mRNA_Ecto-sp6_S_contig100.769.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig100.769.1
Unique NamemRNA_Ecto-sp6_S_contig100.769.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig100.769.1 vs. uniprot
Match: D8LF53_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF53_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 1.350e-57
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1
Query:    1 VGAAMISFIKAYKKELSPLIPPACRFLPTCSVYGVQAIEKFGPTKGAVLTAWRLMRCNPFAGYGVDYPQWPPPGWFAGERW 243
            VGAAMISFIKAYKKELSPLIPPACRFLPTCSVYGVQAIEKFGPTKGAVLTAWRLMRCNPFAGYGVDYPQWPPPGWFAGERW
Sbjct:   75 VGAAMISFIKAYKKELSPLIPPACRFLPTCSVYGVQAIEKFGPTKGAVLTAWRLMRCNPFAGYGVDYPQWPPPGWFAGERW 155          
BLAST of mRNA_Ecto-sp6_S_contig100.769.1 vs. uniprot
Match: A0A835ZNH9_9STRA (Hemolytic domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZNH9_9STRA)

HSP 1 Score: 133 bits (335), Expect = 2.140e-38
Identity = 56/78 (71.79%), Postives = 65/78 (83.33%), Query Frame = 1
Query:    1 VGAAMISFIKAYKKELSPLIPPACRFLPTCSVYGVQAIEKFGPTKGAVLTAWRLMRCNPFAGYGVDYPQWPPPGWFAG 234
            + AAMI FIKAYK+E+SPL+PPACRF PTCSVY V++IE+FG  +G VLTAWRL+RC P  GYG D PQWPPP WFAG
Sbjct:   64 IKAAMIGFIKAYKREISPLLPPACRFFPTCSVYAVESIEEFGAWRGFVLTAWRLLRCTPVGGYGYDPPQWPPPNWFAG 141          
BLAST of mRNA_Ecto-sp6_S_contig100.769.1 vs. uniprot
Match: A0A4D9DFE3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DFE3_9STRA)

HSP 1 Score: 122 bits (306), Expect = 5.480e-34
Identity = 49/77 (63.64%), Postives = 61/77 (79.22%), Query Frame = 1
Query:    4 GAAMISFIKAYKKELSPLIPPACRFLPTCSVYGVQAIEKFGPTKGAVLTAWRLMRCNPFAGYGVDYPQWPPPGWFAG 234
             A +I+F + YK+ +SPL+P ACRF PTCS Y +++++KFGP KGAVLTAWRL+RCNP  G G D PQWPPPGW AG
Sbjct:   65 SAILINFFRGYKRYISPLLPQACRFFPTCSEYAIESVQKFGPAKGAVLTAWRLLRCNPLGGRGWDPPQWPPPGWKAG 141          
BLAST of mRNA_Ecto-sp6_S_contig100.769.1 vs. uniprot
Match: W7TML8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TML8_9STRA)

HSP 1 Score: 122 bits (306), Expect = 7.720e-33
Identity = 49/77 (63.64%), Postives = 61/77 (79.22%), Query Frame = 1
Query:    4 GAAMISFIKAYKKELSPLIPPACRFLPTCSVYGVQAIEKFGPTKGAVLTAWRLMRCNPFAGYGVDYPQWPPPGWFAG 234
             A +I+F + YK+ +SPL+P ACRF PTCS Y +++++KFGP KGAVLTAWRL+RCNP  G G D PQWPPPGW AG
Sbjct:  163 SAILINFFRGYKRYISPLLPQACRFFPTCSEYAIESVQKFGPAKGAVLTAWRLLRCNPLGGRGWDPPQWPPPGWKAG 239          
BLAST of mRNA_Ecto-sp6_S_contig100.769.1 vs. uniprot
Match: A0A7S1U9Q3_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U9Q3_9STRA)

