mRNA_Ecto-sp6_S_contig101.805.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig101.805.1
Unique NamemRNA_Ecto-sp6_S_contig101.805.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig101.805.1 vs. uniprot
Match: A0A6H5KKL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKL9_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 4.030e-24
Identity = 73/109 (66.97%), Postives = 81/109 (74.31%), Query Frame = -3 
Query:  121 ALAGEGRDSDNNGSAGDGTNNGSAHPTDADTHTXXXXXXXXXXXXDFAQDILRNRAEAASQQSTSLLVSGSPIEAVFVGETPKAVDTEKAPPAWVLNMTMPGAAHQPDI 447
            AL G+GRDSDNN SA DG   G     D D   XXXXXXXXXXXXD A DIL+NRA+AASQQS  L+ SG P+EAV V    KAV+TEKAPPAWVL+M MPGAAHQ +I
Sbjct:  103 ALVGDGRDSDNNSSASDGAKAG-IQTLDTDPXXXXXXXXXXXXXXDLAHDILQNRADAASQQSAPLVASGGPLEAVLVSAVTKAVETEKAPPAWVLSMLMPGAAHQQNI 210
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BLAST of mRNA_Ecto-sp6_S_contig101.805.1 vs. uniprot
Match: A0A6H5JZR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZR8_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 1.000e-23
Identity = 69/110 (62.73%), Postives = 77/110 (70.00%), Query Frame = -3 
Query:  121 ALAGEGRDSDNNGSA-GDGTNNGSAHPTDADTHTXXXXXXXXXXXXDFAQDILRNRAEAASQQSTSLLVSGSPIEAVFVGETPKAVDTEKAPPAWVLNMTMPGAAHQPDI 447
            AL G+GRDSDNN S+ GDG   GS    D    T     XXXXXX   A+DIL+NRA+AASQQS SLL SG P+EAV VG   KAV+ EK PPAWVL+M MPGAAHQ DI
Sbjct:   86 ALVGDGRDSDNNSSSVGDGAKAGSTQTLD----TEPLPDXXXXXXDHLARDILQNRADAASQQSASLLASGGPLEAVLVGTVTKAVEAEKDPPAWVLSMLMPGAAHQQDI 191
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BLAST of mRNA_Ecto-sp6_S_contig101.805.1 vs. uniprot
Match: A0A6H5JXG3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXG3_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 7.810e-23
Identity = 75/133 (56.39%), Postives = 88/133 (66.17%), Query Frame = -3 
Query:   49 ALAGEGRDSDNNGSAGDGTNNGSAHPTDADTHTXXXXXXXXXXXXDFAQDILRNRAEAASQQSTSLLVSGSPIEAVFVGETPKAVDTEKAPPAWVLNMTMPGAAHQPDIPQVNRRSLAHDLDRKSCVVRSPFS 447
            AL G+GRDSDNN SA  G   G     D D   XXXXXXXXXXXX  A DIL NRA+AASQQS +LL SG P+EAV V    KAV+ EKAPPAWVL+M +PGAAHQ DI ++  +S A D   +   + +  S
Sbjct:  102 ALVGDGRDSDNNSSASHGAKAGKIQTLDTDPXXXXXXXXXXXXXXXLAHDILHNRADAASQQSAALLASGGPLEAVLVSAVSKAVEAEKAPPAWVLSMLIPGAAHQQDIQKL--QSTADDNKNRITAIENYIS 232
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BLAST of mRNA_Ecto-sp6_S_contig101.805.1 vs. uniprot
Match: A0A6H5KWD8_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWD8_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 2.790e-22
Identity = 61/109 (55.96%), Postives = 68/109 (62.39%), Query Frame = -3 
Query:  121 ALAGEGRDSDNNGSAGDGTNNGSAHPTDADTHTXXXXXXXXXXXXDFAQDILRNRAEAASQQSTSLLVSGSPIEAVFVGETPKAVDTEKAPPAWVLNMTMPGAAHQPDI 447
            AL GEGRDSDNN S  DG   G+      DT              D A  IL+NRA+AASQQS+ LL SG P+EAV V    KAV+ EKAPPAWVL+M MPGAAHQ DI
