prot_Ecto-sp6_S_contig100.714.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig100.714.1
Unique Nameprot_Ecto-sp6_S_contig100.714.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length189
Homology
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BLAST of mRNA_Ecto-sp6_S_contig100.714.1 vs. uniprot
Match: D7FKG2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKG2_ECTSI)

HSP 1 Score: 202 bits (514), Expect = 2.600e-64
Identity = 108/109 (99.08%), Postives = 108/109 (99.08%), Query Frame = 0 
Query:   80 MPNEYEAFFNKASRLGADATRDLAPEERAQRAMEGEKLEDEIIEIATVLREKADEMVAETGAINFEIIQPMIDEIAVLKSKYKVVMGATETADGDGAPDADDEEDASSC 188
            MPNEYEAFFNKASRLGADATRDLAPEERAQRAMEGEKLEDEIIEIATVLREKADEMVAETGAINFEIIQPMIDEIAVLKSKYKVVMGATETADGDGAPDADD EDASSC
Sbjct:    1 MPNEYEAFFNKASRLGADATRDLAPEERAQRAMEGEKLEDEIIEIATVLREKADEMVAETGAINFEIIQPMIDEIAVLKSKYKVVMGATETADGDGAPDADDGEDASSC 109
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BLAST of mRNA_Ecto-sp6_S_contig100.714.1 vs. uniprot
Match: A0A835YIM3_9STRA (Uncharacterized protein n=3 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIM3_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 4.180e-10
Identity = 32/65 (49.23%), Postives = 50/65 (76.92%), Query Frame = 0 
Query:  102 LAPEERAQRAMEGEKLEDEIIEIATVLREKADEMVAETGAINFEIIQPMIDEIAVLKSKYKVVMG 166
            ++ EER + A+ GE+LEDEI+  AT LR+ AD MV +TGA++ + ++P+IDEI  LK++Y+ V+G
Sbjct:    1 MSIEERTRLAIIGEELEDEIMSKATALRDLADSMVEQTGAVDEKQLRPLIDEIGELKTQYRAVLG 65
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.714.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKG2_ECTSI2.600e-6499.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YIM3_9STRA4.180e-1049.23Uncharacterized protein n=3 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..20
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..188
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..18
score: 0.703
NoneNo IPR availableTMHMMTMhelixcoord: 5..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig100contigEcto-sp6_S_contig100:227144..228761 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig100.714.1mRNA_Ecto-sp6_S_contig100.714.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig100 227130..229741 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig100.714.1 ID=prot_Ecto-sp6_S_contig100.714.1|Name=mRNA_Ecto-sp6_S_contig100.714.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=189bp
MHPGFVLHLAALPGIAHAFAGGWASFVVGADQHRQQQHRCAVGEPFARAG
SSSRFAGSTRRPPAVAAPGAARTRQQLRLMPNEYEAFFNKASRLGADATR
DLAPEERAQRAMEGEKLEDEIIEIATVLREKADEMVAETGAINFEIIQPM
IDEIAVLKSKYKVVMGATETADGDGAPDADDEEDASSC*
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