HSP 1 Score: 118 bits (295), Expect = 3.420e-32
Identity = 47/78 (60.26%), Postives = 61/78 (78.21%), Query Frame = 1
Query:    1 VGAAMISFIKAYKKELSPLIPPACRFLPTCSVYGVQAIEKFGPTKGAVLTAWRLMRCNPFAGYGVDYPQWPPPGWFAG 234
            +  A++  ++ YK+E+SP + PACRFLPTCS Y + +I+ +GP KG VLTAWR++RCNPF G G D PQWPPPGWFAG
Sbjct:   71 LSRALMGAVRWYKREISPSMAPACRFLPTCSGYSIDSIKTYGPWKGLVLTAWRILRCNPFGGSGYDPPQWPPPGWFAG 148          
BLAST of mRNA_Ecto-sp6_S_contig100.769.1 vs. uniprot
Match: A0A7S0QB70_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0QB70_9EUKA)

HSP 1 Score: 118 bits (295), Expect = 9.770e-32
Identity = 47/75 (62.67%), Postives = 60/75 (80.00%), Query Frame = 1
Query:   16 ISFIKAYKKELSPLIPPACRFLPTCSVYGVQAIEKFGPTKGAVLTAWRLMRCNPFAGYGVDYPQWPPPGWFAGER 240
            +  +K YK+ LSPL+PP CRF+PTCS Y +Q+ E+F P + AVLT WRL+RCNP AGYGVD PQWPPPG++AG +
Sbjct:   42 VGALKWYKRALSPLLPPGCRFVPTCSEYAIQSFEQFSPVQAAVLTVWRLVRCNPTAGYGVDAPQWPPPGYWAGSQ 116          
BLAST of mRNA_Ecto-sp6_S_contig100.769.1 vs. uniprot
Match: A0A7S2R8H5_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R8H5_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.920e-31
Identity = 49/72 (68.06%), Postives = 58/72 (80.56%), Query Frame = 1
Query:    1 VGAAMISFIKAYKKELSPLIPPACRFLPTCSVYGVQAIEKFGPTKGAVLTAWRLMRCNPFAGYGVDYPQWPP 216
            V   M++ I  YK  +SPL+PPACRFLPTCS YGVQAIE+FGP+KG VLTAWRL+RC+PF G G D P+WPP
Sbjct:   63 VSIGMVATIGVYKNVISPLLPPACRFLPTCSQYGVQAIEEFGPSKGVVLTAWRLLRCSPFGGKGYDPPKWPP 134          
BLAST of mRNA_Ecto-sp6_S_contig100.769.1 vs. uniprot
Match: B8BR73_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BR73_THAPS)

HSP 1 Score: 113 bits (283), Expect = 2.600e-31
Identity = 49/79 (62.03%), Postives = 62/79 (78.48%), Query Frame = 1
Query:    1 VGAAMISFIKAYKKELSPLIPPACRFLPTCSVYGVQAIEKFGPTKGAVLTAWRLMRCNPFAGYGVDYPQWPPPGWFAGE 237
            + ++MI+ I  YK+ +SPL+PPACRFLPTCS YGVQAIE+FGP+KG +LTAWRL RC+PF G G D P+WPP  +  G 
Sbjct:    1 MSSSMINAIGFYKQWISPLLPPACRFLPTCSQYGVQAIEEFGPSKGVLLTAWRLARCSPFGGRGYDPPKWPPVAYNYGS 79          
BLAST of mRNA_Ecto-sp6_S_contig100.769.1 vs. uniprot
Match: A0A7S2ENE8_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2ENE8_TRICV)

