mRNA_Ecto-sp6_S_contig101.773.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig101.773.1
Unique NamemRNA_Ecto-sp6_S_contig101.773.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig101.773.1 vs. uniprot
Match: A0A6H5L8R1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8R1_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 4.620e-10
Identity = 37/42 (88.10%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:  124 AGSPNTPSDGVVGAPGGGGDTGGDAGAARDNVAAMVESAMES 249
            AGS NTPSDG VG  GGGGD GGDAGAARDNVAAMVESAMES
Sbjct:  183 AGSANTPSDGAVGTRGGGGDIGGDAGAARDNVAAMVESAMES 224
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig101.773.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L8R1_9PHAE4.620e-1088.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig101contigEcto-sp6_S_contig101:12137..13362 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size266
Hectar predicted targeting categoryother localisation
Exons2
Cds size264
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348728.2439578-CDS-Ecto-sp6_S_contig101:12136..123611682348728.2439578-CDS-Ecto-sp6_S_contig101:12136..12361Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 12137..12361 -
1682348728.253606-CDS-Ecto-sp6_S_contig101:13323..133621682348728.253606-CDS-Ecto-sp6_S_contig101:13323..13362Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig101 13324..13362 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig101.773.1prot_Ecto-sp6_S_contig101.773.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig101 12137..13362 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig101.773.1

>prot_Ecto-sp6_S_contig101.773.1 ID=prot_Ecto-sp6_S_contig101.773.1|Name=mRNA_Ecto-sp6_S_contig101.773.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=88bp
RPGAGAGAGGPREEEKQSAEGQAVASASETSTDSGGGATAAAGSPNTPSD
GVVGAPGGGGDTGGDAGAARDNVAAMVESAMESVAAAE
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mRNA from alignment at Ecto-sp6_S_contig101:12137..13362-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig101.773.1 ID=mRNA_Ecto-sp6_S_contig101.773.1|Name=mRNA_Ecto-sp6_S_contig101.773.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1226bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:12137..13362- (Ectocarpus species6 EcLAC_371)
CGGCCGGGGGCGGGAGCGGGAGCTGGTGGGCCTAGAGAGGTAAAATTGGG
GGGGTCTCAGTGTAGTTGGCGTTGGTTTGTGTCGTCGTTTTGTTCATGTG
TACAATGGTTCATGCTTGTACTTGGAAGTATTGTATATACGTGTTGCATG
GGTGAGAGTGTCGGTCGTTTTTGTGACGACTGCTGCTGTTGTTGGTTTGT
TTTGCTGTTTTGGTTTTGAGATCGTGTGTACGGGTGTCCTTTGCTCGTGG
TGCTTGTGGTACGCACACGCAGCACAGCACAGCACTCGGTCGGTCGGACC
GGACCGGACCGCTTCTTCCCAGGCGTGCGCTGGCGGTGGACATTCTTGTC
TGTATGTGTGTCGATAGTGTTTGGTAAGGGGCAAGAAATCCCCCACGTCC
TCCCCCGAGAGATGCCACGTGTGTGATTGTTCTCACTGTCTGCGGACACC
GGTAAAACCATTCATTCCCCGCGCGGTTTACATGGGTTGTGATGCATCGG
TTTGAGACTCCCCCCATGTTCCGTGCCTCCAGTAAACTATTGAGTTCCCC
GCGCCCTTTGCCGAGGTCGCCGTGCATCGGTTGAGACGTTGTTGAGACTC
ACTCCCCCCGCCCGTTCCCGCGGAGCACTAGTCTACCGCAGTTGATGAAA
GATTCCACACACCCTGGACCTTTTTTTCAAAGCTCGACTACTCCATGATG
AACATGATGCATGGATCAACGACAAGTTTTCGGAATACTCTCGACGAGAC
GGCTTCAACGCCGCCATTTTCGTCGCCGCCACTCCTTGTGCTGTTGAGAA
ATCGAGCTTTGAAACTCGGTCCAGGGTGTGTGATATCTTATGTCACGTAC
GGTATCAGCTTCCGAGTTGACCGAAAAGACCCTTCGCGCCCCTTCTGGGC
TGTGCGTCCCCGTCCCCTCCCAACACCTTGCCGGCACGAATCCAACCAAG
CCAACCCTACGGCACAACCCCCCTCCCGGGCGCTGCTTCTTCGCGAGCCA
GGAGGAAAAGCAAAGCGCGGAAGGTCAGGCGGTGGCTTCGGCCTCGGAGA
CCAGCACCGACTCCGGCGGCGGCGCAACGGCGGCGGCGGGCAGCCCAAAC
ACGCCTTCCGATGGCGTAGTCGGTGCTCCCGGCGGGGGCGGTGACACGGG
AGGAGACGCGGGGGCCGCTCGTGACAACGTGGCGGCGATGGTGGAGAGCG
CGATGGAGTCGGTGGCGGCGGCGGAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig101:12137..13362-

>mRNA_Ecto-sp6_S_contig101.773.1 ID=mRNA_Ecto-sp6_S_contig101.773.1|Name=mRNA_Ecto-sp6_S_contig101.773.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=264bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:12137..13362- (Ectocarpus species6 EcLAC_371)
CGGCCGGGGGCGGGAGCGGGAGCTGGTGGGCCTAGAGAGGAGGAAAAGCA
AAGCGCGGAAGGTCAGGCGGTGGCTTCGGCCTCGGAGACCAGCACCGACT
CCGGCGGCGGCGCAACGGCGGCGGCGGGCAGCCCAAACACGCCTTCCGAT
GGCGTAGTCGGTGCTCCCGGCGGGGGCGGTGACACGGGAGGAGACGCGGG
GGCCGCTCGTGACAACGTGGCGGCGATGGTGGAGAGCGCGATGGAGTCGG
TGGCGGCGGCGGAG
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