mRNA_Ecto-sp6_S_contig100.767.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig100.767.1
Unique NamemRNA_Ecto-sp6_S_contig100.767.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.767.1 vs. uniprot
Match: D8LF51_ECTSI (Eukaryotic translation initiation factor 3 k subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF51_ECTSI)

HSP 1 Score: 378 bits (971), Expect = 1.400e-127
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 3 
Query:  324 VKSGTYDFEANKALLKLYQFFPDLCQPEKVALVLAKALMNVPSTDFMALMYIVPPNLHRCEPVHSLKRAADSLETAKFVDFWQTCADGDMPALIESVPGFKKHMRVFIVHTLATTFQDSTRQNMEQCLDLDGAELASFVEANADVVSASPDGSKFKFALNEFNQIQPKKFKESVEFDKILKTIDKLSSF 890
            VKSGTYDFEANKALLKLYQFFPDLCQPEKVALVLAKALMNVPSTDFMALMYIVPPNLHRCEPVHSLKRAADSLETAKFVDFWQTCADGDMPALIESVPGFKKHMRVFIVHTLATTFQDSTRQNMEQCLDLDGAELASFVEANADVVSASPDGSKFKFALNEFNQIQPKKFKESVEFDKILKTIDKLSSF
Sbjct:    7 VKSGTYDFEANKALLKLYQFFPDLCQPEKVALVLAKALMNVPSTDFMALMYIVPPNLHRCEPVHSLKRAADSLETAKFVDFWQTCADGDMPALIESVPGFKKHMRVFIVHTLATTFQDSTRQNMEQCLDLDGAELASFVEANADVVSASPDGSKFKFALNEFNQIQPKKFKESVEFDKILKTIDKLSSF 195
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.767.1 vs. uniprot
Match: A0A835Z1S6_9STRA (Eukaryotic translation initiation factor 3 k subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1S6_9STRA)

HSP 1 Score: 215 bits (548), Expect = 1.450e-63
Identity = 118/224 (52.68%), Postives = 146/224 (65.18%), Query Frame = 3 
Query:  213 LEQMDFPASYEALRPVVEHEYFDHRAVPQLEEYLEEQVKSGTYDFEANKALLKLYQFFPDLCQPEKVALVLAKALMNVPSTDFMALMYIVPPNLHRCEPVHSLKRAADSLETAKFVDFWQTCADGDMPALIESVPGFKKHMRVFIVHTLATTFQDSTRQNMEQCLDLDGAELASFVEANADVVSASPDGSKFKFALNEFNQIQPKKFKESVEFDKILKTIDKLS 884
            ++ M  PA + A+RPVVEHEYFDHR VPQLE YL EQ  SGTYDFEANKALLKLYQFFPDL + + VAL   KALM +P+ DF AL Y+ P      EP+ SL RA D+LE A++  FW    + +  ALI+ +PGF    R   +  LA TFQ      +E+ + L GAEL +FV      V    DG +  FA NEFNQ+QPK+FKESVEF+K+LK +  LS
Sbjct:    2 VQPMQLPARHAAMRPVVEHEYFDHRVVPQLEAYLAEQASSGTYDFEANKALLKLYQFFPDLVKADMVALAAGKALMALPAPDFAALSYLAPAAALAAEPLTSLARALDALEGARYGAFWAVTREPEAAALIQRLPGFADQARRVALSALAATFQSVPLSALEEAVALSGAELEAFVGGLGGEVKLG-DG-RAAFARNEFNQMQPKRFKESVEFEKVLKAVGTLS 223
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.767.1 vs. uniprot
Match: A0A7S2FZN4_9STRA (Eukaryotic translation initiation factor 3 subunit K n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FZN4_9STRA)

HSP 1 Score: 171 bits (432), Expect = 1.600e-46
Identity = 96/223 (43.05%), Postives = 140/223 (62.78%), Query Frame = 3 
Query:  222 MDFPASYEALRPVVEHEYFDHRAVPQLEEYLEEQVKSGTYDFEANKALLKLYQFFPDLCQPEKVALVLAKALMNVPSTDFMALMYIVPPNLHRCEPVHSLKRAADSLETAKFVDFWQTCADGDMPALIESVPGFKKHMRVFIVHTLATTFQDSTRQNMEQCLDLDGAELASFVEAN-ADVVSASPDGSKFKFALNEFNQIQPKKFKESVEFDKILKTIDKLSS 887
