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Homology
BLAST of mRNA_Ecto-sp6_S_contig100.737.1 vs. uniprot
Match: D7FRN3_ECTSI (Ubiquitin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRN3_ECTSI) HSP 1 Score: 1119 bits (2894), Expect = 0.000e+0 Identity = 601/634 (94.79%), Postives = 604/634 (95.27%), Query Frame = 1
Query: 406 MVRLPNTATFGELLACAREKRHGALELEGPVYGRDGELDTTLRDGWVRNSCKVDGTLHIGLAVVVSFPRGSQRSLSLTMGPGATIGDVKQRICVDHGIVPSRQGLMICGGAQRLGANVTLKECCVSGVPVGGFSPKGWGELRLELHVAECTTRNSLQQVAMRDSSQGWSASEFRGAVGVGLPSRGTDVLWSPSQPSHLTPSPPVAATYVPQNNEGSSLTTPSSLLRNGASTVETRPAVVEHGSGPYSTVMFALSPSGRALTLTMAPTATVLDAKTQVAAFEGVSPCRQRLLWRGILMEPDGALLRRLGARSGDTLIVGYRVGPGAPPEVMRAVVELEGNAAGDDDAQTADAAISPTHSPSHHRPCGAQRGTVDSSGSSNVDGGIPDQGTSGVESAAVVADGDENNDVVAPXXXXXXXXXXXSGMDVDEPAGAWVNVVRNGGVDVVDGAQRGSGSGEAEQDGNASGAMSSPPSEARSGSEKSGGQRAWWAKRMATRSLKGSRSSNEQGWGATGAAAALRGAVGASPLSASTPSADSTNNSADTRRVRVSPAPAVPFRQNATHGVDRVGWRILRGIGAGGASSVYDSPLSSAAARRQQRFIPSVGRPKLKVWARWKYGRRVPTPPVPPAGDGGGRG 2307
MVRLPNTATFGELLA AREKRHGALELEGPVYGRDGELDTTLRDGWVRNSCKVDGTLHIGLAVVVSFPRGSQRSLSLTMGPGATIGDVKQRICVDHGIVPSRQGLMICGGAQRLGANVTLKECCV GVPVGGFSPKGWGELRLELHVAECTTRNSLQ VAMRDSSQGWSASEFRGAVGVGLPSRGTDVL SPSQPSHLTPSPPVAATYVPQNNEGSSLTTPSSL RNGASTVETRP V EHGSGPYSTVMFALSPSGRALTLTMAPTATVLDAKTQVAAFEGVSPCRQRLLWRGILMEPDGALLRRLGAR GDTLIVGYRVGPGAPPEVMR VVELEGNAAGDDDAQ ADAAISPTHSPSHHRPCGAQRGTVDSSGSSN+DGGIP+QGTSGVESAA VADGDENNDVVAPXXXXXXXXXXXSGMDVDEPAGAWVNVVRNGGVDVVDGAQRGSGSGEAEQDGNASGA SSPPSEARSGSEKSGGQRAWWAKRMATRSLKGSRSSNEQGWGATGA AALR VGAS LSASTPSADSTNNSADTRRVRVSP PAVP QNATHGVDR G RILRGIGAGGASS+YDSP QQRFIPSVGRPKLKVWARWKYGRRVPTPPVP AGDGGGRG
Sbjct: 1 MVRLPNTATFGELLARAREKRHGALELEGPVYGRDGELDTTLRDGWVRNSCKVDGTLHIGLAVVVSFPRGSQRSLSLTMGPGATIGDVKQRICVDHGIVPSRQGLMICGGAQRLGANVTLKECCVWGVPVGGFSPKGWGELRLELHVAECTTRNSLQ-VAMRDSSQGWSASEFRGAVGVGLPSRGTDVLRSPSQPSHLTPSPPVAATYVPQNNEGSSLTTPSSLHRNGASTVETRPTV-EHGSGPYSTVMFALSPSGRALTLTMAPTATVLDAKTQVAAFEGVSPCRQRLLWRGILMEPDGALLRRLGARGGDTLIVGYRVGPGAPPEVMRPVVELEGNAAGDDDAQNADAAISPTHSPSHHRPCGAQRGTVDSSGSSNIDGGIPEQGTSGVESAAAVADGDENNDVVAPXXXXXXXXXXXSGMDVDEPAGAWVNVVRNGGVDVVDGAQRGSGSGEAEQDGNASGATSSPPSEARSGSEKSGGQRAWWAKRMATRSLKGSRSSNEQGWGATGATAALRXXVGASSLSASTPSADSTNNSADTRRVRVSPTPAVPVHQNATHGVDRAGVRILRGIGAGGASSMYDSPXXXXXXXXQQRFIPSVGRPKLKVWARWKYGRRVPTPPVPHAGDGGGRG 