mRNA_Ecto-sp6_S_contig100.758.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig100.758.1
Unique NamemRNA_Ecto-sp6_S_contig100.758.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig100.758.1 vs. uniprot
Match: D7FRL4_ECTSI (U6 snRNA phosphodiesterase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRL4_ECTSI)

HSP 1 Score: 483 bits (1243), Expect = 1.220e-169
Identity = 247/258 (95.74%), Postives = 253/258 (98.06%), Query Frame = 2
Query:   14 MDHLLEAYASSSSDDEKIGEKDPKPSVLGGLPSELLTIFKDSASRHDSLRAATEYDLATERRRAKERAGNTRWVRRFPHERGNWPTHVFIPVPNSAAFKSMAEASVSHFRQRLATAWRQGHGRAEGGKGGKKRTRDGRQRSNQASASSAGKLDPPEVVMNDMDPSGRQHLSLSKTTALRAHQIDPFVRGLKEAVKSSRSFTASFVSGYDVLVNEDKTRSFVCLRVRGGRQMVLNLIAKVDPLMRRFKQSEYYEEPIVH 787
            MDHLLEAYASSSS+DEKI EKDP PSVLGGLPSELLTIFKDSASRHDSLRAATEYDLATERRRA+ERAGN RWVRRFPHERGNWPTHVFIPVPNSAAFKSMAEASVSHFRQRLATAWR+GHGRAEGGKGGKKRTRDGRQRSNQASASSAGKLDPPEVVMNDMDPSGRQHLSLSKTTALRAHQI+PFVRGLKEAVKSSRSFTASFVSGYDVLVNEDKTRSFVCLRVRGGRQMVL+LIAKVDPLMRRFKQSEYYE  I+H
Sbjct:    1 MDHLLEAYASSSSEDEKIEEKDPNPSVLGGLPSELLTIFKDSASRHDSLRAATEYDLATERRRAEERAGNIRWVRRFPHERGNWPTHVFIPVPNSAAFKSMAEASVSHFRQRLATAWREGHGRAEGGKGGKKRTRDGRQRSNQASASSAGKLDPPEVVMNDMDPSGRQHLSLSKTTALRAHQINPFVRGLKEAVKSSRSFTASFVSGYDVLVNEDKTRSFVCLRVRGGRQMVLSLIAKVDPLMRRFKQSEYYEVIIMH 258          
BLAST of mRNA_Ecto-sp6_S_contig100.758.1 vs. uniprot
Match: A0A6H5K6W9_9PHAE (U6 snRNA phosphodiesterase 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6W9_9PHAE)

HSP 1 Score: 403 bits (1035), Expect = 1.840e-137
Identity = 283/357 (79.27%), Postives = 293/357 (82.07%), Query Frame = 2
Query:   14 MDHLLEAYASSSSDDEKIGEKDPKPSVLGGLPSELLTIFKDSASRHDSLRAATEYDLATERRRAKERAGNTRWVRRFPHERGNWPTHVFIPVPNSAAFKSMAEASVSHFRQRLATAWRQGHGRAEGGKGGKKRTRDGRQRSNQASASSAGKLDPPEVVMNDMDPSGRQHLSLSKTTALRAHQIDPFVRGLKEAVKSSRSFTASFVSGYDVLVNEDKTRSFVCLRVRGGRQMVLNLIAKVDPLMRRFKQSEYYEEPIVHVSVASVLGDVSTYVSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVPSEVCLPVDVVMCK 1084
            MDHLLEAYASSSSDDEKI E DPKP+VLG LPSELLT+FKDS           EYDLATERRRA+ERAGN  WVRRFPHERGNWPTHVFIPVPNS+AFKSMAEASVSHFRQRLA AWR  HGRAEGGKGG+KRT DGR+RSNQASASSAGKLDPPEVVMN+MDPSGRQHLSLSKTTALRAHQIDPFV+GLK+AVKSSR                         RVRGGR+MVL LIAKVDPLMRRFKQS YYEEPIVHVSVASVLGDVSTYVSS      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          DVPSEVCL VDVVMCK
Sbjct:    1 MDHLLEAYASSSSDDEKIEENDPKPAVLGALPSELLTLFKDS-----------EYDLATERRRAEERAGNIPWVRRFPHERGNWPTHVFIPVPNSSAFKSMAEASVSHFRQRLAAAWRDRHGRAEGGKGGRKRTSDGRRRSNQASASSAGKLDPPEVVMNNMDPSGRQHLSLSKTTALRAHQIDPFVQGLKDAVKSSR-------------------------RVRGGRKMVLGLIAKVDPLMRRFKQSGYYEEPIVHVSVASVLGDVSTYVSSSSRVPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISSD------DVPSEVCLTVDVVMCK 315          