HSP 1 Score: 118 bits (295), Expect = 3.990e-31
Identity = 50/72 (69.44%), Postives = 62/72 (86.11%), Query Frame = 1
Query:    1 VGAAMISFIKAYKKELSPLIPPACRFLPTCSVYGVQAIEKFGPTKGAVLTAWRLMRCNPFAGYGVDYPQWPP 216
            + A+M+S I  YK+ +SPL+PPACRF+PTCS YGVQAI++FGPTKGA+LTAWRLMRC+PF G G D P+WPP
Sbjct:  170 MSASMVSAIGFYKQFISPLLPPACRFVPTCSQYGVQAIQEFGPTKGAMLTAWRLMRCSPFGGKGYDPPRWPP 241          
BLAST of mRNA_Ecto-sp6_S_contig100.769.1 vs. uniprot
Match: A0A1E7FRQ3_9STRA (DUF37-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FRQ3_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.250e-29
Identity = 47/71 (66.20%), Postives = 58/71 (81.69%), Query Frame = 1
Query:    4 GAAMISFIKAYKKELSPLIPPACRFLPTCSVYGVQAIEKFGPTKGAVLTAWRLMRCNPFAGYGVDYPQWPP 216
             AAMI+ I  YK  +SPL+PPACRF+PTCS YGVQAI+++G TKG VLT+WRL+RC+PF G G D P+WPP
Sbjct:   51 SAAMIATIGIYKNFISPLLPPACRFVPTCSQYGVQAIKEYGSTKGVVLTSWRLLRCSPFGGKGYDPPKWPP 121          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF53_ECTSI1.350e-57100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZNH9_9STRA2.140e-3871.79Hemolytic domain-containing protein n=1 Tax=Tribon... [more]
A0A4D9DFE3_9STRA5.480e-3463.64Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TML8_9STRA7.720e-3363.64Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A7S1U9Q3_9STRA3.420e-3260.26Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S0QB70_9EUKA9.770e-3262.67Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S2R8H5_9STRA1.920e-3168.06Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
B8BR73_THAPS2.600e-3162.03Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S2ENE8_TRICV3.990e-3169.44Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A1E7FRQ3_9STRA1.250e-2966.20DUF37-domain-containing protein n=1 Tax=Fragilario... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig100contigEcto-sp6_S_contig100:650041..650286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score177.6
Seed ortholog evalue2.3e-42
Seed eggNOG ortholog2880.D8LF53
Model size246
KEGG koko:K08998
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Haemolytic
EggNOG OGs2S1FR@2759,COG0759@1
Cds size234
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348728.0704257-UTR-Ecto-sp6_S_contig100:650040..6500521682348728.0704257-UTR-Ecto-sp6_S_contig100:650040..650052Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig100 650041..650052 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348728.0814042-CDS-Ecto-sp6_S_contig100:650052..6502861682348728.0814042-CDS-Ecto-sp6_S_contig100:650052..650286Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 650053..650286 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig100.769.1prot_Ecto-sp6_S_contig100.769.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig100 650053..650286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig100.769.1

>prot_Ecto-sp6_S_contig100.769.1 ID=prot_Ecto-sp6_S_contig100.769.1|Name=mRNA_Ecto-sp6_S_contig100.769.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=78bp
MISFIKAYKKELSPLIPPACRFLPTCSVYGVQAIEKFGPTKGAVLTAWRL
MRCNPFAGYGVDYPQWPPPGWFAGERW*
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mRNA from alignment at Ecto-sp6_S_contig100:650041..650286+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig100.769.1 ID=mRNA_Ecto-sp6_S_contig100.769.1|Name=mRNA_Ecto-sp6_S_contig100.769.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=246bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:650041..650286+ (Ectocarpus species6 EcLAC_371)
GTTGGAGCGGCCATGATCTCCTTCATCAAGGCGTACAAGAAGGAGCTGTC GCCTTTGATCCCTCCGGCGTGCCGCTTCTTGCCGACGTGTTCGGTGTACG GCGTGCAGGCAATCGAGAAGTTCGGCCCGACGAAGGGGGCGGTGCTGACG GCGTGGCGGTTGATGCGGTGCAACCCTTTCGCCGGGTACGGGGTCGATTA CCCGCAGTGGCCTCCCCCGGGCTGGTTTGCGGGAGAAAGGTGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:650041..650286+

>mRNA_Ecto-sp6_S_contig100.769.1 ID=mRNA_Ecto-sp6_S_contig100.769.1|Name=mRNA_Ecto-sp6_S_contig100.769.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=234bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:650041..650286+ (Ectocarpus species6 EcLAC_371)
ATGATCTCCTTCATCAAGGCGTACAAGAAGGAGCTGTCGCCTTTGATCCC
TCCGGCGTGCCGCTTCTTGCCGACGTGTTCGGTGTACGGCGTGCAGGCAA
TCGAGAAGTTCGGCCCGACGAAGGGGGCGGTGCTGACGGCGTGGCGGTTG
ATGCGGTGCAACCCTTTCGCCGGGTACGGGGTCGATTACCCGCAGTGGCC
TCCCCCGGGCTGGTTTGCGGGAGAAAGGTGGTGA
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