            M  PASYE +  +++ + F+  ++ +L+ YL+EQ+ + TYDF ANKALLKLY F+PD    + +AL L KALM +PSTD M L+Y+VP +    EPV +L R A  LETAKFV+FW+    G    L+++V GF + +R +++  L+ TFQ    +     L LD  +L  +V AN +D +S   +G    F  N  NQ +PKKFKE++ FD++L  ID L+S
Sbjct:    1 MALPASYEEIATLLDEQAFEKSSIEKLQAYLDEQIATETYDFVANKALLKLYSFYPDQASDQYIALALTKALMALPSTDMMLLLYLVPESAQTKEPVATLVRCAVHLETAKFVEFWEVANLGGNE-LLDAVSGFDEAIRSYMIGVLSITFQKVESETFADLLALDEGDLEEYVSANQSDKLSI--EGKNVVFTPNSENQQRPKKFKENISFDQMLPLIDFLAS 220
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.767.1 vs. uniprot
Match: A0A7S2H0N4_9STRA (Eukaryotic translation initiation factor 3 subunit K n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H0N4_9STRA)

HSP 1 Score: 153 bits (387), Expect = 6.430e-40
Identity = 87/223 (39.01%), Postives = 131/223 (58.74%), Query Frame = 3 
Query:  219 QMDFPASYEALRPVVEHEYFDHRAVPQLEEYLEEQVKSGTYDFEANKALLKLYQFFPDLCQPEKVALVLAKALMNVPSTDFMALMYIVPPNLHRCEPVHSLKRAADSLETAKFVDFWQTCADGDMPALIESVPGFKKHMRVFIVHTLATTFQDSTRQNMEQCLDLDGAELASFVEANADVVSASPDGSKFKFAL-NEFNQIQPKKFKESVEFDKILKTIDKLS 884
            +M+ P S +++   +  +      +  L+EYL EQV++ TYDF ANK L+KLYQF+P+      +AL + K++M +PSTD   L+Y+VP  L   EP+H+L R AD LETA+FV+FW+    G    L++++PGF + +R F++  L+ TFQ    +     L LD   L  F+    D +    +  KF   L N  NQ +PKKFKE++ FD +L  I+ LS
Sbjct:    5 EMEIPQSAQSIAEKLALDEHSVELIDTLQEYLNEQVQTDTYDFMANKTLMKLYQFYPERSNENCIALAVTKSMMALPSTDLSVLLYLVPETLALKEPIHTLVRCADHLETARFVEFWEVANLGGNE-LLDAIPGFPEAIRSFMIGVLSMTFQKLQSETFLDLLMLDEESLEEFIAEQTDKLCL--EEKKFVIFLPNSENQSRPKKFKENISFDHMLPIINLLS 224
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.767.1 vs. uniprot
Match: A0A7S2WSD7_9STRA (Eukaryotic translation initiation factor 3 subunit K n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WSD7_9STRA)

HSP 1 Score: 148 bits (374), Expect = 4.650e-38
Identity = 85/215 (39.53%), Postives = 122/215 (56.74%), Query Frame = 3 
Query:  243 EALRPVVEHEYFDHRAVPQLEEYLEEQVKSGTYDFEANKALLKLYQFFPDLCQPEKVALVLAKALMNVPSTDFMALMYIVPPNLHRCEPVHSLKRAADSLETAKFVDFWQTCADGDMPALIESVPGFKKHMRVFIVHTLATTFQDSTRQNMEQCLDLDGAELASFVEANADVVSASPDGSKFKFALNEFNQIQPKKFKESVEFDKILKTIDKLSS 887
            E++   +    +D  A+  LE Y+ EQV+  TYDF ANKALLKLYQFFP       VAL+L KALM +PSTD   L+Y+VP  +   EP+ +L R  + LET KFV+FW+    G    L++++ GF + MR +++  L  TFQ    +     + L    LA +V   +DV+    +G +  F  N  NQ QPK FKE++ FD +   +  L+S
Sbjct:   12 ESVATALRRNEYDQDAIELLESYVAEQVEQNTYDFVANKALLKLYQFFPARTNEHMVALILTKALMALPSTDMTLLLYLVPDTVRAKEPILTLVRCHEHLETGKFVEFWEVANLGGNE-LLDAIHGFDEAMRQYMISVLCMTFQSLESEVFMDLVALPDEHLAEYVGTKSDVMRL--EGKQVIFVENPQNQPQPKTFKENISFDHLAPVMSLLTS 223
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.767.1 vs. uniprot
Match: W7U338_9STRA (Eukaryotic translation initiation factor 3 subunit K n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U338_9STRA)

HSP 1 Score: 142 bits (357), Expect = 3.240e-35