BLAST of mRNA_Ecto-sp6_S_contig100.758.1 vs. uniprot
Match: A0A836CMF3_9STRA (U6 snRNA phosphodiesterase 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMF3_9STRA)

HSP 1 Score: 111 bits (278), Expect = 4.900e-24
Identity = 80/240 (33.33%), Postives = 108/240 (45.00%), Query Frame = 2
Query:  236 RRFPHERGNWPTHVFIPVPNSAAFKSMAEASVSHFRQRLATA----------------------------------WRQGHGRAEGGKGGKKRTRD-------GRQRS----------NQASASSAGKLDPPEVVMNDMDPSGRQHLSLSKTTALRAHQIDPFVRGLKEAVKSSRSFTASFVSGYDVLVNEDKTRSFVCLRVRGGRQMVLNLIAKVDPLMRRFKQSEYYEEPIVHVSVAS 802
            R  PHERG WP+HV I VP SA  + ++ A++ H   RL  A                                  +  G   A GG  G +           GR  S            A+A        P         +G  HLSLS+  ALRAHQ++PF   L+ A   +R+F       Y+VLVN+D+TRSFVCL+V GG   +L LI +V+  +  F+Q  YYE+P +H+SVAS
Sbjct:   24 RAAPHERGRWPSHVHIAVPPSAELRELSAAAIRHLEARLLRAAQAQQAXXXXXXXXXXXXXXXXXXXAPRVIPHDAFAVGGSSANGGGDGLRAXXXXXXXXXGGRGNSCXXXXXXXXXXXAAAXXXXXXXXPRQGXEGEGGAGGVHLSLSRPFALRAHQLEPFAARLRRAAAGARAFRCEVSGAYEVLVNDDRTRSFVCLKVVGGCAPILALIGRVNEALADFQQQTYYEDPKLHISVAS 263          
BLAST of mRNA_Ecto-sp6_S_contig100.758.1 vs. uniprot
Match: A0A4D9D6D2_9STRA (U6 snRNA phosphodiesterase 1 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6D2_9STRA)

HSP 1 Score: 109 bits (273), Expect = 3.110e-23
Identity = 77/218 (35.32%), Postives = 116/218 (53.21%), Query Frame = 2
Query:  215 AGNTRWVRRFPHERGNWPTHVFIPVPNSAAFKSMAEASVSHFRQRLATAWRQGHGRAEGGKGGKKRTRDGRQRSNQASASS-------AGKLDPPEV--VMNDMDPSGRQHLSLSKTTALRAHQIDPFVRGLKEAVKSSRSFTASFV------SGYDVLVNEDKTRSFVCLRVR-GGRQMVLNLIAKVDPLMRRFKQSEYYEEPIVHVSVASVLGDVS 820
            A    W+R  PH  GNW THV+I VPN+     MA+A V   R+RL        G  EG +  K+   +       A +S        AG+ +  E   + +D + SG QHLSLS+T  LR++ ++PFV  L +A+  +R+FT           G  +LVN+D++RSFV + V  GG   +  ++  VD ++ +++Q  YY   + H+SVA+V GDVS
Sbjct:  132 ASTVDWIRSVPHFEGNWATHVYITVPNTREVVRMAKACVQEARRRLRNVLGTETGGEEGWQEKKELVENDLNPVPSADSSDEDXXXXGAGEEEGRESRHLPSDQETSG-QHLSLSRTVYLRSYHMEPFVADLGKALAWARAFTFRLAWRRGRGGGEGLLVNDDRSRSFVTVPVEEGGEGRLRQVVESVDEVLVKYRQPPYYRGALFHISVAAVKGDVS 348          
BLAST of mRNA_Ecto-sp6_S_contig100.758.1 vs. uniprot
Match: A0A5D6XW39_9STRA (U6 snRNA phosphodiesterase 1 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XW39_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.310e-21
Identity = 68/195 (34.87%), Postives = 90/195 (46.15%), Query Frame = 2
Query:  230 WVRRFPHERGNWPTHVFIPV-PNSAAFKSMAEASVSHFRQRLATAWRQGHGRAEGGKGGKKRTRDGRQRSNQASASSAGKLDPPEVVMNDMDPSGRQHLSLSKTTALRAHQIDPFVRGLKEAVKSSRSFTASFVSGYDVLVNEDKTRSFVCLRVRGGRQMVLNLIAKVDPLMRRFKQSEYYEEPIVHVSVASVLG 811
