mRNA_Ecto-sp6_S_contig100.763.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig100.763.1
Unique NamemRNA_Ecto-sp6_S_contig100.763.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig100.763.1 vs. uniprot
Match: D8LRN5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN5_ECTSI)

HSP 1 Score: 203 bits (517), Expect = 7.470e-60
Identity = 109/114 (95.61%), Postives = 110/114 (96.49%), Query Frame = 1 
Query:    1 DIQRLTDELTVLNQQSSRNMHMREYADRFAERAVIATAGGSTNAAAALGVSDNGPAPRVEDVGKALDWWAARAVQTDAEVHRLELEGRRLKEVITRLHKRPATSTTSARVPKAT 342
            DIQRLTDELTVLNQQSSRNMHMREYADRFAERAV ATAGGSTNAAAALGVSDNGPAPRVEDVGKALDWWAARAVQTDAEVHRLELEGRRLKE IT LHKRPATS+ SARVPKAT
Sbjct:  121 DIQRLTDELTVLNQQSSRNMHMREYADRFAERAVTATAGGSTNAAAALGVSDNGPAPRVEDVGKALDWWAARAVQTDAEVHRLELEGRRLKEAITELHKRPATSSASARVPKAT 234
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BLAST of mRNA_Ecto-sp6_S_contig100.763.1 vs. uniprot
Match: D8LRN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN7_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 4.780e-31
Identity = 70/108 (64.81%), Postives = 82/108 (75.93%), Query Frame = 1 
Query:    1 DIQRLTDELTVLNQQSSRNMHMREYADRFAERAVIATAGGSTNAAAALGVSDNGPAPRVEDVGKALDWWAARAVQTDAEVHRLELEGRRLKEVITRLHKRPATSTTSA 324
            DIQRLT+ELT+L+QQ SRN+ +R YADRFA   +  TAGGS NAAA  GVS++GP P+VEDVGKALDWW  RAVQTDAE HRLELE +RL E I  L K  + S  +A
Sbjct:  115 DIQRLTNELTILSQQCSRNVQLRWYADRFA---MTTTAGGSANAAATPGVSNDGPGPKVEDVGKALDWWTTRAVQTDAEQHRLELERQRLTEAIAELQKPSSASNVAA 219
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BLAST of mRNA_Ecto-sp6_S_contig100.763.1 vs. uniprot
Match: D8LRN8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN8_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 4.580e-17
Identity = 52/97 (53.61%), Postives = 55/97 (56.70%), Query Frame = 1 
Query:    1 DIQRLTDELTVLNQQSSRNMHMREYADRFAERAVIATAGGSTNAAAALGVSDNGPAPRVEDVGKALDWWAARAVQTDAEVHRLELEGRRLKEVITRL 291
            DIQ+LTDELTVLNQQSSRN H+RE                                  VEDVGKALDWW A+A QTDAE HRLELEGRRLK  I  L
Sbjct:  117 DIQKLTDELTVLNQQSSRNSHVRE----------------------------------VEDVGKALDWWTAKAEQTDAEQHRLELEGRRLKNAIAEL 179
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BLAST of mRNA_Ecto-sp6_S_contig100.763.1 vs. uniprot
Match: D8LRN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN6_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 1.390e-15
Identity = 50/94 (53.19%), Postives = 53/94 (56.38%), Query Frame = 1 
Query:    1 DIQRLTDELTVLNQQSSRNMHMREYADRFAERAVIATAGGSTNAAAALGVSDNGPAPRVEDVGKALDWWAARAVQTDAEVHRLELEGRRLKEVI 282
            DIQRLTDELTVLNQQSSRN  MRE                                  VEDVG ALDWW A+A QTDAE HRLELEGRRL++ I
Sbjct:  116 DIQRLTDELTVLNQQSSRNSRMRE----------------------------------VEDVGNALDWWTAKAEQTDAEQHRLELEGRRLQKAI 175
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LRN5_ECTSI7.470e-6095.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRN7_ECTSI4.780e-3164.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRN8_ECTSI4.580e-1753.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRN6_ECTSI1.390e-1553.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig100contigEcto-sp6_S_contig100:597147..598047 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score207.2
Seed ortholog evalue4e-51
Seed eggNOG ortholog2880.D8LRN5
Model size347
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515
Exons3
EggNOG free text desc.Domain of unknown function (DUF4139)
EggNOG OGs28Q1A@1,2QWQ0@2759
Cds size345
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348727.5473707-CDS-Ecto-sp6_S_contig100:597146..5972181682348727.5473707-CDS-Ecto-sp6_S_contig100:597146..597218Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 597147..597218 +
1682348727.5579572-CDS-Ecto-sp6_S_contig100:597537..5977311682348727.5579572-CDS-Ecto-sp6_S_contig100:597537..597731Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 597538..597731 +
1682348727.5751605-CDS-Ecto-sp6_S_contig100:597966..5980451682348727.5751605-CDS-Ecto-sp6_S_contig100:597966..598045Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 597967..598045 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig100.763.1prot_Ecto-sp6_S_contig100.763.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig100 597147..598045 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig100.763.1

