mRNA_Ecto-sp6_S_contig100.768.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig100.768.1
Unique NamemRNA_Ecto-sp6_S_contig100.768.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig100.768.1 vs. uniprot
Match: A0A6H5JMR2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JMR2_9PHAE)

HSP 1 Score: 289 bits (739), Expect = 3.610e-93
Identity = 151/158 (95.57%), Postives = 155/158 (98.10%), Query Frame = 3 
Query:  234 MQLCVGRSMAMLAMALRNASGFVGPVRFTAARSAGGVLRMSSGPTAASRPSVPVLDAQAAELKAERLWGMADAQKPGLSVPSERLDVGEVQAAAESTPRQDSVSIPGMGAFGKRERDDFIEGEGETSALRRYQYSDQLLTDDDSGEESREDDGNEYYI 707
            MQLCVGRSMAMLA+ALRNASGFVGPVRFTAARSAG VLRMSSGPT+ASRPSVPVLDAQAAELKAERLWGMADAQKPGLSVPSERLD+GEVQAAAEST RQDSVS+PGMG FGKRERDDFIEGEGETSALRRYQYSDQLLTDDDSGEESREDDGNEYYI
Sbjct:    1 MQLCVGRSMAMLAIALRNASGFVGPVRFTAARSAGVVLRMSSGPTSASRPSVPVLDAQAAELKAERLWGMADAQKPGLSVPSERLDLGEVQAAAESTSRQDSVSMPGMGVFGKRERDDFIEGEGETSALRRYQYSDQLLTDDDSGEESREDDGNEYYI 158
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JMR2_9PHAE3.610e-9395.57Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig100contigEcto-sp6_S_contig100:644599..648738 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1507
Hectar predicted targeting categorysignal peptide
Exons3
Cds size477
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348727.9941685-UTR-Ecto-sp6_S_contig100:644598..6448311682348727.9941685-UTR-Ecto-sp6_S_contig100:644598..644831Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig100 644599..644831 +
1682348728.0386152-UTR-Ecto-sp6_S_contig100:647941..6487381682348728.0386152-UTR-Ecto-sp6_S_contig100:647941..648738Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig100 647942..648738 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348728.003604-CDS-Ecto-sp6_S_contig100:644831..6449341682348728.003604-CDS-Ecto-sp6_S_contig100:644831..644934Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 644832..644934 +
1682348728.0125425-CDS-Ecto-sp6_S_contig100:645229..6453931682348728.0125425-CDS-Ecto-sp6_S_contig100:645229..645393Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 645230..645393 +
1682348728.0216374-CDS-Ecto-sp6_S_contig100:647731..6479411682348728.0216374-CDS-Ecto-sp6_S_contig100:647731..647941Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 647732..647941 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig100.768.1prot_Ecto-sp6_S_contig100.768.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig100 644832..647941 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig100.768.1

>prot_Ecto-sp6_S_contig100.768.1 ID=prot_Ecto-sp6_S_contig100.768.1|Name=mRNA_Ecto-sp6_S_contig100.768.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=159bp
MQLCVGRSMAMLAMALRNASGFVGPVRFTAARSAGGVLRMSSGPTAASRP
SVPVLDAQAAELKAERLWGMADAQKPGLSVPSERLDVGEVQAAAESTPRQ