Identity = 83/220 (37.73%), Postives = 130/220 (59.09%), Query Frame = 3 
Query:  231 PASYEALRP-VVEHEYFDHRAVPQLEEYLEEQVKSGTYDFEANKALLKLYQFFPDLCQPEKVALVLAKALMNVPSTDFMALMYIVPPNLHRCEPVHSLKRAADSLETAKFVDFWQTCADGDMPALIESVPGFKKHMRVFIVHTLATTFQDSTRQNMEQCLDLDGAELASFVEANADVVSASPDGSKFKFALNEFNQIQPKKFKESVEFDKILKTIDKLSS 887
            P+SY ++   V+    +    V  LEEYL+ QVK G+YDFEANK+LLKLY  +P L   E V  +L KAL+N+P+TDF  L+YI+P  L   E V ++K AA++LETA++ DFW         A+  ++P +K  +R  I+   A T++   + ++   + L G EL SF+ AN   + A  +  +  FA N+ NQ   +K+KE V+   +L  +++L++
Sbjct:   44 PSSYNSVHSNVLGDGLYTQEKVKHLEEYLQLQVKEGSYDFEANKSLLKLYLLYPPLANNENVETILLKALLNLPATDFTLLLYILPEKLQTDENVLTIKDAAEALETARYADFWSIL--NSRAAVFLAIPEWKDDIRKIILTVHAATYKAVDKAHVSDGVGLSGDELDSFLTANTPGLVAKVEVDRVIFAPNKENQPWVRKYKEKVDLQNMLGILNRLAA 261
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.767.1 vs. uniprot
Match: A0A7S4ULZ9_GUITH (Eukaryotic translation initiation factor 3 subunit K n=3 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4ULZ9_GUITH)

HSP 1 Score: 131 bits (330), Expect = 6.190e-32
Identity = 73/210 (34.76%), Postives = 117/210 (55.71%), Query Frame = 3 
Query:  243 EALRPVVEHEYFDHRAVPQLEEYLEEQVKSGTYDFEANKALLKLYQFFPDLCQPEKVALVLAKALMNVPSTDFMALMYIVPPNLHRCEPVHSLKRAADSLETAKFVDFWQTCADGDMPALIESVPGFKKHMRVFIVHTLATTFQDSTRQNMEQCLDLDGAELASFVEANADVVSASPDGSKFKFALNEFNQIQPKKFKESVEFDKILKTI 872
            E ++ ++    FD    PQLE Y++EQ+K G  D +AN ALL+ YQ+ P     E V  +L KALM +P+TDFM  MY+VP  +   + +  LK+ +D LET +F ++W   AD    ++   +PGF + +R +IV  ++ T+Q   R  +E  ++L GA+L   +E    V      GS  +  +NEFN+   K  ++ + FD++   I
Sbjct:    3 EEVQRLLSERRFDPSITPQLEAYVDEQIKGGYTDLDANLALLRFYQYNPATANSEVVCKILVKALMQMPATDFMLCMYLVPGAVKE-QKIEVLKQLSDKLETCQFKEYWADMADEKNASVANGIPGFHEAIRQYIVGVISATYQVIARDELEILINLKGAQLDQLLEEKKWVAK----GSDVQIPVNEFNEASVKFKQDGISFDQLAPII 207
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.767.1 vs. uniprot
Match: A0A7S2SPG3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SPG3_9STRA)

HSP 1 Score: 121 bits (303), Expect = 1.090e-28
Identity = 64/144 (44.44%), Postives = 89/144 (61.81%), Query Frame = 3 
Query:  243 EALRPVVEHEYFDHRAVPQLEEYLEEQVKSGTYDFEANKALLKLYQFFPDLCQPEKVALVLAKALMNVPSTDFMALMYIVPPNLHRCEPVHSLKRAADSLETAKFVDFWQTCADGDMPALIESVPGFKKHMRVFIVHTLATTFQ 674
            E++   +    +D  A+  LE Y+ EQV+  TYDF ANKALLKLYQFFP       VAL+L KALM +PSTD   L+Y+VP  +   EP+ +L R  + LET KFV+FW+    G    L++++ GF + MR +++  L  TFQ
Sbjct:   12 ESVATALRRNEYDQDAIELLESYVAEQVEQNTYDFVANKALLKLYQFFPARTNEHMVALILTKALMALPSTDMTLLLYLVPDTVRAKEPILTLVRCHEHLETGKFVEFWEVANLGGNE-LLDAIHGFDEAMRQYMISVLCMTFQ 154
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.767.1 vs. uniprot
Match: A0A067CBU0_SAPPC (Eukaryotic translation initiation factor 3 subunit K n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CBU0_SAPPC)