Sbjct:   86 ALVGEGRDSDNNSSTSDGAEAGNL-----DTDPTPEGDDDDNVDDDLAHYILQNRADAASQQSSPLLASGGPLEAVLVSAVSKAVEAEKAPPAWVLSMLMPGAAHQQDI 189
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BLAST of mRNA_Ecto-sp6_S_contig101.805.1 vs. uniprot
Match: A0A6H5KSY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY0_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 2.150e-21
Identity = 69/109 (63.30%), Postives = 76/109 (69.72%), Query Frame = -3 
Query:  121 ALAGEGRDSDNNGSAGDGTNNGSAHPTDADTHTXXXXXXXXXXXXDFAQDILRNRAEAASQQSTSLLVSGSPIEAVFVGETPKAVDTEKAPPAWVLNMTMPGAAHQPDI 447
            AL G+GRDSDNN SA DG   G+    D D   XXXXXXXXX   D A DIL+NRA+AASQQS  LL SG P+EAV V    KAV+ EKAPPAWVL+M M GAA Q DI
Sbjct:   86 ALVGDGRDSDNNSSASDGVKAGT-ETLDTDPXXXXXXXXXXXVDDDLAHDILQNRADAASQQSAPLLASGGPLEAVLVSAVTKAVEAEKAPPAWVLSMLMTGAADQQDI 193
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BLAST of mRNA_Ecto-sp6_S_contig101.805.1 vs. uniprot
Match: A0A6H5L3Z0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Z0_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 2.930e-21
Identity = 68/109 (62.39%), Postives = 75/109 (68.81%), Query Frame = -3 
Query:  121 ALAGEGRDSDNNGSAGDGTNNGSAHPTDADTHTXXXXXXXXXXXXDFAQDILRNRAEAASQQSTSLLVSGSPIEAVFVGETPKAVDTEKAPPAWVLNMTMPGAAHQPDI 447
            AL G+ RDSDNN SA DG   G+    D D   XXXXXXXX    D A DIL+NRA+AASQQS  LL SG P+EAV V    KAV+  KAPPAWVL+M MPGAAHQ DI
Sbjct:  154 ALVGDDRDSDNNSSARDGAKAGT-QTLDTDPSPXXXXXXXXNADDDLAHDILQNRADAASQQSAPLLASGGPLEAVLVSAVSKAVEAAKAPPAWVLSMLMPGAAHQEDI 261
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BLAST of mRNA_Ecto-sp6_S_contig101.805.1 vs. uniprot
Match: A0A6H5L1K1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1K1_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 5.460e-17
Identity = 68/109 (62.39%), Postives = 74/109 (67.89%), Query Frame = -3 
Query:  121 ALAGEGRDSDNNGSAGDGTNNGSAHPTDADTHTXXXXXXXXXXXXDFAQDILRNRAEAASQQSTSLLVSGSPIEAVFVGETPKAVDTEKAPPAWVLNMTMPGAAHQPDI 447
            AL G GRDSD       G   G+    D     XXXXXXXXXXXXD A DIL+NRA+AASQQS  LL SG P+EAV V    KAV+ EKAPPAWVL+M MPGAAHQ DI
Sbjct:   86 ALVGGGRDSDXXXXXXXGAKAGTL---DTXXXXXXXXXXXXXXXXDLAHDILQNRADAASQQSAPLLSSGGPLEAVLVSAVSKAVEAEKAPPAWVLSMLMPGAAHQLDI 191
[Close]
BLAST of mRNA_Ecto-sp6_S_contig101.805.1 vs. uniprot
Match: A0A6H5JYG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYG2_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 4.370e-12
Identity = 53/102 (51.96%), Postives = 61/102 (59.80%), Query Frame = -3 
Query:  142 ALAGEGRDSDNNGSAGDGTNNGSAHPTDADTHTXXXXXXXXXXXXDFAQDILRNRAEAASQQSTSLLVSGSPIEAVFVGETPKAVDTEKAPPAWVLNMTMPG 447
            AL GEGRDSDNN S  D      A   + DT      XXXX    D A DIL+NRA+AASQQS+ LL SG P+EAV V    KAV+ EKAP    + +T PG