DSVSIPGMGAFGKRERDDFIEGEGETSALRRYQYSDQLLTDDDSGEESRE
DDGNEYYI*
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mRNA from alignment at Ecto-sp6_S_contig100:644599..648738+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig100.768.1 ID=mRNA_Ecto-sp6_S_contig100.768.1|Name=mRNA_Ecto-sp6_S_contig100.768.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4140bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:644599..648738+ (Ectocarpus species6 EcLAC_371)
ATCGTGTTGGGCAGCGTGCATCCGACAACAAAGCTCCCCGAGTCCGTCCA
CCTTTCTCGCCTCTCGTTTGTACCTTGTTCTATTGATAGCCGCCGTCGCT
GGCGCTTGGGGCGTCAATCCTGCCAGGTTACCCCGAGTTTAATCGGGGCG
CCTCAGTTGCCTCAAGTTGTATAGCATTCGAAGAAAGCAAGCAACCCTCG
AGACAGCAGTCTCACAGCAGTCGACGGAAGGAAATGCAACTGTGTGTAGG
GCGGTCTATGGCGATGCTGGCGATGGCGCTGAGAAACGCCAGCGGCTTCG
TGGGGCCTGTTCGATTCACCGCTGCGAGGTCGGCAGGTGAGCACTCGAGG
GTTTTTGTTCGTACAAGGGTGTGGTGTCTACAAGCGGCACCTTCCGTTCA
GCCGATATCGTTTATCAAGTTGAGGTTGAGGTCTGTTGGCAGCGCGGGAA
GCTTCTGCAGCGATTCCCCGGCCCTCTTTGTCGCGCTGCGCAAATCTTAC
CCCGGCTCATTACAATGCTGGTGTTCTTCTCTTCCACCTTGCTTCAAAAG
TATCTCGACCTCCCCACGGAGGCTTGAAAATCTCCAATTCCACATCCATG
TTGGTTGTGTTGCTGACCTCGCGTGCGCCAGGTGGCGTCCTGAGGATGAG
CTCCGGGCCAACGGCTGCCTCGCGCCCTAGCGTGCCGGTCCTCGACGCGC
AGGCTGCGGAGCTCAAGGCCGAGCGGCTATGGGGTATGGCGGACGCCCAG
AAGCCGGGGCTGTCGGTACCATCTGAGAGATTAGACGTTGGGGAGGTGAG
GTGCTGCTGTTCTGATTCTGCTGTGTTTTTCGTTTTTCGCGTTGTTTGCT
GCGTCCACGCATCAAATCCACGGTTGCTCTCACACACACGTATTGCTCGG
CGATCGATACACGTGGGATTTAAAACACTTTCCCGGCCTTTTTATAGTGG
TGTTGAATTTTCCACTCGCCAATTAACGAAAATGGATGATCAAGAGTTTG
TTGTCGTGCCCATTTCCTTTCTAGATCGTCAGCAACATCTGCTGCATGGA
CAATCGTTCGGCACCTTTGACTGGACAACAATTTAATTACTCAGTCGAGC
GAAAACGCGGGCAACGACAGGCGGCTTTTTCACTCGCTGCAACAGCCCTT
TGCCTTGAGTTCAGTTTAATCGTTTCCAACGCATGGCTGGCGGCGAATTG
AAAAATCGACAGTATCAAGCAGGGAATACTTTGGAAACCAAGGCCGCTTT
CCGTCTACCGTCTTGGTACGAGTTCGGATAGGTAGATACTCCAGTTACAA
TCTAGTCGGCGGGTGGTTGGTTTTCCACACAATGTGCGGCAAAGTTCCCT
CTCTGGACTCAGTTAGGGTTGTGGCATGTGACACCAACGGAAACCTTAAG
TGCCCGCAGTCACGACGCTTCTTTTCTATGTCTCGTGCGTTTTGACATCG
ATGCAACCGTAATTTGAAGTTGTGGTTGTTTTTTGTTATTTGGTTTTGTC
CCCGCTCATGTCTACCTTTTGATATCCATACCGGCGACCTCAGTTTGACT
GAGGGCGGCAGATAATACTTGTACTTGGCGCTTCCTCACCACACACCGGT
CAAAAGAAATTGGCCTTGCCTCCTGTTGTAGGGTAATTTAATACCACTTT
TTGCGATGCTTGGAACCACCATGTTGGCGTTGCTGTCGGACTTTTTCCTC
TCCGCTGGGCCCCGGTTATGTAGGTCGTGTCGTTCCTCGAGGTGGTGTTC
TTCACCTTGGCCGTGGTGAGGCTGTTTCAACACAAATTCTCTTCTTCGAG
CTTTTTTTTAAGAGGCCTCAGCTCTCAAGTTCTGTGACTCAAGTGCGAGT
AGCCTACCAGCTGGAAGCACGGTCAGTTTCTTTTGTCGGCGTGAGGGTAG
GAAGTGCCACATGTTACCGAGCGGATGCAGTTCATGATAAAGTGGAAAGA
AGTAAAAAATAACAGGTCGCTTCCGCTCGGTATGGGACGCCAAACAGAAT
ACGAAGTACAAGATAAAAAAGAACCACCCATCAAGACCATAACAATCGCA
TATTTCTATTTCTATACCCCTGACTCTCAATAGGACGGGGTATACAGCAG
TCACCGCCGGAGTTGCACCAGCCATGCCATTCCCAGACGCACAATCGTTT
TAACAACGTTTGGGGGGCTCAAGATCAAGACACCGGTGATACCTGTATGC
TCGATTCCAACACAAGCAGACAAACTCGTCGCATGGTGTCCCCCGTACCA