HSP 1 Score: 114 bits (285), Expect = 1.680e-25
Identity = 81/217 (37.33%), Postives = 121/217 (55.76%), Query Frame = 3 
Query:  246 ALRPVVEHEYFDHRAVPQLEEYLEEQVKSGTYDFEANKALLKLYQFFPDLCQPE----KVALVLAKALMNVPSTDFMALMYIVPPNLHRCEPVHSLKRAADSLETAKFVDFWQTCADGDMPALIESVPGFKKHMRVFIVHTLATTFQDSTRQNMEQCLDLDGAELASFVEANADVVSASPDGSKFKFALNEFNQIQPKKFKESVEFDKILKTIDKLS 884
            A+R  V  +  D + V  LE YL+EQ+ S   D EAN  LLKLY  +P   +PE    +VA VLAK LM +PS  F+   Y+V   L + + +  L +A D L++  F DFW      D+P   + +PGF++ +R FI+ T+A + +   +  ++  L+L   ++AS V   A++   + D S +    N  NQ++PKKFKE +EF  IL TI  LS
Sbjct:   18 AVRAQVAADGMDEKLVGLLEAYLDEQIASNVVDEEANLMLLKLYTIYP--VKPEQHQTRVAQVLAKGLMALPSKYFLGATYMVTEALRKDKNITDLLKAGDVLQSCLFTDFWTL----DLP-FAKKIPGFEQAVRAFILSTIAKSHEVVAKAFVQAQLNLSEKDVASLV---AELGWTTKDAS-YVVTPNSENQMRPKKFKEDIEFADILDTIQVLS 223
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.767.1 vs. uniprot
Match: A0A1X6NQY4_PORUM (Eukaryotic translation initiation factor 3 subunit K n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NQY4_PORUM)

HSP 1 Score: 113 bits (282), Expect = 4.710e-25
Identity = 63/170 (37.06%), Postives = 103/170 (60.59%), Query Frame = 3 
Query:  258 VVEHEYFDHRAVPQLEEYLEEQVKSGTYDFEANKALLKLYQFFPDLCQPEKVALVLAKALMNVPSTDFMALMYIVPPNLHRCEPVHSLKRAADSLETAKFVDFWQTCADGDMPALIESVPGFKKHMRVFIVHTLATTFQDSTRQNMEQCLDLDGAELASFVEANADVVSA 767
            +++ + +D   +P LEEY+E+QV +GT D  AN A LKLYQF+P   +   V+ +L KA+M +PSTDF+  MY++P      EP+ +L + A  LET +F DFW   A G +  L++ VPGF + +R F++  +  T++   R  + + L L+G + A+   A  +V+ +
Sbjct:   17 LLQSQRYDPDILPTLEEYVEQQVATGTNDAMANLATLKLYQFYPATYKTAVVSKILIKAIMALPSTDFLCAMYLIPAATADDEPIPALVQLASMLETGRFEDFWP--ATGAVRQLLDGVPGFDEAVRSFMLVVIGRTYKRVERTVLARLLGLEGVDEAAEEAAVDEVIKS 184
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF51_ECTSI1.400e-127100.00Eukaryotic translation initiation factor 3 k subun... [more]
A0A835Z1S6_9STRA1.450e-6352.68Eukaryotic translation initiation factor 3 k subun... [more]
A0A7S2FZN4_9STRA1.600e-4643.05Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2H0N4_9STRA6.430e-4039.01Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2WSD7_9STRA4.650e-3839.53Eukaryotic translation initiation factor 3 subunit... [more]
W7U338_9STRA3.240e-3537.73Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S4ULZ9_GUITH6.190e-3234.76Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2SPG3_9STRA1.090e-2844.44Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A067CBU0_SAPPC1.680e-2537.33Eukaryotic translation initiation factor 3 subunit... [more]
A0A1X6NQY4_PORUM4.710e-2537.06Eukaryotic translation initiation factor 3 subunit... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig100contigEcto-sp6_S_contig100:638323..644440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score378.6
