Homology
BLAST of mRNA_Ecto-sp6_S_contig101.771.1 vs. uniprot
Match:
D7G3W3_ECTSI (HECT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3W3_ECTSI)
HSP 1 Score: 174 bits (440), Expect = 2.420e-48
Identity = 93/96 (96.88%), Postives = 93/96 (96.88%), Query Frame = 2
Query: 2 ARGSSGAQTGSRGGGATNVASAAQAIGAARQALRNTHEGEWKLEADLKGSDTTPPQVPRETVVMLIRLLHLLTPIRPHRLLQRTVLNLCAGHPLVR 289
ARGSSGAQTGS GATNVASAAQAIGAARQALRNTHEGEWKLEADLKGSDTTPPQVPRETVVMLIRLLHLLTPIRPHRLLQRTVLNLCAGHPLVR
Sbjct: 744 ARGSSGAQTGSXXXGATNVASAAQAIGAARQALRNTHEGEWKLEADLKGSDTTPPQVPRETVVMLIRLLHLLTPIRPHRLLQRTVLNLCAGHPLVR 839
BLAST of mRNA_Ecto-sp6_S_contig101.771.1 vs. uniprot
Match:
A0A6H5L8R1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8R1_9PHAE)
HSP 1 Score: 152 bits (383), Expect = 9.280e-41
Identity = 88/111 (79.28%), Postives = 88/111 (79.28%), Query Frame = 2
Query: 2 ARGSSGAQTGSRGGGATNVASAAQAIG---------------AARQALRNTHEGEWKLEADLKGSDTTPPQVPRETVVMLIRLLHLLTPIRPHRLLQRTVLNLCAGHPLVR 289
ARGSSGAQT TNVASAAQAIG AARQALRNTHEGEWKLEAD KGSDTTPPQVPRETVVMLIRLLHLLTPIRPHRLLQRTVLNLCAGHPLVR
Sbjct: 679 ARGSSGAQTXXXXXXXTNVASAAQAIGGWPCVENCCVCKYIGAARQALRNTHEGEWKLEADPKGSDTTPPQVPRETVVMLIRLLHLLTPIRPHRLLQRTVLNLCAGHPLVR 789
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig101.771.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 2.42e-48 / Id = 96.88 Expect = 9.28e-41 / Id = 79.28 Sequence D7G3W3_ECTSI A0A6H5L8R1_9PHAE
Match Name E-value Identity Description
D7G3W3_ECTSI 2.420e-48 96.88 HECT domain-containing protein n=1 Tax=Ectocarpus ... [more] A0A6H5L8R1_9PHAE 9.280e-41 79.28 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 0 Model size 301 Hectar predicted targeting category other localisation Exons 3 Cds size 300
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1682348728.1947608-CDS-Ecto-sp6_S_contig101:8159..8290 1682348728.1947608-CDS-Ecto-sp6_S_contig101:8159..8290 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig101 8160..8290 - 1682348728.2047555-CDS-Ecto-sp6_S_contig101:8750..8839 1682348728.2047555-CDS-Ecto-sp6_S_contig101:8750..8839 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig101 8751..8839 - 1682348728.2146728-CDS-Ecto-sp6_S_contig101:8997..9077 1682348728.2146728-CDS-Ecto-sp6_S_contig101:8997..9077 Ectocarpus species6 EcLAC_371 CDS Ecto-sp6_S_contig101 8998..9077 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig101.771.1
>prot_Ecto-sp6_S_contig101.771.1 ID=prot_Ecto-sp6_S_contig101.771.1|Name=mRNA_Ecto-sp6_S_contig101.771.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=100bp
GPGLVRRSDREQGRRRHERCIGGASDRRGSPGSEEHARGRVEAGGGPQGL back to top mRNA from alignment at Ecto-sp6_S_contig101:8160..9077-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig101.771.1 ID=mRNA_Ecto-sp6_S_contig101.771.1|Name=mRNA_Ecto-sp6_S_contig101.771.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=918bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:8160..9077- (Ectocarpus species6 EcLAC_371)GGCCCGGGGCTCGTCAGGCGCTCAGACCGGGAGCAGGGGAGGCGGCGCCA
CGAACGTTGCATCGGCGGCGCAAGCGATAG GTAGGCGATACAACCATGAG
TTTTAATGCCTAGGGCGGTGGTACGAGTTCTTGCGTACGGTGGTGATAAA
ATTGCCGTGTTCCTCGTAATCGTTAGGTTGCATCGACGGCGCTAACCCGC
TGTGCATTGAAAAAACTGCTGTGCGTGCAAATAAATAGGCGCGGCTCGCC
AGGCTCTGAGGAACACGCACGAGGGAGAGTGGAAGCTGGAGGCGGACCTC
AAGGGCTCCGACACGACGCCTCCTCAG GTTTGTGTGAGGGAGGGGTTGTA
GTGATAGCCGTGCATGCCGTAGGGGGTTGCGGGGGGAGGGGGCAACGGAA
ATGCAAAAAACGATATTTGTGTATAATACAAGTGTGTATAATCGAGCAGA
GAATTAGGGTGCCCTTGATCTTGCCCTACCGATTTTCGTGGGTCCAGGCT
TTGTTTCGCAAGGAGTTAACCGGAATGTGGTCATCATCCTTGCGATTGGT
GTGCCACGCCGAATATGCCATGGGTTGGTTGGACGTCCCGGCTAACCAAA
CGTTTCACGTTCGGTAGGAACGACTACATACCTACCATTTTGTTGTGTAT
TGGTACTCTGTCGGGCGTATGCTTTCGGCTGGTACTGTTATGCCTTCGGC
TACTACTGTTAAGTCTCGGTGCACTGCGCTGCTGTCTCTCTCCATCCTCT
TGTCGGCTGCCGTCTTCTGTCATTTTCCTGTCCGCAGGTGCCCCGCGAGA
CGGTGGTGATGTTGATCCGCCTGCTGCACCTCCTGACGCCGATCAGACCC
CACCGACTCCTACAGCGTACGGTGCTCAACCTATGCGCCGGGCACCCGCT
CGTCAGGTGACTTTTTGA back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig101:8160..9077-
>mRNA_Ecto-sp6_S_contig101.771.1 ID=mRNA_Ecto-sp6_S_contig101.771.1|Name=mRNA_Ecto-sp6_S_contig101.771.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:8160..9077- (Ectocarpus species6 EcLAC_371) back to top