632
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 2310 |
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Ec32 ortholog description | Ubiquitin-like |
| Ec32 ortholog | Ec-12_002410.1 |
| Cds size | 2310 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1682348724.8324108-CDS-Ecto-sp6_S_contig100:397924..398025 | 1682348724.8324108-CDS-Ecto-sp6_S_contig100:397924..398025 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig100 397925..398025 + |
| 1682348724.8416302-CDS-Ecto-sp6_S_contig100:398301..398384 | 1682348724.8416302-CDS-Ecto-sp6_S_contig100:398301..398384 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig100 398302..398384 + |
| 1682348724.8503397-CDS-Ecto-sp6_S_contig100:398852..398992 | 1682348724.8503397-CDS-Ecto-sp6_S_contig100:398852..398992 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig100 398853..398992 + |
| 1682348724.8597345-CDS-Ecto-sp6_S_contig100:399258..399609 | 1682348724.8597345-CDS-Ecto-sp6_S_contig100:399258..399609 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig100 399259..399609 + |
| 1682348724.8741248-CDS-Ecto-sp6_S_contig100:399847..400048 | 1682348724.8741248-CDS-Ecto-sp6_S_contig100:399847..400048 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig100 399848..400048 + |
| 1682348724.8819597-CDS-Ecto-sp6_S_contig100:400288..401722 | 1682348724.8819597-CDS-Ecto-sp6_S_contig100:400288..401722 | Ectocarpus species6 EcLAC_371 | CDS | Ecto-sp6_S_contig100 400289..401722 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp6_S_contig100.737.1 >prot_Ecto-sp6_S_contig100.737.1 ID=prot_Ecto-sp6_S_contig100.737.1|Name=mRNA_Ecto-sp6_S_contig100.737.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=770bp
