mRNA_Ecto-sp6_S_contig100.746.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig100.746.1
Unique NamemRNA_Ecto-sp6_S_contig100.746.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig100.746.1 vs. uniprot
Match: D7FRM6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRM6_ECTSI)

HSP 1 Score: 355 bits (911), Expect = 8.250e-119
Identity = 238/241 (98.76%), Postives = 240/241 (99.59%), Query Frame = 1 
Query:    1 MSDQATDKHAVADDGEVGIEEEVRDFAARFARLVVSSAFREGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDSGRNPGGSSSLRPGERSALGSYVAEAELSLRGSQRLGAQLEKDAGMLRSKVFPALLENARKLHALYVAIDRVTEEVMPEVDATVKRMEKAVYDLEEMRKEQVDTRAPQGSFGLGLALGAGLWFPQMKEKGVTVPEVFDTDKLFRVEEGGLAPL 723
            MSDQATDK+AVADDGEVGIEEEVRDFAARFARLVVS +FREGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDSGRNPGGSSSLRPGERSALGSYVAEAELSLRGSQRLGAQLEKDAGMLRSKVFPALLENARKLHALYVAIDRVTEEVMPEVDATVKRMEKAVYDLEEMRKEQVDTRAPQGSFGLGLALGAGLWFPQMKEKGVTVPEVFDTDKLFRVEEGGLAPL
Sbjct:    1 MSDQATDKNAVADDGEVGIEEEVRDFAARFARLVVSRSFREGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDSGRNPGGSSSLRPGERSALGSYVAEAELSLRGSQRLGAQLEKDAGMLRSKVFPALLENARKLHALYVAIDRVTEEVMPEVDATVKRMEKAVYDLEEMRKEQVDTRAPQGSFGLGLALGAGLWFPQMKEKGVTVPEVFDTDKLFRVEEGGLAPL 241
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRM6_ECTSI8.250e-11998.76Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig100contigEcto-sp6_S_contig100:465182..466798 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1308
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_002480.1
Cds size726
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348725.6373622-CDS-Ecto-sp6_S_contig100:465181..4656821682348725.6373622-CDS-Ecto-sp6_S_contig100:465181..465682Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 465182..465682 +
1682348725.647978-CDS-Ecto-sp6_S_contig100:465991..4662161682348725.647978-CDS-Ecto-sp6_S_contig100:465991..466216Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 465992..466216 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348725.6571321-UTR-Ecto-sp6_S_contig100:466216..4667981682348725.6571321-UTR-Ecto-sp6_S_contig100:466216..466798Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig100 466217..466798 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig100.746.1prot_Ecto-sp6_S_contig100.746.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig100 465182..466216 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig100.746.1