Seed ortholog evalue2e-102
Seed eggNOG ortholog2880.D8LF51
Preferred nameEIF3K
Model size1520
KEGG koko:K05699,ko:K13344,ko:K15028
KEGG TC3.A.20.1
KEGG Pathwayko04146,ko04510,ko04520,ko04530,ko04670,ko04810,ko05146,ko05203,ko05322,map04146,map04510,map04520,map04530,map04670,map04810,map05146,map05203,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005852,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010941,GO:0010942,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0042981,GO:0043043,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0065007,GO:0071704,GO:1901564,GO:1901566,GO:1901576
Exons7
EggNOG free text desc.ribosome binding
EggNOG OGsKOG3252@1,KOG3252@2759
Ec32 ortholog descriptioneukaryotic translation initiation factor 3 k subunit
Ec32 orthologEc-06_001720.2
Cds size687
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03012,ko04131,ko04147,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig100.767.1prot_Ecto-sp6_S_contig100.767.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig100 638950..642944 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348727.886073-UTR-Ecto-sp6_S_contig100:638322..6389491682348727.886073-UTR-Ecto-sp6_S_contig100:638322..638949Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig100 638323..638949 -
1682348727.9571302-UTR-Ecto-sp6_S_contig100:642944..6430021682348727.9571302-UTR-Ecto-sp6_S_contig100:642944..643002Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig100 642945..643002 -
1682348727.9664164-UTR-Ecto-sp6_S_contig100:644292..6444401682348727.9664164-UTR-Ecto-sp6_S_contig100:644292..644440Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig100 644293..644440 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348727.898702-CDS-Ecto-sp6_S_contig100:638949..6390571682348727.898702-CDS-Ecto-sp6_S_contig100:638949..639057Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 638950..639057 -
1682348727.9102712-CDS-Ecto-sp6_S_contig100:639820..6398921682348727.9102712-CDS-Ecto-sp6_S_contig100:639820..639892Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 639821..639892 -
1682348727.9186902-CDS-Ecto-sp6_S_contig100:640562..6407031682348727.9186902-CDS-Ecto-sp6_S_contig100:640562..640703Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 640563..640703 -
1682348727.9278958-CDS-Ecto-sp6_S_contig100:641348..6414891682348727.9278958-CDS-Ecto-sp6_S_contig100:641348..641489Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 641349..641489 -
1682348727.9377427-CDS-Ecto-sp6_S_contig100:642089..6421971682348727.9377427-CDS-Ecto-sp6_S_contig100:642089..642197Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 642090..642197 -
