 73.9 bits (180), Expect = 6.450e-13
Identity = 55/125 (44.00%), Postives = 63/125 (50.40%), Query Frame = 1
Query:    1 MDPDVFAQLPPDMQQEVVREHRSTV---------GSMEDQAELLEAAGLXXXXXXXXXXXXXXXXLEQEARNRRLREAPGNAGG-PADPSRASEMDNASFVATLPPELRREVLLSADDALLSTLP 345
            +DPDVFA LPPDMQ E+V +H             GS E  ++L                       E  A  RR REA   A   PAD SRA EMDNASFVA+L P LR E+L + DDA L TLP
Sbjct: 2754 VDPDVFASLPPDMQAEIVAQHAPAPAPTTSAPAGGSTEGLSQLEIDMANSSFDRETLEALPPDIRAEVLANERREREAAARAAETPADISRAEEMDNASFVASLAPGLREEILTTCDDAFLQTLP 2878          
BLAST of mRNA_Ecto-sp6_S_contig101.772.1 vs. uniprot
Match: A0A7S4S0Y2_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S0Y2_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 8.740e-13
Identity = 63/119 (52.94%), Postives = 83/119 (69.75%), Query Frame = 1
Query:    1 MDPDVFAQLPPDMQQEVVREHRSTVGSMEDQAELLEAAGLXXXXXXXXXXXXXXXXLEQEARNRRLREAPGNAGGPADPSRASEMDNASFVATLPPELRREVLLSADDALLSTLPPNLV 357
            MD +VF  LP +MQQEV+ +H++T   M    +L   +  XXXXXXXXXXXXXXXX     + RR+RE       PADP+ A EMDNASFVA+L P+LR E+LL+ADD  L++LPP+++
Sbjct: 1598 MDLEVFNSLPLEMQQEVIEQHQAT---MNVATQLDSTSSXXXXXXXXXXXXXXXXXXXXXXQERRMREQT-----PADPANAEEMDNASFVASLAPDLREEILLAADDTFLNSLPPDII 1708          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig101.772.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L8R1_9PHAE1.580e-5096.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3W3_ECTSI1.980e-3380.22HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S4HZ14_9STRA1.020e-1948.36Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S1VJ82_9STRA1.990e-1645.76Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
I2CQM8_NANGC2.600e-1643.70E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Nan... [more]
A0A7S2Y5L7_9STRA1.720e-1561.34Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A835YKJ8_9STRA1.690e-1455.46Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TP10_9STRA1.930e-1442.86Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
A0A8K1CG71_PYTOL6.450e-1344.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S4S0Y2_9STRA8.740e-1352.94Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig101contigEcto-sp6_S_contig101:9551..10729 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score134.4
Seed ortholog evalue3.4e-29
Seed eggNOG ortholog2880.D7G3W3
Preferred nameUPL1
Model size357
KEGG koko:K10592
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0005911,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009506,GO:0009987,GO:0016020,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0030054,GO:0032446,GO:0032991,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0055044,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1902494,GO:1990234
Exons3
EggNOG free text desc.ubiquitin protein ligase activity
EggNOG OGsCOG5021@1,KOG0939@2759
EC2.3.2.26
Cds size357
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348728.3384376-CDS-Ecto-sp6_S_contig101:9550..97301682348728.3384376-CDS-Ecto-sp6_S_contig101:9550..9730Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 9551..9730 -