>prot_Ecto-sp6_S_contig100.746.1 ID=prot_Ecto-sp6_S_contig100.746.1|Name=mRNA_Ecto-sp6_S_contig100.746.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=242bp
MSDQATDKHAVADDGEVGIEEEVRDFAARFARLVVSSAFREGGGAAAADG
GGGGSGSEGGGSATTAAAASATPRPGGAAAAAAAASGDSGRNPGGSSSLR
PGERSALGSYVAEAELSLRGSQRLGAQLEKDAGMLRSKVFPALLENARKL
HALYVAIDRVTEEVMPEVDATVKRMEKAVYDLEEMRKEQVDTRAPQGSFG
LGLALGAGLWFPQMKEKGVTVPEVFDTDKLFRVEEGGLAPL*
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mRNA from alignment at Ecto-sp6_S_contig100:465182..466798+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig100.746.1 ID=mRNA_Ecto-sp6_S_contig100.746.1|Name=mRNA_Ecto-sp6_S_contig100.746.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1617bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:465182..466798+ (Ectocarpus species6 EcLAC_371)
ATGTCGGATCAAGCAACAGACAAACACGCCGTGGCCGATGACGGCGAGGT
CGGGATCGAGGAAGAAGTGAGAGACTTCGCCGCTCGTTTCGCGCGCCTCG
TCGTCAGCAGCGCCTTCCGAGAAGGCGGCGGGGCGGCCGCCGCCGACGGC
GGCGGCGGCGGCAGTGGCAGCGAAGGTGGCGGCAGCGCTACAACCGCGGC
GGCGGCCTCCGCAACTCCGCGTCCAGGAGGCGCTGCTGCTGCTGCTGCTG
CTGCTAGCGGTGACAGCGGTAGGAACCCCGGCGGATCGTCGTCGTTGCGA
CCGGGTGAGCGGAGCGCCCTGGGATCGTACGTGGCGGAGGCCGAGCTCAG
CCTGCGAGGGTCGCAACGGCTCGGGGCGCAGCTCGAGAAGGACGCCGGCA
TGCTGCGGTCGAAGGTGTTCCCGGCCTTACTAGAGAACGCCCGAAAGCTG
CACGCATTGTACGTGGCCATCGACCGGGTGACCGAGGAGGTCATGCCTGA
GGTATGTGTGTGTGTGTGTTGTGTGTTTTCCTTTGACCGCGCTAGCCGGC
TGACCAAGAAGTTACGGCAGTCGTATGGCGGGACAACAGTTTGCGGGCTC
CCCTGACAAGTGCACGTATGTCTCTATGGGTTAGACGACAATTTAGGTGC
ACACGGGCCGTAGCCGGATGTCAGATAAGCTGCGCTCTCGGTCGTTGCTG
AGTACGTCAACAACTAAATACTTGCAGAGAACGACGCTATTATAGTACAA
GTGCTTTGAAATAATGCTCTTGATGAAGCAGTGCTGCTGTCCTCCCGACC
CCCTCGACAGGTGGACGCGACGGTCAAGCGGATGGAGAAGGCCGTCTACG
ATCTCGAGGAGATGAGAAAGGAGCAGGTCGACACGAGAGCCCCGCAGGGG
TCGTTTGGGCTGGGGTTGGCCCTGGGGGCCGGGCTGTGGTTCCCTCAGAT
GAAAGAGAAGGGCGTCACCGTGCCGGAGGTCTTCGACACAGACAAGCTCT
TCCGAGTCGAGGAAGGTGGTTTGGCTCCTCTTTGAGACGAACGGGCAGGG
GGGGCGATCATAAAGACGTTATTTTTTCTTCGCCCTAGACGTGTTGGCTC
TGTAAGAACAATGCATGAAGGCTTCAAACATGACAATCCACATTGTTGAG
GGATCGGGGGCGATTCCGTCACTTCATTTCCGTCGATGTAAAGCGTGTAA
ATTAAGGTGTGACTGTCCAAAATCTGGGTTTGGTTCGTTCTCTCATTTTT
ACTGTTTCCACGTCTCTTTTGGGTGCTTGGGGACCAGCCATCAGCCGCCG
TCCTTCAATTCTTCCACTCTTGTCGTGTATGTATCGCAATGGCCTCGTGG
AAAGGAAAGATTTTGAGACCAACACGAATCTCGTTGGTGGACATGTTCAG
ACTCTTGTAAAGAGACAAGAGTCAGGTGCATCCTAGGTGCATGCTCCGAA
GGAGAATGTTAGAATGTTACGATCCGCCGCGGCACCTTCGATGCTTTTGA
TCGATCCACGTCCTTTGCCGAAGTGTCCGTTCTCTTCAGGGAGTGAGTGA
TTGCCCAACTAAAAAACTCGGAGCTGGCGCCTGTTGGCTACAAGGATCGC
TGCGAACCAAAGACAAA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:465182..466798+

>mRNA_Ecto-sp6_S_contig100.746.1 ID=mRNA_Ecto-sp6_S_contig100.746.1|Name=mRNA_Ecto-sp6_S_contig100.746.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=726bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:465182..466798+ (Ectocarpus species6 EcLAC_371)
ATGTCGGATCAAGCAACAGACAAACACGCCGTGGCCGATGACGGCGAGGT
CGGGATCGAGGAAGAAGTGAGAGACTTCGCCGCTCGTTTCGCGCGCCTCG
TCGTCAGCAGCGCCTTCCGAGAAGGCGGCGGGGCGGCCGCCGCCGACGGC
GGCGGCGGCGGCAGTGGCAGCGAAGGTGGCGGCAGCGCTACAACCGCGGC
GGCGGCCTCCGCAACTCCGCGTCCAGGAGGCGCTGCTGCTGCTGCTGCTG
CTGCTAGCGGTGACAGCGGTAGGAACCCCGGCGGATCGTCGTCGTTGCGA
CCGGGTGAGCGGAGCGCCCTGGGATCGTACGTGGCGGAGGCCGAGCTCAG
CCTGCGAGGGTCGCAACGGCTCGGGGCGCAGCTCGAGAAGGACGCCGGCA
TGCTGCGGTCGAAGGTGTTCCCGGCCTTACTAGAGAACGCCCGAAAGCTG
CACGCATTGTACGTGGCCATCGACCGGGTGACCGAGGAGGTCATGCCTGA
GGTGGACGCGACGGTCAAGCGGATGGAGAAGGCCGTCTACGATCTCGAGG
AGATGAGAAAGGAGCAGGTCGACACGAGAGCCCCGCAGGGGTCGTTTGGG
CTGGGGTTGGCCCTGGGGGCCGGGCTGTGGTTCCCTCAGATGAAAGAGAA
GGGCGTCACCGTGCCGGAGGTCTTCGACACAGACAAGCTCTTCCGAGTCG
AGGAAGGTGGTTTGGCTCCTCTTTGA
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