Sbjct:   18 ALVGEGRDSDNNSSTRD-----DAEAGNLDTDPTPEDXXXXNVDDDLAHDILQNRADAASQQSSPLLASGGPLEAVLVSAVSKAVEAEKAPAG--MGLTEPG 112
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig101.805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KKL9_9PHAE4.030e-2466.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZR8_9PHAE1.000e-2362.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXG3_9PHAE7.810e-2356.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KWD8_9PHAE2.790e-2255.96Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSY0_9PHAE2.150e-2163.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3Z0_9PHAE2.930e-2162.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1K1_9PHAE5.460e-1762.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYG2_9PHAE4.370e-1251.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig101contigEcto-sp6_S_contig101:372850..374573 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size887
Hectar predicted targeting categoryother localisation
Exons2
Cds size558
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348728.2860577-UTR-Ecto-sp6_S_contig101:372849..3730111682348728.2860577-UTR-Ecto-sp6_S_contig101:372849..373011Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig101 372850..373011 -
1682348728.3013804-UTR-Ecto-sp6_S_contig101:373569..3736491682348728.3013804-UTR-Ecto-sp6_S_contig101:373569..373649Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig101 373570..373649 -
1682348728.308559-UTR-Ecto-sp6_S_contig101:374486..3745731682348728.308559-UTR-Ecto-sp6_S_contig101:374486..374573Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig101 374487..374573 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348728.2940614-CDS-Ecto-sp6_S_contig101:373011..3735691682348728.2940614-CDS-Ecto-sp6_S_contig101:373011..373569Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 373012..373569 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig101.805.1prot_Ecto-sp6_S_contig101.805.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig101 373012..373569 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig101.805.1

>prot_Ecto-sp6_S_contig101.805.1 ID=prot_Ecto-sp6_S_contig101.805.1|Name=mRNA_Ecto-sp6_S_contig101.805.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=186bp
MLAGPSPYRLPSGSRRRRRPQSGCRSPGVTCSAGWRLQRGSAGCPARSRR
RRRRCDRRRGRCVCPRRWGERYRCWCRRQRCRCYRCRDPHRPVQDSPWLL
LCGVATLAAAPAASPGCFGFGCPVLGLSRGFCGGRSSIGARLLRLLRLLL
RLLRCCILLVFPMFCTRIVKRKRFVERQYEALYSG*
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mRNA from alignment at Ecto-sp6_S_contig101:372850..374573-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig101.805.1 ID=mRNA_Ecto-sp6_S_contig101.805.1|Name=mRNA_Ecto-sp6_S_contig101.805.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1724bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:372850..374573- (Ectocarpus species6 EcLAC_371)