            W+R F H  GNWP+HV + +    A  + +    VS  +Q L T                                         +V  D    G  HLSLS+   LR  QI PFV  L+ A+K  R F  S ++G  VLVN+++TRSF+ LRV  G + VL  +  VD  M+ F    YYE+PI HVS+AS LG
Sbjct:   57 WIRAFAHVEGNWPSHVHVIIGAGDAELRELCGRVVSRAQQELGTRL--------------------------------------ALVPMDSSELGGVHLSLSRPFTLRYEQITPFVLELRAALKWRRRFVLS-LAGATVLVNDERTRSFLALRVADGEREVLATLKCVDACMKHFALPVYYEDPIPHVSIASCLG 212          
BLAST of mRNA_Ecto-sp6_S_contig100.758.1 vs. uniprot
Match: G4YH94_PHYSP (U6 snRNA phosphodiesterase n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YH94_PHYSP)

HSP 1 Score: 102 bits (253), Expect = 1.410e-21
Identity = 74/230 (32.17%), Postives = 111/230 (48.26%), Query Frame = 2
Query:  137 SASRHDSLRAATEYDL----ATERRRAKERAGNTRWVRRFPHERGNWPTHVFIPVPNSAAFKSMAEASVSHFRQRLATAWRQGHGRAEGGKGGKKRTRDGRQRSNQASASSAGKLDPPEVVMNDMDPSGRQHLSLSKTTALRAHQIDPFVRGLKEAVKSSRSFTASFVSGYDVLVNEDKTRSFVCLRVRGGRQMVLNLIAKVDPLMRRFKQSEYYEEPIVHVSVASVLGD 814
            S S  D +  +T  +L    AT+    ++R    +W R FPH  GNWP+HV I +P +   + MA+ ++   ++ +                G+  T    +      +SS G               G  HLSLS+   L   QI+ FV  L  A+K  + F+ + + G  VLVN+DKTRSF+ LRV  G Q    ++  VD  +  FKQ  YY++PI HVS+AS +G+
Sbjct:   20 SVSSEDEVEESTSVELSAEVATQIGTKRKRPDEPQWKRAFPHVDGNWPSHVRIDIPVTEELREMAKCAIDRAQELV----------------GENVTLVPFEELRLGESSSTGS-------------GGGLHLSLSRAFILTYDQIEGFVDSLHTALKWRQRFSVT-LEGALVLVNDDKTRSFLALRVSAGAQQFNQVLRCVDQCLACFKQPTYYQDPIPHVSIASSMGE 219          
BLAST of mRNA_Ecto-sp6_S_contig100.758.1 vs. uniprot
Match: A0A2Y9DBP5_TRIMA (U6 snRNA phosphodiesterase n=4 Tax=Afrotheria TaxID=311790 RepID=A0A2Y9DBP5_TRIMA)

HSP 1 Score: 99.8 bits (247), Expect = 1.600e-20
Identity = 84/273 (30.77%), Postives = 120/273 (43.96%), Query Frame = 2
Query:   26 LEAYASSSSDDE-KIGEKDP-KPSVLGG------LPSELLTIFKDSASRHDSLRAATEYDLATERRRAKERAGNTRWVRRFPHERGNWPTHVFIPVPNSAAFKSMAEASVSHFRQRLATAWRQGHGRAEGGKGGKKRTRDGRQRSNQASASSAGKLDPPEVVMNDMDPSGRQHLSLSKTTALRAHQIDPFVRGLKEAVKSSRSF--TASFVSGYDVLVNEDKTRSFVCLRVRGGRQMVLNLIAKVDPLMRRFKQSEYYEEPIVHVSVASVLGD 814
            L  Y+SS S+DE + G + P +P   GG      LPS+ L +     +   S     E D A    R          VR FPHERGNW THV++P      F  + +  + H +  +                                        P  V M +       HLSLS++  LR H I PFV+ LK+ + S + F  TA+ V  Y    N++KTR+FV L V  G    LNL+++VD +M  F  + +Y++P  HVS+A  +GD
Sbjct:    6 LVGYSSSGSEDEAEAGARAPARPGAGGGRRDQTPLPSQRLPVPDSVLNMFPSTEEGPEDDGAKHGGR----------VRTFPHERGNWATHVYVPYEAGEEFLDLLDMLLPHAQTCI----------------------------------------PRLVRMEEF------HLSLSQSVVLRHHWILPFVQALKDRMASFQRFFFTANRVKIY---TNQEKTRTFVGLEVTSGHAQFLNLVSEVDRVMEEFDLTTFYKDPSFHVSLAWCVGD 219          