MAGDGFVVIVALEPRPLPSLGLDERFTRIDYTATCTMLDVLEDMARVLRV PTGDLTLLESAGLEAVDLTNTLSEYHGQHTAPCSSVFAGKRHQWPRYVKR QRKEINLKVKHTPVPHQLVTCTVEGGKGRNVLRRAMVRLPNTATFGELLA CAREKRHGALELEGPVYGRDGELDTTLRDGWVRNSCKVDGTLHIGLAVVV SFPRGSQRSLSLTMGPGATIGDVKQRICVDHGIVPSRQGLMICGGAQRLG ANVTLKECCVSGVPVGGFSPKGWGELRLELHVAECTTRNSLQQVAMRDSS QGWSASEFRGAVGVGLPSRGTDVLWSPSQPSHLTPSPPVAATYVPQNNEG SSLTTPSSLLRNGASTVETRPAVVEHGSGPYSTVMFALSPSGRALTLTMA PTATVLDAKTQVAAFEGVSPCRQRLLWRGILMEPDGALLRRLGARSGDTL IVGYRVGPGAPPEVMRAVVELEGNAAGDDDAQTADAAISPTHSPSHHRPC GAQRGTVDSSGSSNVDGGIPDQGTSGVESAAVVADGDENNDVVAPDGGGG DGGGGGSGMDVDEPAGAWVNVVRNGGVDVVDGAQRGSGSGEAEQDGNASG AMSSPPSEARSGSEKSGGQRAWWAKRMATRSLKGSRSSNEQGWGATGAAA ALRGAVGASPLSASTPSADSTNNSADTRRVRVSPAPAVPFRQNATHGVDR VGWRILRGIGAGGASSVYDSPLSSAAARRQQRFIPSVGRPKLKVWARWKY GRRVPTPPVPPAGDGGGRG* back to topmRNA from alignment at Ecto-sp6_S_contig100:397925..401722+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp6_S_contig100.737.1 ID=mRNA_Ecto-sp6_S_contig100.737.1|Name=mRNA_Ecto-sp6_S_contig100.737.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3798bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:397925..401722+ (Ectocarpus species6 EcLAC_371) ATGGCAGGCGACGGATTTGTGGTGATCGTGGCATTGGAGCCTAGGCCACT
GCCAAGCCTTGGTCTCGACGAGCGCTTCACTCGGATCGACTATACAGCCA
CGTGAGCTAACTGCCCCCCGCTGCTTGTGATTGACCCTCGCATTCAATAA
CTGTGTCTACAGTACATATGTACATGTAGCCTCTTTTCATCTGTCATGTG
TCGGGGTCGCGTGAGCGGGACACACGAGCGGTGACAGTCCCTTAATTGTC
AATCGCAACTTCCATCGCGCGTGTACCTCTCTCTCTCTCTCTCTCTCTCT
CCTCGTCAATCACAACTCGTGCGGAAAATGCGGATGGTTCGGCACCACCG
CACCCACCCCCCTTATTGTTCTACCAGATGTACCATGCTCGATGTTCTCG
AGGATATGGCACGTGTGTTGAGAGTGCCGACAGGAGACCTAACTTTGCTG
GAGTCTGCAGGTGTGCATCGTAGTCTAGACTTGCATAGCTAAGTACCCTC
GTAGGACGGTATGTGAACAAGCTTCACAGTTAAGTGGTGTCGAATATTGT
GGCCCTCGACGCTACAGCAGTTGCGTAGGTTGGTTGAACGAAACTACTTG
ATGATGACGTTACTGTCGTCAAAAAATAATTGTCGTAAAACTACTGTACT
CTGTAGAACTATAGCAAGTAAAGCAGAAGAACAATACCTGAAGTGCGTCC
AGAGAATTTCGATTTATCGGAACAATACAACTGAGTTTTTCTGTTCGGCA