1682348728.3508635-CDS-Ecto-sp6_S_contig101:10205..102981682348728.3508635-CDS-Ecto-sp6_S_contig101:10205..10298Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 10206..10298 -
1682348728.3609002-CDS-Ecto-sp6_S_contig101:10645..107291682348728.3609002-CDS-Ecto-sp6_S_contig101:10645..10729Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 10646..10729 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig101.772.1prot_Ecto-sp6_S_contig101.772.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig101 9551..10729 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig101.772.1

>prot_Ecto-sp6_S_contig101.772.1 ID=prot_Ecto-sp6_S_contig101.772.1|Name=mRNA_Ecto-sp6_S_contig101.772.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=119bp
MDPDVFAQLPPDMQQEVVREHRSTVGSMEDQAELLEAAGLDPEALAALPA
DMRREVLEQEARNRRLREAPGNAGGPADPSRASEMDNASFVATLPPELRR
EVLLSADDALLSTLPPNLV
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mRNA from alignment at Ecto-sp6_S_contig101:9551..10729-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig101.772.1 ID=mRNA_Ecto-sp6_S_contig101.772.1|Name=mRNA_Ecto-sp6_S_contig101.772.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1179bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:9551..10729- (Ectocarpus species6 EcLAC_371)
ATGGACCCCGACGTGTTCGCGCAGCTTCCCCCGGACATGCAGCAGGAGGT GGTGCGGGAGCACCGCAGCACGGTGGGGAGTATGGTGAGAGGGATTGAGA GGGAAAGGGAGAGGGGGGGAGAGAAAGAGAGAGAGCCAGGAAGAGAGGGG GGGAGATAGATAGACAGACAGACAGGCACTGACACAGAGAGAAGATTGTG TGCTTGGGTAGGTAGGTATTAAGGTTGTGCGTGGTGTGGGTAGTGATGTA GGTCTAAGGCTGTACCGTGTCTACGGTCATTATGGTTGGCGTGCTCCGGT CCTGTTTTAGTGTCATGTTTTTTTTCTTGGTTGGCGGGGCTCAACAGGGT CGTATGTCGCGGATTTGGACGTTCTTCTATAGTTGTGTTTTTCTTCGCCC TGTCATGATGGTGTCTTGTTTTGATTTGCAGGAGGACCAAGCCGAGCTCC TGGAAGCTGCCGGGCTTGACCCCGAGGCTCTCGCCGCTTTGCCCGCCGAC ATGAGGCGGGAGGTATTGGAACAGGTGAGCCGCGGGCGCTATGTACTTCG AACTATTTGTTTTCTACGGCAGCATTATTCTTCCCGCCAACCACTCTGTG TTGTTGGTGTTGGTTCGTTCATGCACACACGCACTTGAGAATGGCCAACT GCTGTGTGTTCATTCTTGTTCTTTGGGTGTGTGGAAGACTGGCGTGTTGT CATTGGTCAGCCGGTTAGCGCTGTCGATGCTACCTCAAGAAAACACAAGA CACACACAAGCGCGCGCTCGCGGGCAGATTTTTTTTTTCACTAATATTTT TGGGGGCGGGCTCTCGACCTTCGCATGGTAGGAGTGAGCACGTATTCCTT CTACGCTCACCGTCGTGAAGATTGTTATGACCCAACAAGCGTCCGCGTCA GCTGGAACCACTACGGACACTACTGGAAAGGTTTTCATTGTCAAGACACT GACAACAAAAACTCCCACTGCCGTACGTACCCTTCTCGCTCGCTCGCAGG AGGCCCGCAACCGCCGCCTGAGGGAGGCTCCGGGGAATGCGGGGGGACCG GCGGACCCGTCCCGGGCGTCGGAGATGGACAACGCCTCCTTCGTGGCGAC GCTGCCGCCGGAGCTGCGGCGCGAGGTCCTGCTCAGCGCCGACGACGCGC TGCTCAGCACGCTGCCGCCGAACCTCGTG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig101:9551..10729-

>mRNA_Ecto-sp6_S_contig101.772.1 ID=mRNA_Ecto-sp6_S_contig101.772.1|Name=mRNA_Ecto-sp6_S_contig101.772.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=357bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:9551..10729- (Ectocarpus species6 EcLAC_371)
ATGGACCCCGACGTGTTCGCGCAGCTTCCCCCGGACATGCAGCAGGAGGT
GGTGCGGGAGCACCGCAGCACGGTGGGGAGTATGGAGGACCAAGCCGAGC
TCCTGGAAGCTGCCGGGCTTGACCCCGAGGCTCTCGCCGCTTTGCCCGCC
GACATGAGGCGGGAGGTATTGGAACAGGAGGCCCGCAACCGCCGCCTGAG
GGAGGCTCCGGGGAATGCGGGGGGACCGGCGGACCCGTCCCGGGCGTCGG
AGATGGACAACGCCTCCTTCGTGGCGACGCTGCCGCCGGAGCTGCGGCGC
GAGGTCCTGCTCAGCGCCGACGACGCGCTGCTCAGCACGCTGCCGCCGAA
CCTCGTG
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