BLAST of mRNA_Ecto-sp6_S_contig100.758.1 vs. uniprot
Match: A0A8K1FRB5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FRB5_PYTOL)

HSP 1 Score: 99.4 bits (246), Expect = 1.860e-20
Identity = 68/201 (33.83%), Postives = 97/201 (48.26%), Query Frame = 2
Query:  215 AGNTRWVRRFPHERGNWPTHVFIPVPNSAAFKSMAEASVSHFRQRLATAWRQGHGRAEGGKGGKKRTRDGRQRSNQASASSAGKLDPPEVVMNDMDPSGRQ-HLSLSKTTALRAHQIDPFVRGLKEAVKSSRSFTASFVSGYDVLVNEDKTRSFVCLRVRGGRQMVLNLIAKVDPLMRRFKQSEYYEEPIVHVSVASVLGD 814
            A + RW R FPH  GNWP+HV I VP +   ++          QR+ TA ++  G                                 EV +  M     + H+SLS+   L   QI+PFV  L+ A+K  R F  + V    VLVN+++TRSF+ L++  G+Q  +  +  VD  M+ F+   YYE+PI HVS+AS LGD
Sbjct:   42 ASSVRWTRAFPHVEGNWPSHVKINVPLTPELQTHC--------QRVITATQRFVG--------------------------------DEVELIPMASEEEELHMSLSRPFVLTYEQIEPFVEALRAALKWRRRFALT-VEEPTVLVNDERTRSFLALQLDAGKQEFVKTVRCVDQCMQDFQLPTYYEDPIPHVSIASALGD 201          
BLAST of mRNA_Ecto-sp6_S_contig100.758.1 vs. uniprot
Match: L5MIK6_MYODS (U6 snRNA phosphodiesterase n=4 Tax=Laurasiatheria TaxID=314145 RepID=L5MIK6_MYODS)

HSP 1 Score: 98.2 bits (243), Expect = 1.930e-20
Identity = 65/196 (33.16%), Postives = 92/196 (46.94%), Query Frame = 2
Query:  233 VRRFPHERGNWPTHVFIPVPNSAAFKSMAEASVSHFRQRLATAWRQGHGRAEGGKGGKKRTRDGRQRSNQASASSAGKLDPPEVVMNDMDPSGRQHLSLSKTTALRAHQIDPFVRGLKEAVKSSRSF--TASFVSGYDVLVNEDKTRSFVCLRVRGGRQMVLNLIAKVDPLMRRFKQSEYYEEPIVHVSVASVLGD 814
            VR FPHERGNW THV++P      F  + +A + H + R+                                         P +V  +       HLSLS++  LR H I PFV+ LKE V S + F  TA  V  Y    NE+KTR+FV L V  G    L+L+++VD +M  F  + +Y++P  H+S+A  +GD
Sbjct:   20 VRTFPHERGNWATHVYVPYEAREEFPDLLDALLPHAQTRV-----------------------------------------PRLVRMEAF-----HLSLSQSVVLRHHWILPFVQALKERVASRQRFCFTADRVKIY---TNEEKTRTFVGLEVTSGHAQFLDLVSEVDRVMEEFDLTTFYKDPSFHISLAWCVGD 166          
BLAST of mRNA_Ecto-sp6_S_contig100.758.1 vs. uniprot
Match: A0A7J7SDP4_MYOMY (U6 snRNA phosphodiesterase n=3 Tax=Myotis TaxID=9434 RepID=A0A7J7SDP4_MYOMY)

HSP 1 Score: 99.0 bits (245), Expect = 3.170e-20
Identity = 75/246 (30.49%), Postives = 105/246 (42.68%), Query Frame = 2
Query:   83 KPSVLGGLPSELLTIFKDSASRHDSLRAATEYDLATERRRAKERAGNTRWVRRFPHERGNWPTHVFIPVPNSAAFKSMAEASVSHFRQRLATAWRQGHGRAEGGKGGKKRTRDGRQRSNQASASSAGKLDPPEVVMNDMDPSGRQHLSLSKTTALRAHQIDPFVRGLKEAVKSSRSF--TASFVSGYDVLVNEDKTRSFVCLRVRGGRQMVLNLIAKVDPLMRRFKQSEYYEEPIVHVSVASVLGD 814