TCCCGTGTCAATACCATAGGTGCTCGTAGGCTTAACTTCCCGGCGGCCCT
GTTTCTTAGGTGCATGGAAATCTGTCCGCTATGTAGTAAGGGCGATTTGT
GACAAGCACCGACTTTCGTTCCGCAAGCATGCCGAATTACCAGCCTCTTT
TCTTTCGCGTTTCACTATCATCACGTAGGGCTGGAGGCTGTTGACCTAAC
GAACACACTGTCAGAGTACCACGGCCAGCATACTGCACCATGCTCTTCTG
TTTTCGCTGGAAAGCGCCACCAATGGCCTCGCTACGTCAAGCGGCAGCGG
AAGGAGATCAACTTGAAGGTATCCCGACCAGGGCGATAGGCGACAAAAAG
ATAGTCTACATTGAGCTTTTGTCGCCATGCCTGAAGTACATAGAGCGGGG
CACATTTCCTGAAAGGCGCACATGTCACAGAGGTCGAGGACGGACATATC
CAATACTTTCTCCGAGCACAGGTAGATATTTAGTTCTGTCAACCGCATGC
ATGAAACTTGCTCGGGTGGTTTATCATAGACTGTTACTAAAAATTGTTGC
GTGCTCCGACGTCGTTTTGTTATGATCACGGCAGGTGAAGCACACTCCGG
TACCGCATCAGCTGGTCACATGCACAGTGGAGGGGGGCAAAGGCCGTAAC
GTCCTTCGTCGGGCTATGGTTCGGCTGCCCAACACGGCAACGTTCGGGGA
GCTGCTCGCATGCGCTCGAGAAAAACGACATGGGGCCCTTGAGCTTGAAG
GCCCTGTGTACGGGCGCGATGGTGAACTAGACACCACATTGCGGGATGGT
TGGGTGCGGAATAGTTGCAAGGTTGATGGAACGCTGCACATAGGCCTTGC
GGTCGTCGTTTCGTTTCCTCGTGGAAGCCAGAGGTCGCTGTCTCTCACCA
TGGGGCCAGGCGCCACGATTGGTGACGTGAAACAGGTGAGATTGCCGCGA
CTTGCTTTCAACACCTCAAAGGACTTCCAGTATCTTAGACGAAAGGTGTT
TGTATCGATAGGGGATGCTCATGCGGCAGCCGTAAAGTACCTTCTGAGAC
ATACTGTGAAACCTTCGATATTTCGACAGGTCGTCCAAAGGCATGCACCA
AGAGTAAAGTCGACGCTCTGCTTGATTACCGCCCATCTCACCTGTCCGTT
GTCTCCCAAACTACGTTGCACAGAGGATATGTGTCGACCACGGCATTGTC
CCAAGCCGCCAAGGCTTGATGATCTGCGGAGGGGCGCAGCGACTAGGAGC
TAACGTTACCCTCAAGGAATGCTGCGTGTCGGGGGTTCCTGTGGGAGGGT
TTTCGCCGAAGGGCTGGGGCGAGCTACGTCTTGAGCTCCACGTTGCGGAA
TGCACCACGCGAAACAGCCTTCAGGTAAGAGCCAGCGGTTGGTCACTCTC
GTCTTTGACGTTACGTTAACCTGCATGTGTTACAATGTCCCTCTTCGAGA
TTGAATAGACGCACAGAGCCCAGTACGACTGTAAATGCTTTTGGTAAACC
AGCGCGCCAATCGTGGACGTCTGCGAGACATGCTTTGCTCTCATCTTGCG
CTCGCAGCATCTTGAGGGGCGAACGACCCATTGACCGGTTCTTACTCCCC
CGGTATTAATGTAGCAGGTGGCAATGAGAGATTCAAGCCAAGGATGGTCC
GCCAGCGAGTTCAGAGGCGCCGTTGGCGTCGGTCTTCCATCTCGAGGCAC
CGATGTACTATGGTCCCCTTCGCAGCCCTCTCACCTCACGCCATCACCCC
CGGTGGCGGCCACCTACGTCCCACAAAACAACGAGGGTAGCTCCTTGACG
ACACCGTCATCTTTGCTCCGCAACGGCGCTAGCACGGTCGAGACCCGACC
CGCCGTCGTCGAGCACGGGAGCGGTCCTTACTCAACCGTCATGTTTGCTC