GTGCGTCGTCGTTCCGTGGTTCCCCACCACGCACACTGCGCATAGTGGGG
AAAATGGACTGCGCACAACGCACGACTTTCTATCCAGGTGCATGTATGGT
GCATGTATTGTTTCGCTACACGATCATGCACTGAAAGTGGTAAGGGTTTC
GCTGCCGTGTCGAAGACCTGCTGGTACGCATCCATCCGTACGACGTCTCT
AACTGATTCGGTTGAATCACTTACAACAGCAATGCAAGATCGGTCACCAC
GAAGAACGTCTTGTTTCGCCCCGAGACTCAGTCTCTTTTAGACTAGACTT
TGGCTGGAGAGGGCGTCGGGCAATACGTCGGATTGAAGTTGTTCATTTTA
GATTTGATCTGTTTCAAATTCTTGCGACAGACTGCTGTGGAGGTCAGGAT
ATGGAGATTCAGGGAGCACAGACACACGTACATAGTATCGTGGGGGGATG
TGTGATAATCGATCCCTCTGTTCTTCTGAATGGTCCATGACTCTTGCTAT
TCCCAACAGCTGCGAATGGTTGATGAATCCTTAGGAGGATGGGAAAATGA
GTCCACGAAGGCTCCACACGGTAAACCAGGACGTGAGTAGCACGGCGAGA
TATACTTTGAAAGCCACTGACCTGCCTCCTGATCTCAAGCTCGAGGGTCT
GCCTCATCAAGATGTTCCTGAAAACATGGCACTTTACAGGGCACACATCG
GTCTGTTCTCTGCAGACAACGTATCTCAAAGCACGGGTTACCGGGGTAGG
GTTGTCCTGGTTTACCGTTTACTGGTTTACCTTGGTTCGTTGAGGCCTGG
TTTATCGTGTTGTGGTGTACCGGGTTCTTGATGCGTAAAACTGTCGAGGT
AGAGACGCACTCTGAGCCGGGGTCTGTTGAACACTTGCTGTTGTGTGCAT
ACCAAAACTATTTTCTGCTGCTAGATCATGGGCAAGCGAACGCCGATTCA
CCTGCGGGATATCCGGCTGGTGAGCGGCTCCCGGCATGGTCATGTTGAGG
ACCCATGCTGGCGGGGCCTTCTCCGTATCGACTGCCTTCGGGGTCTCGCC
GACGAAGACGGCCTCAATCGGGCTGCCGCTCACCAGGAGTGACGTGCTCT
GCTGGCTGGCGGCTTCAGCGCGGTTCCGCAGGATGTCCTGCGCGAAGTCG
TCGCCGTCGTCGTCGTTGCGATCGGCGTCGCGGTCGGTGTGTGTGTCCGC
GTCGGTGGGGTGAGCGCTACCGTTGTTGGTGCCGTCGCCAGCGCTGCCGT
TGTTATCGCTGTCGCGACCCTCACCGGCCAGTGCAGGATTCGCCGTGGCT
ACTGCTCTGCGGGGTTGCTACGCTCGCGGCAGCGCCGGCGGCTTCTCCAG
GTTGCTTCGGTTTCGGCTGTCCCGTTCTGGGGCTTAGCCGCGGGTTTTGC
GGTGGGCGCAGCAGCATCGGGGCGCGGCTGCTTCGGCTGCTTCGGCTGCT
GCTGCGGCTGTTGCGGTGCTGCATTCTTCTTGTATTCCCCATGTTTTGTA
CGAGGATTGTAAAGAGGAAACGCTTCGTCGAGCGCCAATATGAAGCCCTC
TACTCTGGGTGAGCGGAGAGTCCGGAGTGTGGTGGCTATGACCTGCCACC
GGAGGCTGGCTATTTCCTTTGGTGCGATGTGGCGAGGAATGCCACGCGTG
ACCGAGCGAACTCAGTCCAGCTATCGGGTGGTGCAGAGTGTCTCAAATTC
GAAGCAAATATTGTTGATTTCAAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig101:372850..374573-

>mRNA_Ecto-sp6_S_contig101.805.1 ID=mRNA_Ecto-sp6_S_contig101.805.1|Name=mRNA_Ecto-sp6_S_contig101.805.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=558bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:372850..374573- (Ectocarpus species6 EcLAC_371)
ATGCTGGCGGGGCCTTCTCCGTATCGACTGCCTTCGGGGTCTCGCCGACG
AAGACGGCCTCAATCGGGCTGCCGCTCACCAGGAGTGACGTGCTCTGCTG
GCTGGCGGCTTCAGCGCGGTTCCGCAGGATGTCCTGCGCGAAGTCGTCGC
CGTCGTCGTCGTTGCGATCGGCGTCGCGGTCGGTGTGTGTGTCCGCGTCG
GTGGGGTGAGCGCTACCGTTGTTGGTGCCGTCGCCAGCGCTGCCGTTGTT
ATCGCTGTCGCGACCCTCACCGGCCAGTGCAGGATTCGCCGTGGCTACTG
CTCTGCGGGGTTGCTACGCTCGCGGCAGCGCCGGCGGCTTCTCCAGGTTG
CTTCGGTTTCGGCTGTCCCGTTCTGGGGCTTAGCCGCGGGTTTTGCGGTG
GGCGCAGCAGCATCGGGGCGCGGCTGCTTCGGCTGCTTCGGCTGCTGCTG
CGGCTGTTGCGGTGCTGCATTCTTCTTGTATTCCCCATGTTTTGTACGAG
GATTGTAAAGAGGAAACGCTTCGTCGAGCGCCAATATGAAGCCCTCTACT
CTGGGTGA
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