            +P V   LPS+ L +               E D A    R          VR FPHERGNW THV++P      F  + +A + H + R+                                         P +V  +       HLSLS++  LR H I PFV+ LKE V S + F  TA  V  Y    NE+KTR+FV L V  G    L+L+++VD +M  F  + +Y++P  H+S+A  +GD
Sbjct:   35 RPRVQSPLPSQRLPVPDSVLHMFAGTEEGPEDDSAKHGGR----------VRTFPHERGNWATHVYVPYEAREEFPDLLDALLPHAQTRV-----------------------------------------PRLVRMEAF-----HLSLSQSVVLRHHWILPFVQALKERVASRQRFCFTADRVKIY---TNEEKTRTFVGLEVTSGHAQFLDLVSEVDRVMEEFDLTTFYKDPSFHISLAWCVGD 221          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRL4_ECTSI1.220e-16995.74U6 snRNA phosphodiesterase 1 n=1 Tax=Ectocarpus si... [more]
A0A6H5K6W9_9PHAE1.840e-13779.27U6 snRNA phosphodiesterase 1 n=1 Tax=Ectocarpus sp... [more]
A0A836CMF3_9STRA4.900e-2433.33U6 snRNA phosphodiesterase 1 n=1 Tax=Tribonema min... [more]
A0A4D9D6D2_9STRA3.110e-2335.32U6 snRNA phosphodiesterase 1 n=1 Tax=Nannochlorops... [more]
A0A5D6XW39_9STRA1.310e-2134.87U6 snRNA phosphodiesterase 1 n=1 Tax=Pythium brass... [more]
G4YH94_PHYSP1.410e-2132.17U6 snRNA phosphodiesterase n=1 Tax=Phytophthora so... [more]
A0A2Y9DBP5_TRIMA1.600e-2030.77U6 snRNA phosphodiesterase n=4 Tax=Afrotheria TaxI... [more]
A0A8K1FRB5_PYTOL1.860e-2033.83Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
L5MIK6_MYODS1.930e-2033.16U6 snRNA phosphodiesterase n=4 Tax=Laurasiatheria ... [more]
A0A7J7SDP4_MYOMY3.170e-2030.49U6 snRNA phosphodiesterase n=3 Tax=Myotis TaxID=94... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig100contigEcto-sp6_S_contig100:553986..557743 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score487.3
Seed ortholog evalue6.3e-135
Seed eggNOG ortholog2880.D7FRL4
Preferred nameUSB1
Model size1086
Hectar predicted targeting categoryother localisation
GOsGO:0000175,GO:0002376,GO:0002520,GO:0002521,GO:0002573,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008380,GO:0008408,GO:0009987,GO:0010467,GO:0010468,GO:0016070,GO:0016073,GO:0016180,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019219,GO:0019222,GO:0030097,GO:0030099,GO:0030154,GO:0030223,GO:0030851,GO:0031123,GO:0031323,GO:0032501,GO:0032502,GO:0034470,GO:0034472,GO:0034477,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043484,GO:0043628,GO:0044237,GO:0044238,GO:0044421,GO:0044424,GO:0044444,GO:0044464,GO:0045171,GO:0046483,GO:0048513,GO:0048534,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0140098,GO:1901360,GO:1990838
Exons6
EggNOG free text desc.U6 snRNA 3'-end processing
EggNOG OGsKOG3102@1,KOG3102@2759
Ec32 ortholog descriptionU6 snRNA phosphodiesterase Usb1
Ec32 orthologEc-12_002600.1
Cds size1071