>prot_Ecto-sp6_S_contig100.763.1 ID=prot_Ecto-sp6_S_contig100.763.1|Name=mRNA_Ecto-sp6_S_contig100.763.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=115bp
DIQRLTDELTVLNQQSSRNMHMREYADRFAERAVIATAGGSTNAAAALGV
SDNGPAPRVEDVGKALDWWAARAVQTDAEVHRLELEGRRLKEVITRLHKR
PATSTTSARVPKATK
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mRNA from alignment at Ecto-sp6_S_contig100:597147..598047+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig100.763.1 ID=mRNA_Ecto-sp6_S_contig100.763.1|Name=mRNA_Ecto-sp6_S_contig100.763.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=901bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:597147..598047+ (Ectocarpus species6 EcLAC_371)
GATATCCAGAGGCTGACAGACGAGCTCACCGTCCTGAACCAGCAGTCGTC
TCGAAACATGCATATGCGAGAGGTATGTTAATGTGAACCGACGTGCTGTT
GATCGATGATAGTACGTCTGCTGCGTGGAGCGCCTTGACCCAGGGTGTGG
TTGCTTGATTGGTCGAATCAGGAACGGGGAGCAGCACGGCAAGAACGCTG
CAGCACCATTATAATAGCTGTCCTCGGCACAGCCATTGCTCTCCATTCTA
GCGTCGGAGCACCCAAGTGCGTTCTTTGTTGCTTCTTCTGCCACGACATT
TTTGTATTTTGTTTTTTTGCTTCCTCAGGTTGTCCTCCTGAAAGCAACGA
TCATAACCTTACTATGCTTGCGGTATTCTGATGTGTTTCAGTACGCCGAT
CGCTTCGCCGAGAGGGCCGTGATCGCTACCGCTGGAGGGAGCACCAACGC
TGCTGCCGCTCTGGGCGTCTCCGACAACGGACCAGCCCCGAGGGTGGAGG
ACGTGGGCAAGGCTCTGGATTGGTGGGCGGCCAGAGCGGTACAAACAGAC
GCAGAAGTACATCGACTCGAGCTAGAGGGCCGACGGTACGGCACAGGGCT
TTGGCTTGCTTGCCGGGTGTTTCCTTTCAAACAATATACCATGCGATGTG
CTAGTGTCTTCTCAGGAGCGACGGTTGTATTCTTGGCCTCGCTTCACCTG
GTGTTGCTAGTAAACCAACAAATGAATTACGTGCGCATCGGTACGTTTGG
CCTCTGTTGACTTCAACAAAACATCACGTCATCCACATGAACATGACCCC
ACGTACCCGGCGACGAACAGCCTGAAGGAAGTCATCACCAGGCTCCACAA
ACGTCCGGCCACCTCAACTACTTCCGCGCGTGTTCCGAAAGCAACGAAGA
A
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:597147..598047+

>mRNA_Ecto-sp6_S_contig100.763.1 ID=mRNA_Ecto-sp6_S_contig100.763.1|Name=mRNA_Ecto-sp6_S_contig100.763.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=345bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:597147..598047+ (Ectocarpus species6 EcLAC_371)
GATATCCAGAGGCTGACAGACGAGCTCACCGTCCTGAACCAGCAGTCGTC
TCGAAACATGCATATGCGAGAGTACGCCGATCGCTTCGCCGAGAGGGCCG
TGATCGCTACCGCTGGAGGGAGCACCAACGCTGCTGCCGCTCTGGGCGTC
TCCGACAACGGACCAGCCCCGAGGGTGGAGGACGTGGGCAAGGCTCTGGA
TTGGTGGGCGGCCAGAGCGGTACAAACAGACGCAGAAGTACATCGACTCG
AGCTAGAGGGCCGACGCCTGAAGGAAGTCATCACCAGGCTCCACAAACGT
CCGGCCACCTCAACTACTTCCGCGCGTGTTCCGAAAGCAACGAAG
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