mRNA_Ecto-sp6_S_contig100.755.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig100.755.1
Unique NamemRNA_Ecto-sp6_S_contig100.755.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig100.755.1 vs. uniprot
Match: D7FRL7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRL7_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 2.270e-21
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = 2 
Query:  275 MATWYTIFFAFKACGMRRVTRP*TPGGGREHHASHRRLRFVKP 403
            MATW TIFFAFKACGMRRVTRP TPGGGREHHASHRRLRF+KP
Sbjct:    1 MATWCTIFFAFKACGMRRVTRPWTPGGGREHHASHRRLRFLKP 43
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRL7_ECTSI2.270e-2193.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig100contigEcto-sp6_S_contig100:522355..522789 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size403
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_002570.1
Cds size180
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348726.681316-UTR-Ecto-sp6_S_contig100:522354..5225601682348726.681316-UTR-Ecto-sp6_S_contig100:522354..522560Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig100 522355..522560 -
1682348726.6903176-UTR-Ecto-sp6_S_contig100:522592..5226091682348726.6903176-UTR-Ecto-sp6_S_contig100:522592..522609Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig100 522593..522609 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348726.7006533-CDS-Ecto-sp6_S_contig100:522609..5227891682348726.7006533-CDS-Ecto-sp6_S_contig100:522609..522789Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 522610..522789 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig100.755.1prot_Ecto-sp6_S_contig100.755.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig100 522610..522789 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig100.755.1

>prot_Ecto-sp6_S_contig100.755.1 ID=prot_Ecto-sp6_S_contig100.755.1|Name=mRNA_Ecto-sp6_S_contig100.755.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=60bp
MTINRKEKTKRTRTAGDDIAEIPPYAVTCALGERGVRVGGGSGQCRLALP
AYIICRLGP*
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mRNA from alignment at Ecto-sp6_S_contig100:522355..522789-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig100.755.1 ID=mRNA_Ecto-sp6_S_contig100.755.1|Name=mRNA_Ecto-sp6_S_contig100.755.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=435bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:522355..522789- (Ectocarpus species6 EcLAC_371)
ATGACGATTAATAGAAAAGAGAAAACCAAGAGAACACGTACAGCGGGGGA
TGATATCGCTGAAATCCCGCCTTATGCCGTAACATGTGCTTTGGGGGAGC
GGGGGGTGCGTGTGGGAGGGGGATCGGGTCAGTGCAGATTAGCGCTGCCT
GCATATATCATATGTCGTTTGGGACCGTAAAACAGGCCAGGTGTTGGGTG
CTGCAGGGAGGGGGGAGGGGCGCGCGAAGATGTTTCATTGATGGGGTCTG
ATCAGGCGGGCGCTCGCCTTGAGCATGACGTAGAGAACAAGGTTCGCGAG
GCTGACATGGCGACATGGTATACAATCTTTTTCGCTTTCAAGGCTTGTGG
AATGCGAAGGGTGACGAGGCCGTAGACTCCCGGGGGTGGGCGCGAGCACC
ACGCCAGTCACCGCCGCCTTCGCTTCGTCAAGCCT
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:522355..522789-

>mRNA_Ecto-sp6_S_contig100.755.1 ID=mRNA_Ecto-sp6_S_contig100.755.1|Name=mRNA_Ecto-sp6_S_contig100.755.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=180bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:522355..522789- (Ectocarpus species6 EcLAC_371)
ATGACGATTAATAGAAAAGAGAAAACCAAGAGAACACGTACAGCGGGGGA
TGATATCGCTGAAATCCCGCCTTATGCCGTAACATGTGCTTTGGGGGAGC
GGGGGGTGCGTGTGGGAGGGGGATCGGGTCAGTGCAGATTAGCGCTGCCT
GCATATATCATATGTCGTTTGGGACCGTAA
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