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig100.758.1prot_Ecto-sp6_S_contig100.758.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig100 553999..557743 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348727.0948045-UTR-Ecto-sp6_S_contig100:553985..5539981682348727.0948045-UTR-Ecto-sp6_S_contig100:553985..553998Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig100 553986..553998 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348727.1067848-CDS-Ecto-sp6_S_contig100:553998..5541251682348727.1067848-CDS-Ecto-sp6_S_contig100:553998..554125Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 553999..554125 +
1682348727.1160092-CDS-Ecto-sp6_S_contig100:555343..5554901682348727.1160092-CDS-Ecto-sp6_S_contig100:555343..555490Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 555344..555490 +
1682348727.125341-CDS-Ecto-sp6_S_contig100:555707..5558621682348727.125341-CDS-Ecto-sp6_S_contig100:555707..555862Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 555708..555862 +
1682348727.1345873-CDS-Ecto-sp6_S_contig100:556229..5563961682348727.1345873-CDS-Ecto-sp6_S_contig100:556229..556396Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 556230..556396 +
1682348727.1436384-CDS-Ecto-sp6_S_contig100:556896..5570591682348727.1436384-CDS-Ecto-sp6_S_contig100:556896..557059Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 556897..557059 +
1682348727.152315-CDS-Ecto-sp6_S_contig100:557431..5577431682348727.152315-CDS-Ecto-sp6_S_contig100:557431..557743Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 557432..557743 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig100.758.1

>prot_Ecto-sp6_S_contig100.758.1 ID=prot_Ecto-sp6_S_contig100.758.1|Name=mRNA_Ecto-sp6_S_contig100.758.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=357bp
MDHLLEAYASSSSDDEKIGEKDPKPSVLGGLPSELLTIFKDSASRHDSLR
AATEYDLATERRRAKERAGNTRWVRRFPHERGNWPTHVFIPVPNSAAFKS
MAEASVSHFRQRLATAWRQGHGRAEGGKGGKKRTRDGRQRSNQASASSAG
KLDPPEVVMNDMDPSGRQHLSLSKTTALRAHQIDPFVRGLKEAVKSSRSF
TASFVSGYDVLVNEDKTRSFVCLRVRGGRQMVLNLIAKVDPLMRRFKQSE
YYEEPIVHVSVASVLGDVSTYVSSSSSSSSSSRIPSSSSSSSSPGKAPPR
ASPPGVVAREARHRAGGGEGTQEDGSSSSDDEEDSSSSSSDDVPSEVCLP
VDVVMCK
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mRNA from alignment at Ecto-sp6_S_contig100:553986..557743+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig100.758.1 ID=mRNA_Ecto-sp6_S_contig100.758.1|Name=mRNA_Ecto-sp6_S_contig100.758.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3758bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:553986..557743+ (Ectocarpus species6 EcLAC_371)