TGAGCCCCTCCGGCCGGGCGCTGACGCTGACCATGGCGCCCACCGCCACG
GTCCTGGACGCCAAGACACAAGTGGCCGCCTTCGAAGGGGTGTCCCCCTG
CCGGCAACGCCTCCTGTGGAGGGGGATCCTCATGGAGCCCGACGGCGCGC
TGCTGAGAAGGCTTGGAGCGCGGAGCGGCGACACGCTGATCGTGGGCTAC
CGCGTCGGCCCTGGAGCCCCACCCGAGGTGATGAGGGCGGTGGTCGAGCT
GGAAGGGAATGCCGCAGGTGACGACGACGCCCAAACCGCGGACGCGGCGA
TAAGCCCTACACATTCCCCGTCCCACCACCGACCGTGTGGAGCTCAACGG
GGGACCGTGGACAGCAGCGGCAGCAGCAACGTCGACGGGGGTATTCCAGA
TCAGGGGACCTCGGGCGTCGAATCTGCAGCGGTTGTAGCGGACGGAGACG
AAAACAACGACGTCGTAGCCCCGGACGGAGGTGGCGGTGACGGTGGTGGT
GGTGGCAGCGGCATGGACGTTGACGAGCCTGCGGGCGCCTGGGTCAACGT
CGTCAGAAATGGCGGGGTCGACGTTGTCGACGGGGCTCAAAGAGGCAGCG
GGAGCGGAGAAGCAGAACAAGACGGCAACGCAAGCGGCGCGATGTCTTCT
CCCCCGTCTGAAGCTCGGTCGGGAAGCGAAAAATCGGGAGGGCAGCGAGC
GTGGTGGGCAAAGAGGATGGCCACGCGGAGCTTGAAGGGAAGCCGGAGCT
CCAACGAGCAGGGCTGGGGTGCCACCGGCGCCGCTGCAGCTCTGCGTGGA
GCGGTGGGCGCATCGCCGTTGTCGGCATCCACCCCTTCTGCCGACTCTAC
CAACAACAGTGCGGACACGCGCCGTGTTCGTGTTTCCCCCGCGCCGGCGG
TACCCTTTCGCCAGAACGCCACCCACGGTGTCGACAGGGTGGGGTGGCGC
ATCCTCCGAGGCATTGGGGCTGGGGGTGCCAGTTCGGTGTATGATTCTCC
TCTTTCGAGTGCAGCGGCCAGGAGGCAGCAGCGATTCATACCGTCGGTCG
GGAGACCGAAGCTGAAAGTCTGGGCGCGTTGGAAGTATGGTCGCCGTGTG
CCCACACCCCCCGTTCCGCCTGCCGGTGATGGTGGTGGAAGGGGGTGA back to topCoding sequence (CDS) from alignment at Ecto-sp6_S_contig100:397925..401722+ >mRNA_Ecto-sp6_S_contig100.737.1 ID=mRNA_Ecto-sp6_S_contig100.737.1|Name=mRNA_Ecto-sp6_S_contig100.737.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=2310bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:397925..401722+ (Ectocarpus species6 EcLAC_371) ATGGCAGGCGACGGATTTGTGGTGATCGTGGCATTGGAGCCTAGGCCACT GCCAAGCCTTGGTCTCGACGAGCGCTTCACTCGGATCGACTATACAGCCA CATGTACCATGCTCGATGTTCTCGAGGATATGGCACGTGTGTTGAGAGTG CCGACAGGAGACCTAACTTTGCTGGAGTCTGCAGGGCTGGAGGCTGTTGA CCTAACGAACACACTGTCAGAGTACCACGGCCAGCATACTGCACCATGCT CTTCTGTTTTCGCTGGAAAGCGCCACCAATGGCCTCGCTACGTCAAGCGG CAGCGGAAGGAGATCAACTTGAAGGTGAAGCACACTCCGGTACCGCATCA GCTGGTCACATGCACAGTGGAGGGGGGCAAAGGCCGTAACGTCCTTCGTC GGGCTATGGTTCGGCTGCCCAACACGGCAACGTTCGGGGAGCTGCTCGCA