1682348727.947838-CDS-Ecto-sp6_S_contig100:642827..6429441682348727.947838-CDS-Ecto-sp6_S_contig100:642827..642944Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 642828..642944 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig100.767.1

>prot_Ecto-sp6_S_contig100.767.1 ID=prot_Ecto-sp6_S_contig100.767.1|Name=mRNA_Ecto-sp6_S_contig100.767.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=229bp
MPLEQMDFPASYEALRPVVEHEYFDHRAVPQLEEYLEEQVKSGTYDFEAN
KALLKLYQFFPDLCQPEKVALVLAKALMNVPSTDFMALMYIVPPNLHRCE
PVHSLKRAADSLETAKFVDFWQTCADGDMPALIESVPGFKKHMRVFIVHT
LATTFQDSTRQNMEQCLDLDGAELASFVEANADVVSASPDGSKFKFALNE
FNQIQPKKFKESVEFDKILKTIDKLSSF*
back to top

mRNA from alignment at Ecto-sp6_S_contig100:638323..644440-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig100.767.1 ID=mRNA_Ecto-sp6_S_contig100.767.1|Name=mRNA_Ecto-sp6_S_contig100.767.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=6118bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:638323..644440- (Ectocarpus species6 EcLAC_371)
TCTGACTTCCCCCGCGGCTCTCTCCTCTGCTCCAGTCGGTTCCAAGCACG
CGTAGAGCGTTTATCGAGTAAGGTCGGAAGACAGCTGTTTTGCAAGGTCT
AGCGCAACGTGTGGGTGGCTTTGATCAAGGAGACAGCATTTGAAAAAGGT
GTGTGACAGCAATGGCTGTAGCGGACTTGCGGCTGGCTGCCTTGCTGGAC
AGTAGTGTCTGTGTTAGGACGGAGAATGCACTGTTGTGCCATTTTGGAAT
ACCTTTACGACCATGTCTCCAGCTGAGAGCCACCGCTACAACTTTTGCAG
AGATTCGCAACATGTAAAGAAGGTGTTAGTCTCTGCCGAAGACCTGGATG
GAGAGTACGTACGTGAGGAAGGTGACACCTCTCAAGTCAAGTCTACATGG
TTTGCACTATCGAGATTGAGTCGTCATGCGCAACCATCTCCTATAAATGT
TGGAGATTATTGCTCTCCAAAGCAAACAAACGGCTGCAGTAGACTATGTA
CAGCCGTAGGTGCACTCCTACCTCAGGTCTACAGGTAATATCGTCGAAAC
ATGTAGCATACCATCCCCCCCCCAATGTCGGCCGCTTACTCAACCGACAG
AAGCGTCTCTTGACCCCTTTAGGGCTGGATCGCCTTTTGGGGACACTTTT
TGTCCCCATCTTCTTCACCTGCTTTACCTCGCGAAGAATTGCATGATTGT
CTCATCCTTTGCACTACTCGATCGGGGGTTGCCAGGGTACACAGGGACGA
CTCAAGTCTAGTATGGATGCTTTGCAGAGTGGAGGAGTATGAGGGCAACG
AACAGGTCGAATCGCGGGGCGATTACGCCGCGGGTTCAACAGTGAAGTTG
CGCCGCGTCTGTCTATCCTTGGGTGGAAAGCGCTACTAGGGGCAAGCGCG
GAAGAAGTACATAGCCCACCGTTGATAGGAGACACCGAGCAACCTAGGGC
TTGAGTTAGAAGGTCTCGCTTTCCCTCTAGAGAAATATCTTGAAAATCTC
CTTTTCGTGCCCCGTTTACCACGCTCCCGCCAGTTGCTGTCTATAATCCC
TATCAAATGTCCCCTCGTATCGAGGGAAAAATTGATAGGGATCATACACA
AGAGACGGCTCAAGGGGGAATGCAGCTTTGCACTTGCACCCAGCGGTGGA
ACTGTCTGCACCATCCAATCAGCAGGCGTCGTTCGCTCTTTTTGTTACAT
TTCACAAATTTCGCATGAACGCCGAATTTTCTGTGCGTGGTAAGGGGGTA
AAACCCAAATGGCACGATTCCCGTACGCTCGTGCAAGTATTCACAATGAC
ACCGCCGGGTTGCCGTCATGGATAAATCGATCTCCATTTGAGGGGATAGT
GAGTGGTCGTTACCGCGGTACGTGGACAGCCAGCAATGGAGTGCAACTGA
TGTATCGCCGGTCGTCGTGCTGCCGGCAAACCATGCAGGTCTCCTTATTC
GTCGTGCGGCGACGTTCCGGACTACCTGTTTCATCTTTCGTTCATCATGC
CGCTGGAACAAATGGACTTCCCGGCGTCGTACGAGGCTTTGAGGCCGGTC
GTGGAGCACGAGTACTTCGACCACAGGGCGGTGCCCCAGCTGGAGGAGTA
TCTTGAAGAGCAGGCGAGGAGTCAGATCCAACGGGGCCGCGGCGGGGGGT
ACATAGGGCGGCGCACTCAACAGCATGCCTGGTCGCAAATGAGTGTCATA
ACACCACCCTTGCGTTTGAAAGGGCCAGGCGGATGATGGATTTTACAATC