ACCAGCAACGGCAATGGATCACCTCCTGGAGGCATACGCTAGTAGTAGCT CTGACGACGAAAAAATCGGAGAAAAGGACCCCAAACCTTCGGTCTTGGGC GGACTGCCATCGGAGCTGCTCACCATTTTCAAGGACAGCGGTGAGACCCT CAGAATCACACCATCATCCATTCTCGTAACTTACGCCTGTGTCAAGTGCT GGAGCAACTATTGTACATGTACCGCCTTATTGTTTTCGCTGTGGACTTTC CTTGCTACCCACCTTGATGTAGCAGAATTTCCTTTATCCTTGACGTATTT GTTACTTCAGGATGTACAAGTATATGCCATAATGTATGCATACAACGAGC GAATGCTCTAGGTCTACAGATAGTGCCCGGAGATAAGAAACGTCGAAATC GGCTCGAGCCTCGATTTCTTATTCTGGGCAGAAGGACCACAGCCAAGTTG GTCAATTTCGTAAAACGGATTTCTTCTTACTTTGGGTTGTCCCATCGTGC TGATTCTCCTATTTTCTTATTTCTGACGGCGAGGAAAACAACAACACACC AAAAGCCTTCCTGCAGCATTAAACCGACAGCTGGATGTGGCGAACATTGA GGTTGGTGGAAGTACAGTACACCAGCAGTGGGTAGCGCAGCCCGCGGCGG CGCGGGGGCGCGGGGGGCGCCGCGAAAATAACGACTCTCCACCCCACCAA TAAATTACATCATGGCATGAGCTAGGTAAGGGGTGGGAGCACGGCAGCAG CAGCAGCAGCAGTGGGATGTTTCTTTGGACGCGCTCTCCCAGCTTCTACC CCTTCTTTAGATGTCTTGGGGTATCGCACGATCATGCTTCTTATTGGGAC GGTTCTTCTGTTGTGGCCGAGACTGAGCTGTGTTTCTTAGGCCTGCTTTC TTCTATTCCATAAAAATTTGAGATTTTTTCTCAACTGCGGGCCCATCTTA TGCACCATTAATGCCTACCCCCCTCTGCATGCATACTTAGCACACATAAG ATCTACCGCAGCAGGAAGCCCTCCGGCATACAGAAACTACCACGACCGTT GCTGCGTGCTTATTCTCCCAAGTCTCCAGGCTCTCTCCCCCAGCAATTCT GTCTTGGCCAAAGAAGCCCCCATCTTCTGTATTGGCCACATGCACTTTGA GGACCAGGCCCACGCCGCCGCGTGTGTTTCTATTCAAGACTATCTCTTTC ATCCTGGACAACAGCAATTATACACTCGACTACATGTACCTTTCGCATTC TGGACGACAGCAACTCAACACTAGAACATACTTTCGGTACGCTATCGGAC GGTCGGGTATAAACGCACAATACTGCCAAATTGGCATTTATTTGTAGTTG TAGCACAGCCTCACGACATGATTCGTTACGTGCTGCCACAGAGTACGACC TCGCGACCGAGCGGCGGAGGGCAAAGGAGCGGGCAGGGAACACCCGATGG GTTCGAAGGTTTCCCCACGAGAGAGGGAACTGGCCGACGCACGTCTTCAT TCCAGGTGTGTGTGTGTGTGTGTGTGTGTGTGGCGTTCGTTTTGGCTCCG GGTGCGAAACTGTTACTGTAGTCATCGTCAAAAAGCACAGGGTTTTACCT TACCGCGAACAGCCTCCAGGTTTCGCTCCGAACGTTGCTCAAACCCGGCG GCATTGCTGCATGCTGCGTGCACCGCCCGCGTGACCAAGCACCCCTCCCC TCCTCGGCCCGCCACAATACAGTTCCCAACTCCGCAGCTTTCAAGAGCAT GGCGGAGGCGAGCGTCTCGCACTTCCGGCAAAGGCTGGCTACGGCATGGA GACAGGGGCACGGGCGTGCTGAAGGTGGGAAGGGCGGGAAGAAGCGCACA AGGGATGGCCGGCAGCGTTCCAACCAAGTAAGCAGCAGCAGCAGCAGCAG CAGCAGCAGCAGCATCAGATTAGGTTTTGTGTGTCGCGTCGTCGGCAAGA CGCTTTTCCTGCACCTCCGTCCTTCCAAAGAAGCTGCTGATTGTTTCTGG AGGCCGACGAAAGTGTCCATACTGAATGTCACGACGTTTCCGGCGGCTTG GCGCGTAACGCAAATATTTTGCTTTCAGCTGCTGTTTTTTCCAGAGAGTG CAGGAGGTAGTTTAGTAAGGATGGGTTGTCCTACAGAGAGGAGCGCACGC AACACCTTACGATAAGTGGAACCCATGTTTGACGCCGTTTCAATCGACAA CGTTTTTCTGAAAATGCACCTCTTTTCGTCATCTATGCATATAGGCGAGC GCTTCATCGGCTGGGAAACTTGATCCTCCGGAGGTAGTAATGAATGACAT GGATCCCTCCGGACGACAGCACCTCAGTCTCTCCAAAACGACCGCTCTTC GAGCCCACCAGATAGACCCGTTCGTACGGGGGCTCAAGGAAGCCGTCAAA TCGTCTCGCAGGTGAGGCACCCAGAGTCATTTGGCACCGACTCTTTTTTT TGTGAAGGGTCAGTTTGATGTCACGCTGTTTACGGGGTGTGTTCCCACAA GTGAGCTTGAGGTTTCCTTTCACCTCTGTTTCTTCGCACGTGCGCTGTCG AGAGAGGTCAGAGGACACATCCAGTGCCCCATGCCAGGGGGTTGATTGAC ACTTGAACAGTGTTTTTCTCGTCGGGAACTCGAGTTCCGAAATCTACCAC