mRNA_Ecto-sp6_S_contig101.770.1 (mRNA) Ectocarpus species6 EcLAC_371
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Overview
Homology
BLAST of mRNA_Ecto-sp6_S_contig101.770.1 vs. uniprot
Match: A0A6H5K1Z7_9PHAE (HECT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1Z7_9PHAE) HSP 1 Score: 227 bits (579), Expect = 1.290e-64 Identity = 144/163 (88.34%), Postives = 145/163 (88.96%), Query Frame = 1
Query: 100 RPAGXXAATATWEKYEWVKVPAPVVQHERLRLLCSVLRLEACSDNSFQRVGTVVSNLSKVPENRMTLLKELVSVAKSLGAVSTHDLQSLEQQLDVAKRDAMARQAAAQXXXXXXXXXXXXXDAPMTSPAVKGKGKAPAHEGSGGGRPGARRNPSCGGQPQLVV 588
RPAG AATAT EKYEWVKVPAPVVQHERLRLLCSVLRLEACSDNSFQRVGTVVSNLSKVPENRM LLKELVSVAKSLGAVSTHDLQSLEQQLDVAKRDAMAR AAAQXXXXXXXXXXXXX APMT P VKGKGKAPAHEGSGGGR G R G P +VV
Sbjct: 296 RPAGAGAATATSEKYEWVKVPAPVVQHERLRLLCSVLRLEACSDNSFQRVGTVVSNLSKVPENRMILLKELVSVAKSLGAVSTHDLQSLEQQLDVAKRDAMAR-AAAQXXXXXXXXXXXXX-APMTLPVVKGKGKAPAHEGSGGGRSGGRA-----GIPPVVV 451
BLAST of mRNA_Ecto-sp6_S_contig101.770.1 vs. uniprot
Match: D7FHV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHV8_ECTSI) HSP 1 Score: 144 bits (364), Expect = 3.370e-39 Identity = 111/192 (57.81%), Postives = 113/192 (58.85%), Query Frame = 1
Query: 13 VEEESKMEVDSPXXXXXXXXXXXXXXXXXRPAGXXAATATWEKYEWVKVPAPVVQHERLRLLCSVLRLEACSDNSFQRVGTVVSNLSKVPENRMTLLKELVSVAKSLGAVSTHDLQSLEQQLDVAKRDAMARQAAAQXXXXXXXXXXXXXDAPMTSPAVKGKGKAPAHEGSGGGRPGARRNPSCGGQPQLVV 588
+EEESKMEVDSPXXXXXXXXXXXXXXXXXRPAG AATATWEKYEWVKVPAPVVQHERLRLLCSVLRLEACSDNSFQ QAAAQ DAPMTSPAVKGKGKAPAHEGSGGGRPG R G P +VV
Sbjct: 54 IEEESKMEVDSPXXXXXXXXXXXXXXXXXRPAGAGAATATWEKYEWVKVPAPVVQHERLRLLCSVLRLEACSDNSFQ-------------------------------------------------------QAAAQAKQDEGEEAAEEEDAPMTSPAVKGKGKAPAHEGSGGGRPGGRA-----GIPPVVV 185
BLAST of mRNA_Ecto-sp6_S_contig101.770.1 vs. uniprot
Match: A0A7S1Z2K3_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z2K3_TRICV) HSP 1 Score: 80.5 bits (197), Expect = 6.950e-14 Identity = 42/81 (51.85%), Postives = 55/81 (67.90%), Query Frame = 1
Query: 145 EWVKVPAPVVQHERLRLLCSVLRLEACSDNSFQRVGTVVSNLSKVPENRMTLLKELVSVAKSLGAVSTHDLQSLEQQLDVA 387
E+V VP P+V RLRLLCS+LRLE+C D SF +V T+ L +V NR +L+EL SVA+ LGA + DL+SL +L A
Sbjct: 242 EYVDVPRPLVSPHRLRLLCSLLRLESCRDTSFVKVNTIARRLCRVEANRTCILRELASVAQGLGADAIRDLRSLSIRLSDA 322
BLAST of mRNA_Ecto-sp6_S_contig101.770.1 vs. uniprot
Match: A0A7S1VJ82_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VJ82_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 2.960e-12 Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = 1
Query: 145 EWVKVPAPVVQHERLRLLCSVLRLEACSDNSFQRVGTVVSNLSKVPENRMTLLKELVSVAKSLGAVSTHDLQSLEQQLD 381
E++ VP V+ +RLRLLCSVL+LE+C D++F +V T+V LS+V NR +L EL +VA +LGA + +L++L+ ++D
Sbjct: 2193 EYIGVPRVVISQDRLRLLCSVLKLESCKDSAFTKVNTIVKRLSRVDANRGFILSELGTVAHALGADAIRELRALKIRMD 2271
BLAST of mRNA_Ecto-sp6_S_contig101.770.1 vs. uniprot
Match: A0A7S2QUU6_9STRA (Hypothetical protein n=2 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QUU6_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 1.250e-11 Identity = 39/74 (52.70%), Postives = 55/74 (74.32%), Query Frame = 1
