mRNA_Ecto-sp6_S_contig100.714.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig100.714.1
Unique NamemRNA_Ecto-sp6_S_contig100.714.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.714.1 vs. uniprot
Match: D7FKG2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKG2_ECTSI)

HSP 1 Score: 203 bits (517), Expect = 1.850e-60
Identity = 108/109 (99.08%), Postives = 108/109 (99.08%), Query Frame = 3 
Query:  252 MPNEYEAFFNKASRLGADATRDLAPEERAQRAMEGEKLEDEIIEIATVLREKADEMVAETGAINFEIIQPMIDEIAVLKSKYKVVMGATETADGDGAPDADDEEDASSC 578
            MPNEYEAFFNKASRLGADATRDLAPEERAQRAMEGEKLEDEIIEIATVLREKADEMVAETGAINFEIIQPMIDEIAVLKSKYKVVMGATETADGDGAPDADD EDASSC
Sbjct:    1 MPNEYEAFFNKASRLGADATRDLAPEERAQRAMEGEKLEDEIIEIATVLREKADEMVAETGAINFEIIQPMIDEIAVLKSKYKVVMGATETADGDGAPDADDGEDASSC 109
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.714.1 vs. uniprot
Match: A0A835YIM3_9STRA (Uncharacterized protein n=3 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIM3_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 4.550e-9
Identity = 32/65 (49.23%), Postives = 50/65 (76.92%), Query Frame = 3 
Query:  318 LAPEERAQRAMEGEKLEDEIIEIATVLREKADEMVAETGAINFEIIQPMIDEIAVLKSKYKVVMG 512
            ++ EER + A+ GE+LEDEI+  AT LR+ AD MV +TGA++ + ++P+IDEI  LK++Y+ V+G
Sbjct:    1 MSIEERTRLAIIGEELEDEIMSKATALRDLADSMVEQTGAVDEKQLRPLIDEIGELKTQYRAVLG 65
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.714.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKG2_ECTSI1.850e-6099.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YIM3_9STRA4.550e-949.23Uncharacterized protein n=3 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig100contigEcto-sp6_S_contig100:227130..229741 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1561
Hectar predicted targeting categorysignal peptide
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_002180.1
Cds size567
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348722.745972-UTR-Ecto-sp6_S_contig100:227129..2271431682348722.745972-UTR-Ecto-sp6_S_contig100:227129..227143Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig100 227130..227143 +
1682348722.782258-UTR-Ecto-sp6_S_contig100:228761..2297411682348722.782258-UTR-Ecto-sp6_S_contig100:228761..229741Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig100 228762..229741 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348722.7547464-CDS-Ecto-sp6_S_contig100:227143..2274821682348722.7547464-CDS-Ecto-sp6_S_contig100:227143..227482Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 227144..227482 +