AAACAAGGGACTGTATGACCCGTCCTTATCACTCTATTCAATTCTCGGTC AGGCGACGCGTTCGTCTCTATGCCAGGAGTTTGTGACGCGTACACATCCA TTTATTCAATTTTCGAAGAGTGCTTTGCTCGTCGGGAAGTCGAATTCCGA AGCAATCCTCGGCCCTTCTCCCGTGAAACTTGTCGCCAAACGGATCCATC CGTCTTGTTTTCTGTTTTTTTTGTTTGTTTGTCCGTGCCGTTAATGCGCG TTTCGGCTCAGTTTCACCGCTTCCTTCGTCTCCGGATACGACGTGCTGGT CAACGAAGACAAAACGCGCTCCTTCGTGTGTCTCAGGGTCAGGGGGGGGC GACAGATGGTTCTCAACCTCATCGCGAAGGTGGACCCCTTGATGAGAAGG TTCAAGCAGTCGGAGTACTACGAGGTGATTATCGTGCACGAGGGGGACCG GACCACCTCTCTTGCTCTCTCTATGCACCCGCCAACTTTCGCCGCCCCTT TTGTCCACCCACTGACCTCCCACGCAGCATCGTCTGAAGTATAAGAGAGG CAGACAGAGCAGACAAACTGCGTCGTGCTTTGCGTATAGCGTGCGTTGCC TTGCCTTCCGTGCAAAACGGGCGCCTACCGAGACAACGTTCGGCAGTCTT GACGGAATGCTTCAGAAGAAGACGACATCGATTAGTCCATAGATTAGAAC CCGCTTCTAAGAGTCGTGGCCGGCGTGTTCCTCCAGTGGAGTCCTCACTC CTGTCCGGCACCCCCTTTCGTTCACCCATGCGTGCCTCACGGACAGGAGC CCATCGTACACGTGAGCGTCGCTTCGGTGCTAGGGGACGTCAGCACGTAC GTCAGTTCCTCCTCCTCCTCCTCCTCCTCCTCTCGCATCCCTTCTTCCTC TTCCTCTTCCTCCTCGCCAGGAAAAGCGCCACCACGTGCTTCGCCACCGG GAGTAGTTGCCAGGGAAGCCCGCCACAGAGCAGGAGGTGGCGAAGGCACC CAAGAGGATGGCAGCAGCAGTAGTGACGACGAGGAAGACAGCAGCAGTAG TAGCAGCGACGATGTTCCGTCGGAGGTTTGTCTTCCGGTCGACGTTGTTA TGTGCAAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:553986..557743+

>mRNA_Ecto-sp6_S_contig100.758.1 ID=mRNA_Ecto-sp6_S_contig100.758.1|Name=mRNA_Ecto-sp6_S_contig100.758.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1071bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:553986..557743+ (Ectocarpus species6 EcLAC_371)
ATGGATCACCTCCTGGAGGCATACGCTAGTAGTAGCTCTGACGACGAAAA
AATCGGAGAAAAGGACCCCAAACCTTCGGTCTTGGGCGGACTGCCATCGG
AGCTGCTCACCATTTTCAAGGACAGCGCCTCACGACATGATTCGTTACGT
GCTGCCACAGAGTACGACCTCGCGACCGAGCGGCGGAGGGCAAAGGAGCG
GGCAGGGAACACCCGATGGGTTCGAAGGTTTCCCCACGAGAGAGGGAACT
GGCCGACGCACGTCTTCATTCCAGTTCCCAACTCCGCAGCTTTCAAGAGC
ATGGCGGAGGCGAGCGTCTCGCACTTCCGGCAAAGGCTGGCTACGGCATG
GAGACAGGGGCACGGGCGTGCTGAAGGTGGGAAGGGCGGGAAGAAGCGCA
CAAGGGATGGCCGGCAGCGTTCCAACCAAGCGAGCGCTTCATCGGCTGGG
AAACTTGATCCTCCGGAGGTAGTAATGAATGACATGGATCCCTCCGGACG
ACAGCACCTCAGTCTCTCCAAAACGACCGCTCTTCGAGCCCACCAGATAG
ACCCGTTCGTACGGGGGCTCAAGGAAGCCGTCAAATCGTCTCGCAGTTTC
ACCGCTTCCTTCGTCTCCGGATACGACGTGCTGGTCAACGAAGACAAAAC
GCGCTCCTTCGTGTGTCTCAGGGTCAGGGGGGGGCGACAGATGGTTCTCA
ACCTCATCGCGAAGGTGGACCCCTTGATGAGAAGGTTCAAGCAGTCGGAG
TACTACGAGGAGCCCATCGTACACGTGAGCGTCGCTTCGGTGCTAGGGGA
CGTCAGCACGTACGTCAGTTCCTCCTCCTCCTCCTCCTCCTCCTCTCGCA
TCCCTTCTTCCTCTTCCTCTTCCTCCTCGCCAGGAAAAGCGCCACCACGT
GCTTCGCCACCGGGAGTAGTTGCCAGGGAAGCCCGCCACAGAGCAGGAGG
TGGCGAAGGCACCCAAGAGGATGGCAGCAGCAGTAGTGACGACGAGGAAG
ACAGCAGCAGTAGTAGCAGCGACGATGTTCCGTCGGAGGTTTGTCTTCCG
GTCGACGTTGTTATGTGCAAG
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