Query: 145 EWVKVPAPVVQHERLRLLCSVLRLEACSDNSFQRVGTVVSNLSKVPENRMTLLKELVSVAKSLGAVSTHDLQSL 366
++VK P VV RLRLLC+VLR E C D+SF +V +++S LSKV NR+TL++EL SVA++L + +T DL +L
Sbjct: 660 KYVKTPRTVVAARRLRLLCAVLREEVCKDDSFSKVLSIMSALSKVKANRITLVEELGSVAQNLSSDATTDLATL 733
BLAST of mRNA_Ecto-sp6_S_contig101.770.1 vs. uniprot
Match: B7G082_PHATC (HECT-type E3 ubiquitin transferase (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G082_PHATC) HSP 1 Score: 72.4 bits (176), Expect = 8.230e-11 Identity = 36/80 (45.00%), Postives = 51/80 (63.75%), Query Frame = 1
Query: 148 WVKVPAPVVQHERLRLLCSVLRLEACSDNSFQRVGTVVSNLSKVPENRMTLLKELVSVAKSLGAVSTHDLQSLEQQLDVA 387
WV+ P + ERL+ LCS+LR+E DN+F +V T+V L +V NR +L EL VA SL + S HDL++L ++D A
Sbjct: 3600 WVQAPGIEISPERLKRLCSILRMETFRDNAFSKVNTIVRRLCRVESNRGLVLAELAGVAHSLASDSIHDLRALRIRIDEA 3679
BLAST of mRNA_Ecto-sp6_S_contig101.770.1 vs. uniprot
Match: A0A7S2W4E8_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W4E8_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 3.580e-6 Identity = 36/77 (46.75%), Postives = 51/77 (66.23%), Query Frame = 2
Query: 548 AGIPPVVVNLNSSSSELKLLRVLQTLVNLSGKDTEMLEK-------------LLRALDLDGLWDALSSCLTVVSVLE 739
+G P V L++SSSELKLLRVLQTL +L G +++ +K LL+++DL+ LW+ L++CL VVSVLE
Sbjct: 1238 SGTPSSAVTLSTSSSELKLLRVLQTLHSLCGSNSDDNKKSEGGAIVSQELVSLLQSIDLESLWEQLNACLRVVSVLE 1314
BLAST of mRNA_Ecto-sp6_S_contig101.770.1 vs. uniprot
Match: A0A7S4JHL0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JHL0_9STRA) HSP 1 Score: 55.1 bits (131), Expect = 4.740e-5 Identity = 41/98 (41.84%), Postives = 53/98 (54.08%), Query Frame = 2
Query: 506 RPHMKVAAVAGRGRAGIPP-----VVVNLNSSSSELKLLRVLQTLVNLSGK---------------DTEMLEKLLRALDLDGLWDALSSCLTVVSVLE 739
R + A +G G+A P V L++SSSE+KLLRVLQTL L G+ T+ L LL ++DL LWD L+SCL +VSVLE
Sbjct: 393 REKLTAAEASGDGKARSPEEGRASTAVTLSTSSSEIKLLRVLQTLHVLCGELHDDTAKKHEGNHIFITQELVDLLHSIDLQSLWDQLTSCLRLVSVLE 490 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig101.770.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig101.770.1 >prot_Ecto-sp6_S_contig101.770.1 ID=prot_Ecto-sp6_S_contig101.770.1|Name=mRNA_Ecto-sp6_S_contig101.770.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=200bp MEVDSPPPPAAAATAAATAAAAGRPAGAGAATATWEKYEWVKVPAPVVQHback to top mRNA from alignment at Ecto-sp6_S_contig101:677..3708- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp6_S_contig101.770.1 ID=mRNA_Ecto-sp6_S_contig101.770.1|Name=mRNA_Ecto-sp6_S_contig101.770.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3032bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:677..3708- (Ectocarpus species6 EcLAC_371)back to top Coding sequence (CDS) from alignment at Ecto-sp6_S_contig101:677..3708- >mRNA_Ecto-sp6_S_contig101.770.1 ID=mRNA_Ecto-sp6_S_contig101.770.1|Name=mRNA_Ecto-sp6_S_contig101.770.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=600bp|location=Sequence derived from alignment at Ecto-sp6_S_contig101:677..3708- (Ectocarpus species6 EcLAC_371)back to top |