1682348722.764358-CDS-Ecto-sp6_S_contig100:228045..2281911682348722.764358-CDS-Ecto-sp6_S_contig100:228045..228191Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 228046..228191 +
1682348722.7733178-CDS-Ecto-sp6_S_contig100:228679..2287611682348722.7733178-CDS-Ecto-sp6_S_contig100:228679..228761Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 228680..228761 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig100.714.1prot_Ecto-sp6_S_contig100.714.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig100 227144..228761 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig100.714.1

>prot_Ecto-sp6_S_contig100.714.1 ID=prot_Ecto-sp6_S_contig100.714.1|Name=mRNA_Ecto-sp6_S_contig100.714.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=189bp
MHPGFVLHLAALPGIAHAFAGGWASFVVGADQHRQQQHRCAVGEPFARAG
SSSRFAGSTRRPPAVAAPGAARTRQQLRLMPNEYEAFFNKASRLGADATR
DLAPEERAQRAMEGEKLEDEIIEIATVLREKADEMVAETGAINFEIIQPM
IDEIAVLKSKYKVVMGATETADGDGAPDADDEEDASSC*
back to top

mRNA from alignment at Ecto-sp6_S_contig100:227130..229741+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig100.714.1 ID=mRNA_Ecto-sp6_S_contig100.714.1|Name=mRNA_Ecto-sp6_S_contig100.714.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2612bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:227130..229741+ (Ectocarpus species6 EcLAC_371)
CCACAACAGTGGAAATGCATCCAGGTTTTGTGCTCCACCTCGCCGCCCTC
CCTGGAATAGCCCACGCCTTCGCCGGAGGATGGGCTTCTTTCGTGGTCGG
TGCTGACCAACATCGACAGCAGCAGCATCGCTGTGCTGTTGGTGAGCCCT
TCGCTCGAGCGGGTAGCAGTAGCAGGTTTGCTGGCTCCACGAGACGGCCC
CCTGCTGTTGCGGCGCCTGGAGCAGCACGTACGAGGCAGCAGCTCCGGCT
TATGCCCAACGAGTACGAAGCGTTTTTCAACAAGGCGTCCAGGTTAGGGG
CGGACGCGACGAGAGACCTCGCACCCGAGGAGCGCGCGCAGAGAGCTATG
GAGGCAAGTTGACGTACTGCTGTCATGTGTAGCGTACATCAGAAGTGTAC
ATGACAAAGGTGCAATCAGCCCCCACCTCTCTGCGCTGCTGATGGCCTTC
TTTCCTGAGCAGATTAGTGCATACCTTGAGAGGAAAACCTTGTCTGGGGT
TTGTGTGGTAGAATGGTTGAGGCGAAAGGGTATGTCGCGCTGTTGCACAT
GATGACACAACATGCTCCGTGCGTCGCGCCGATATTTTGAGGAAAGGTTG
GCACCACGTGCATACTGCTGTCTCAGTAGGTAGTTGTAACAGCAGTAACT
ACATGTACAGCAAGTAGCAGCAGTTACCCAGCGACAGCAGTGTGCAGGCA
AAAGTATCCTGAGCTTCCTGCGCCAGACAAAGCTGCAGATGGTACGCGCT
TTAGAAAATGGCCAGATGCTGGAAACGCACAGGTACTTTTCTGACCTATG
AATCCGGAACTGTCCGCTATGCAGATGGTACGCGCAGTAGAAAAATATTT
CAAACCGCTGTGCACTGCTTGTGTGCTGACGAACGCTGCTGGTGTGGTTG
CTTGCTGGTGCTCAAGGGGGAGAAGCTAGAAGACGAAATCATTGAGATCG
CGACCGTGTTGCGAGAGAAAGCGGACGAAATGGTGGCCGAAACTGGCGCC
ATTAACTTCGAGATCATCCAGCCGATGATCGACGAGATCGCCGTCCTGAA