TGCGCTCGAGAAAAACGACATGGGGCCCTTGAGCTTGAAGGCCCTGTGTA CGGGCGCGATGGTGAACTAGACACCACATTGCGGGATGGTTGGGTGCGGA ATAGTTGCAAGGTTGATGGAACGCTGCACATAGGCCTTGCGGTCGTCGTT TCGTTTCCTCGTGGAAGCCAGAGGTCGCTGTCTCTCACCATGGGGCCAGG CGCCACGATTGGTGACGTGAAACAGAGGATATGTGTCGACCACGGCATTG TCCCAAGCCGCCAAGGCTTGATGATCTGCGGAGGGGCGCAGCGACTAGGA GCTAACGTTACCCTCAAGGAATGCTGCGTGTCGGGGGTTCCTGTGGGAGG GTTTTCGCCGAAGGGCTGGGGCGAGCTACGTCTTGAGCTCCACGTTGCGG AATGCACCACGCGAAACAGCCTTCAGCAGGTGGCAATGAGAGATTCAAGC CAAGGATGGTCCGCCAGCGAGTTCAGAGGCGCCGTTGGCGTCGGTCTTCC ATCTCGAGGCACCGATGTACTATGGTCCCCTTCGCAGCCCTCTCACCTCA CGCCATCACCCCCGGTGGCGGCCACCTACGTCCCACAAAACAACGAGGGT AGCTCCTTGACGACACCGTCATCTTTGCTCCGCAACGGCGCTAGCACGGT CGAGACCCGACCCGCCGTCGTCGAGCACGGGAGCGGTCCTTACTCAACCG TCATGTTTGCTCTGAGCCCCTCCGGCCGGGCGCTGACGCTGACCATGGCG CCCACCGCCACGGTCCTGGACGCCAAGACACAAGTGGCCGCCTTCGAAGG GGTGTCCCCCTGCCGGCAACGCCTCCTGTGGAGGGGGATCCTCATGGAGC CCGACGGCGCGCTGCTGAGAAGGCTTGGAGCGCGGAGCGGCGACACGCTG ATCGTGGGCTACCGCGTCGGCCCTGGAGCCCCACCCGAGGTGATGAGGGC GGTGGTCGAGCTGGAAGGGAATGCCGCAGGTGACGACGACGCCCAAACCG CGGACGCGGCGATAAGCCCTACACATTCCCCGTCCCACCACCGACCGTGT GGAGCTCAACGGGGGACCGTGGACAGCAGCGGCAGCAGCAACGTCGACGG GGGTATTCCAGATCAGGGGACCTCGGGCGTCGAATCTGCAGCGGTTGTAG CGGACGGAGACGAAAACAACGACGTCGTAGCCCCGGACGGAGGTGGCGGT GACGGTGGTGGTGGTGGCAGCGGCATGGACGTTGACGAGCCTGCGGGCGC CTGGGTCAACGTCGTCAGAAATGGCGGGGTCGACGTTGTCGACGGGGCTC AAAGAGGCAGCGGGAGCGGAGAAGCAGAACAAGACGGCAACGCAAGCGGC GCGATGTCTTCTCCCCCGTCTGAAGCTCGGTCGGGAAGCGAAAAATCGGG AGGGCAGCGAGCGTGGTGGGCAAAGAGGATGGCCACGCGGAGCTTGAAGG GAAGCCGGAGCTCCAACGAGCAGGGCTGGGGTGCCACCGGCGCCGCTGCA GCTCTGCGTGGAGCGGTGGGCGCATCGCCGTTGTCGGCATCCACCCCTTC TGCCGACTCTACCAACAACAGTGCGGACACGCGCCGTGTTCGTGTTTCCC CCGCGCCGGCGGTACCCTTTCGCCAGAACGCCACCCACGGTGTCGACAGG GTGGGGTGGCGCATCCTCCGAGGCATTGGGGCTGGGGGTGCCAGTTCGGT GTATGATTCTCCTCTTTCGAGTGCAGCGGCCAGGAGGCAGCAGCGATTCA TACCGTCGGTCGGGAGACCGAAGCTGAAAGTCTGGGCGCGTTGGAAGTAT GGTCGCCGTGTGCCCACACCCCCCGTTCCGCCTGCCGGTGATGGTGGTGG AAGGGGGTGA back to top
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