TGCCTGGGATATACCCCATGCCAGATTCTCGCCGGACAGGCTAGGCCCCG
CCATACGGAGACACGCATAGGGTTTCCGCGTATTTTATTAAGTACCCATG
CATGTACATTGTCGGAAAAACGTAACTAAACAACAGTGGTGAACACCACA
CGGGTGTTTGGGTGCGGCAGCTTCGTCAGAGGCCGAAAGAGAAATACTTT
GACTCAAGACCTTGATTGATTAGCACCCCAAACATCTGGGAAGGGTGCAG
GAGTTTATCAAGGAATAGTTCAGTAGGCAACTTTTTTTGTTAGTATCCTA
TTTACGTTGCACGTTGCTATGAGCTTTTGCTACACCTTAAATTGGCTTAG
CTTGTACGCGGAGCTTGTTTTTCGCCTCATTTTTTTCACCTGTAATGAGG
GAGGATGGTTGATTTCCCTTTAATTAGTGGGGATGAGGATTTCGCCGCTG
CCGACCCTTTTTCCGTGACTTCTGTCCCGCTGTCAGACCGGTTTGTGTTG
AATCGTGTATTGGTCGTTGGCCTCAAGGAAGAGCGGGAGAGTGGGCAGCC
CAGCCCACAAACAGCTCCATGACACAAGGCTCAACGAATACATATTCCCA
TTCAACATAAATATTGTCATTGTTGGAGGAATAAAAGGTATTGCCGCCAA
GAGGATGGTGGGTAGAGGTAGAGATGATAATGGTTTTTGAAGTGAAGACA
ACAACAGCAACAGCGTGCCAACAACATTAACAACGAGACACGCACTTGTT
CATAGTTCATATCCATGTTCAATTGCCTACCGGATGTAGACTCTTCCCAC
ATGACCTTGCTCGTTACGCAGCGGTCGGCGTCGTAATGGAAGTCCTCTAA
AGTCTTGAGCGCCCTTGAAATTGAACGAAATAGGTCCAAGCGGCTGCTGA
GAGCACGCCGCGGCAAGATTCGGTGAGCATCCCTGGCATGGGTGCTTTCG
GCAAGAGGGAGAGGGACGACTTCATCGAAGGAGAGGGGGAAACATCCGCG
TTGCGGCGGTATCAGTACAGCGATCAGCTTTTGACGGACGACGACAGCGG
AGAAGAGAGCAGGGAAGACGACGGCAACGAGTACTACATTTGATTGGTGC
CTCGTATCCGGACATAGTTAGACTGTAACGTACGTGTACCTCACGCCACC
GGGATAGTGATAGGCTTGAGAATTTCTCTGCGAGGTGCAATCAATCCGCC
GCGGACCGCTTCCGGCGAAATCTGTCGGCTGGGTTTGCTTAGTGTTGATT
CTACCACCGTTTTTTTTTTATCCTGATGGCTTATGTAGCCGCAACTCCGC
CTCGTCTCTGTGGCGGTGTTTTGAATGTGGCTGACTTGTGCTAGCTAGTA
ACTACGGTAAGTAAGTGTGTATGAAACCTGGCAACCCTGAGGCCATGAAG
TGGAAGCTTGTGCTTTAGCTTTGGGCCTGATGGGTTGCGGCCGATCTGCC
TGCAACATATTCGTTTGCGAGTTTCGGGAAATGTTTCAACTTGACGAAGA
AGGTCTTGATAGGAGAGAGCCGTTGTACAGGCAATTCATGAACTTTGCAA
GGCGTTTGAGGCGGTGCTAGCGTCCCGCCGGGAGGACGGGAAATTCTGGT
CTGATCGCAGGGAAACAATCAAATCAAGAACGTTGGTTGTGTAGTGGTTT
CTTTTTCCAGTGTTCCTGTACTACCATGCACTCGCCTGTCCCGCCTCTCT
GCGGAATGCATGTGCTACACATGCTCGCTTTGGTGGCGTTTGGTCTGCTG
CTTGTTTGAAGTCATGAACCCGAGTGGGGTGCAGCGCTTCGCGGTTTAAG
GCCTAACTCATGCATACGGGCAGGTAAAGTGGTTTTAAGTCGAAATGCGA
ATTTTCGGGTAAACATTCATGCCTGGGGCGGCATGCTTCT
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:644599..648738+

>mRNA_Ecto-sp6_S_contig100.768.1 ID=mRNA_Ecto-sp6_S_contig100.768.1|Name=mRNA_Ecto-sp6_S_contig100.768.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=477bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:644599..648738+ (Ectocarpus species6 EcLAC_371)
ATGCAACTGTGTGTAGGGCGGTCTATGGCGATGCTGGCGATGGCGCTGAG
AAACGCCAGCGGCTTCGTGGGGCCTGTTCGATTCACCGCTGCGAGGTCGG
CAGGTGGCGTCCTGAGGATGAGCTCCGGGCCAACGGCTGCCTCGCGCCCT
AGCGTGCCGGTCCTCGACGCGCAGGCTGCGGAGCTCAAGGCCGAGCGGCT
ATGGGGTATGGCGGACGCCCAGAAGCCGGGGCTGTCGGTACCATCTGAGA
GATTAGACGTTGGGGAGGTCCAAGCGGCTGCTGAGAGCACGCCGCGGCAA
GATTCGGTGAGCATCCCTGGCATGGGTGCTTTCGGCAAGAGGGAGAGGGA
CGACTTCATCGAAGGAGAGGGGGAAACATCCGCGTTGCGGCGGTATCAGT
ACAGCGATCAGCTTTTGACGGACGACGACAGCGGAGAAGAGAGCAGGGAA
GACGACGGCAACGAGTACTACATTTGA
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