ACCACAAAGCCCTTGAGGGGCGGCGCGGGGGAGGCGACTTGGCCGCCGCT
TGTCGAGGGCAACCAAACGTGTATGTTTCGTGTATGTATCATTGAATCGT
CGGCCATACGTCTCTCCCAAGACGGAGTGGTAGTGTCCAAGGAAGGCTGG
AGGAGTATATCGTCCCTCGTCGCGTGTCTGTTCCTTGGGCGATTTGACCA
TGCACCCCTTTGACATGAAGAAGTAACCCGTTCCTATTTTCAAGATCGGC
TGAGCCTGTATTGAGCGTGGCCGTTGCTTTGCCGCACATGGTTTGGTGGG
TTTTCCTGTGATGCGGCACTGCTGTAAGCTGTTTGCATGCCCCCCCCGGG
ACTCCTCCTTAGCGACGTCCCAAGCTAAACCGCCGTCATGCGCGGATCTT
GTGAAGTAAGCTAGAATATGTCGGGGTTTTCCCTTCGCCTAACCCGCTGC
CGTGCGCGTTGCTTTTTTGGCACACGAAACAAACGTCGCGCAGGTGAAAT
CGGGGACATATGACTTCGAGGCCAACAAGGCCTTGCTTAAGCTCTACCAA
TTCTTTCCGGACCTCTGCCAGCCGGAGAAGGTTGCTCTCGTTCTCGCGAA
GGTGCATACAGTAGGTCATCACTAGCACCAACATCCCCCCGCCTTGACAC
AAGCTAGCGGTGGGTCTACCTGATTCAACGATGCAGCAAGGTCGACCGAT
TAGGTTTTCTGGACGCGGCTATGATTTTGTCCGCTGTAAATCTGGTGCTG
CTATGCATGTAGCTCATTTGGCCCTACAGCATGGGGGGGCGTACTCTTAT
GTTTTGCATGCCTTAGCAGTTAGACCATTGACCACGCATCCTCGAGAGGA
CGTAGCCTTGTTCCCACAGGACCGATCACCGATGGCCAATCGTTCCTCCC
TACTTTACCAAAGGTGTGTCAGCGTGGGAGGGGGTCGACATAAGGCGGAG
GGGGGCTGCTGAAAGCGACCGCCTTGTATCGAGGAACCGCCTCCTTCAAC
GTATATGTAACAGCTTGATTAGTCTAGCTGTGCCAACGGTTTTCAGCAAC
ACTTGGTCGCCCCCCCCTACCGTACATTGCTTGGCCAACAATTCCCGACC
GCCTACTTCTGTATTGTTTCAAAGGGGTGCCATGTCGACGCCGCCGCGAG
AGGCAAACTACCACCACATACCCTCCCTCCCGCTCGCCGATATCATTCCA
GGCGCTGATGAACGTGCCGAGCACGGACTTCATGGCCTTGATGTACATCG
TGCCGCCGAACCTGCACCGGTGCGAACCTGTGCACTCGCTAAAGAGGGCG
GCGGACTCGTTGGAGACGGCCAAATTTGTCGACTTTTGGCAGGTGAGAGC
AGACAAGAGACAAGAATGATGACACTCCTGCACCTGTTCGAAAACCCTCG
AAGTTTTGTGCCAGTGGTTGTGAAGGTGGTTGCAGAAGCCCTCACGTCCA
ATTGTTTGTGACGATTTCATCACTTCTCCTCCGAGAGTTGCGTGCTGATC
CTGCTCAGAAAGAGACGACCTGCGTGGCAACAGGCCATCCCCTCCCAGAC
GCCGAAACGATTTTTTTCGTAAGCCAATCACGGACGCCATGCCGGAAGCC
CCGGTAGTCTATGTAGTTGGTATCCTCGAAGACCTTCTAGTGGTGAGGGT
CAGGGGTTCGAATCCCGGCGTACGCGAGCTTTTCGTGCAAAGTGGGTTTT
CTCTCGCTTCCGTTTCTGGCCTGGGTGGAAAGCGGTAGTTCGTGTGTACA
CACAGAGGGAAGAGAGTGCTGCGCTCTTCTCGCATGAACAATCGAAGGCA
AAGTACCGCAGGAGGGGTGGTTAGGGGGAAACCCTTCTGTGTGACCACGG
GTTGGAGTAAATGGCACAAATGCTGTGAGCGCTGATTTCAAGTGAAGCAA
AAAAAAATCACGGTAGTGGATATATTCGCTTGAATTGTATCTTCCTGACA
CAGCCATTGTTCACCTTCTTGGTCTTCGGTGCGGCAGACCTGCGCGGACG
GGGACATGCCAGCCTTGATAGAGAGCGTACCCGGGTTCAAGAAGCACATG
CGTGTGTTTATCGTCCACACCCTGGCCACAACCTTCCAAGACTCGACGCG
ACAGAACATGGAGCAGTGCCTCGACTTGGTGAGCGACTTGCCTTCCTGAC
ATCAAGAGATATTTTTGAAGTGTAGTATCCTTGTTTGTCGGGGTCACTGC
TTTTTTTACTATTTACTGTAGTAGTAGTGAATGGTGCGATGTTGCTGACA
GAACCGTGGTGGAAGAGGCGAGTGTTTTTTTCTCTGCAAGAGAGAAGCTC
AAGCAAAAAAGGTTACAACAATTCCGGCGGTGCTTGAGCTCTTGTCTTCT
TGCAGTGGGTGAGAATGGTTGATCACCTGTCGGGACGGCGCCAGCCCTCG
ACTTTCGATTCTCAGGACATCACCAACATCAGTTGAAAATGTTTTCAGTA
AATCTGATCGTAGATGTCCTCTCGGAGCAAAAAAGTTCTCCAGCCGCCGA
GCCCGTTGCCGAGAGTCGGTGTTCCGTGGCGTGCTGCAACTGACTTCGAA
CCCACCGCTTCTGCTATCGACTTTTTCTCCCTTTCCTCGGGATACAGTAA
AAGTGTCTCACTTCTTTAACGCATGACCGGGTTCTTCGTGTTTTTTCTTG
CTGAACGTCTCTCCCCAACGACGATGCCAAACCAACTCTCCCCCGTGTTC
CCGCGTTGACCCAAACCGCCCACCACCGCTTCTTCTCCTTTTGTGTGTTT
TGCTTGCGGCCTCGCGACGTGGCATGCTTGCCGCTGTGGTCCTTTCAGGA
CGGAGCCGAGCTAGCGTCGTTTGTGGAGGCGAACGCGGACGTCGTATCGG
CGTCGCCGGACGGATCAAAGGTAAGACGCGGCCCCTCTCAAGTACCACTC
ATTGTTTATTTGCCTTCCCTTTTGACCTTTGTTTGGTTGTTTCGCCGGGG
TAATGGGGATGCAAGGCCCGACCGCATCACCTCCACGTGGTCCCTGGGTG
TGGGCGTGTGATTATTGCGGACGTCAATCCCCACATTAAAAAAAAATGGA
CGATTTCATCCGTTTATGAAGAGAGAGAGAGCGACCAGCCTTGGGACAGA
GTCGATGCGAAATCTCCCGAATCGCCATGAACAAAATTGTTCGTGATTTC
AGACGGGAGTGTTGAGCCAGGCAGCCGCCAGTGCGGGCAATGGTCGGTGC
ACCTTTGAAGGCAATGTTAATCATTCGCTGTTGTCGCTCCCCCCCACGAG
AGTAGCCCCTCCTGTTTGGTTTCTTCATCGCTTCTCACGCGCGTACCCTG
TTTGTCATTCCCTGCATTTGAAACCCAACAGCAGTGAGTAGTGCTCATGC
ACAAGCAGTTTGTCTTTTCGTGGGCTGTAGAACGGTACTCGTTGGACGTT
GTTTGGTTATCCATCTGCAACTTGTACTTTGCAGGGGTGCGACCCTTATC
ACACTCCGAGAGACTCCTGCTGTTTCGTGTATGATTGGACCCACCATACC
CGGGTCGCAACGACACAAAGACGCGATCTGATATATTTTTCCCAGGGCTG
TTGTGTTGCATGCACATCGACGTCAGAATGGCTCACAGTACCTCAGTTCG
ACCCTGTTCCTCCTTGTTTCGTCTTGGGTGCAGTTCAAGTTTGCTCTGAA
CGAGTTCAACCAGATTCAGCCCAAGAAGTTCAAGGAGTCGGTGGAGTTCG
ACAAGATTCTCAAGACCATCGACAAGCTTTCCAGCTTTTAAACGACGACC
CTGCCGGCCGCTGAAGTAGTAGTCCCTGAACAGCAGGAACAGTAGTAGTC
TCCAATTGTGGGGGCCTAGGACAAGTTGGTTCACACATAGAAGCGTTTGA
GAGGTGTGAAGCTAGACGGCCGAGTGTGGAAAGTACGTACTTGTTCGTAC
GTGCACGAATTGGACTTGCGTGGTATTCTTGACGACGACCGAGGAAAGAT
CTCCAACGTTTTTCGCGACGAAGGTGACGGCATGCACTGCGGAAGACCTC
TTCTGTGGGACCCCTGGATAGTTGTGCCTCGGTATAAACGAAAAACAGAC
CGCAAGGGGGGCAGAAAGTGCGAGGCAAAAGGTGTGGGTTGTTCGAACGC
ACTTCTCTCTATGGAGATTCCGGAAAGAGGAGCACCGTCCGAAGATTGGA
GGCATGGCACGTCGAAAGGCTATTGCTGCCGTAGTAGCGCTTGGCGAATC
TAAAAGAACACCGTGTCTGGCGAGCCCTTTGGAAATCGAGAAAAGGAAGC
GAAAAAGTGAAATGGGTCACTAGCTCTTGCCTTTATGGGTGTTGTCACAA
CGGCAGCGTGTCAGTTTCCACGTGATGCTGGCCCTTTCAACTGTACCCGG
TAAGGAGCCTTCACGACG
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:638323..644440-

>mRNA_Ecto-sp6_S_contig100.767.1 ID=mRNA_Ecto-sp6_S_contig100.767.1|Name=mRNA_Ecto-sp6_S_contig100.767.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=687bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:638323..644440- (Ectocarpus species6 EcLAC_371)
ATGCCGCTGGAACAAATGGACTTCCCGGCGTCGTACGAGGCTTTGAGGCC
GGTCGTGGAGCACGAGTACTTCGACCACAGGGCGGTGCCCCAGCTGGAGG
AGTATCTTGAAGAGCAGGTGAAATCGGGGACATATGACTTCGAGGCCAAC
AAGGCCTTGCTTAAGCTCTACCAATTCTTTCCGGACCTCTGCCAGCCGGA
GAAGGTTGCTCTCGTTCTCGCGAAGGCGCTGATGAACGTGCCGAGCACGG
ACTTCATGGCCTTGATGTACATCGTGCCGCCGAACCTGCACCGGTGCGAA
CCTGTGCACTCGCTAAAGAGGGCGGCGGACTCGTTGGAGACGGCCAAATT
TGTCGACTTTTGGCAGACCTGCGCGGACGGGGACATGCCAGCCTTGATAG
AGAGCGTACCCGGGTTCAAGAAGCACATGCGTGTGTTTATCGTCCACACC
CTGGCCACAACCTTCCAAGACTCGACGCGACAGAACATGGAGCAGTGCCT
CGACTTGGACGGAGCCGAGCTAGCGTCGTTTGTGGAGGCGAACGCGGACG
TCGTATCGGCGTCGCCGGACGGATCAAAGTTCAAGTTTGCTCTGAACGAG
TTCAACCAGATTCAGCCCAAGAAGTTCAAGGAGTCGGTGGAGTTCGACAA
GATTCTCAAGACCATCGACAAGCTTTCCAGCTTTTAA
back to top