AAGCAAGTACAAGTGAGTGCCGAACACTACAAAACACACAAAAAGACTAG
TCTTTCTTGTGAGGTTTTACTTTACTTTCTAAAAATAGAATGAGGCAACC
AGAAACGCGTGAAACCGAAGATGTTCGTGCAGTCACAAGGCAGAAAAGAG
AGATGCCGCGCCGGACGTATTTAGGAACTGTTGATATCGTTGCTTACACG
TTCCACGTGGGGCTTCTCGTGCTGCTCCTGCGGCTGACACTGTCAGTCCT
TCTGCTCTCGTCTGTTTTTCGTTGTTCTAGTCTGTTGTTTTAATTTTGCG
TTCGAGTGATTTGAACCTCAGTTTTCAGCCGTCTTTGCATACCACACCTC
GAAACATCGCACAAAATTCGACGATTCGACACATTCCCTGGTGGGACCCA
TTGGCACTCATCGCTCGGCGAGCTCGGATGCACGCACACGCTGCTCCACG
CTCTCGCGCATGTTTCAACCCCGACTGGTTCTCTCTACGGAACACTTCAG
GGTGGTGATGGGGGCAACTGAGACCGCGGACGGAGACGGAGCTCCGGATG
CCGATGATGAAGAGGATGCCAGCTCTTGTTGACCTAGACCACTCCTGCCA
GACGCCCATCGTTTCCTCTACGCTGCTAGGGCCGGAGGAAAGCCGTGCCC
GTGGCGGGTGGGTCCCTCGCTTGAAGCATTTGGAGAGGGATGGCGGGGGT
TGCCGAGGGGTGCAATGAGGTGGTAACCCCACCCGCTTGGACTCGCTAGG
GCCGGGTTTCCGCTTGTTTACTCTGATCGGGCTGTCGTTTTGCGCCCTCT
CTTGGAGGCTTCGTGCAGTCGTCCGAAGGTTAGATAGGATTTGGGTTGGC
CGGTTTGCGGTCTTGTTAGCGTGGTACTCGCTAACTATATTTATTCCTTT
TACTCGGGAGCTATGATAGTTTTGTCGTTTCATCGTGTTCTACTGTAGTG
TTTTCGTTTCAAGAGTGTTCATCAGGAGTGTGCAAGGAGTAGTATTGAAT
AGATATTATATCTCACTGCTGCTGCATCGCAATCAAACCGTCTTGGGCCG
CTCCTGGCTTGATTGGCTTCGGCATAAGATGCGCAATCGAAATGACCCAG
GTGTTAGACCATACCTTCCGTGTGGGCGCCGTAGTCTCTTCTTTAGAAGG
GAAATGCTGACATTTCGCACGTAGATCTAGCTGGACAGGATACGATGGAC
TCCCTCACAAGCACCGCACGGGAAGCGGTTGATGATTGTGCGAAACTGCC
GCAGGGCTGAAGGTGCTTTGTCGCACTCGGATTCTCCTTGTCCATGCTGG
GACCTTTCAGAATGGGGACACAACCATGTGTATGAGTGCCGAACACCTTG
AATGTTATCCGTGTAGCGGTCGGTGCCTCCCTACACTGGTGTAGTAGTGT
GACCGTTAGAATGTTTTGTGCTTGCTGCCCCGCTTTTGGAAGCGGTTGTG
TGTTTCGACAGAGCAGCTCGGTCGTGGAGGCGACTGCAGCGTGGTGTTGA
TTTGTGTCACGAGACCGTCGTGTTTGGCTTGTTGGCCCTTGAAATATCCC
CGTCTGATTGTA
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:227130..229741+

>mRNA_Ecto-sp6_S_contig100.714.1 ID=mRNA_Ecto-sp6_S_contig100.714.1|Name=mRNA_Ecto-sp6_S_contig100.714.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=567bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:227130..229741+ (Ectocarpus species6 EcLAC_371)
ATGCATCCAGGTTTTGTGCTCCACCTCGCCGCCCTCCCTGGAATAGCCCA
CGCCTTCGCCGGAGGATGGGCTTCTTTCGTGGTCGGTGCTGACCAACATC
GACAGCAGCAGCATCGCTGTGCTGTTGGTGAGCCCTTCGCTCGAGCGGGT
AGCAGTAGCAGGTTTGCTGGCTCCACGAGACGGCCCCCTGCTGTTGCGGC
GCCTGGAGCAGCACGTACGAGGCAGCAGCTCCGGCTTATGCCCAACGAGT
ACGAAGCGTTTTTCAACAAGGCGTCCAGGTTAGGGGCGGACGCGACGAGA
GACCTCGCACCCGAGGAGCGCGCGCAGAGAGCTATGGAGGGGGAGAAGCT
AGAAGACGAAATCATTGAGATCGCGACCGTGTTGCGAGAGAAAGCGGACG
AAATGGTGGCCGAAACTGGCGCCATTAACTTCGAGATCATCCAGCCGATG
ATCGACGAGATCGCCGTCCTGAAAAGCAAGTACAAGGTGGTGATGGGGGC
AACTGAGACCGCGGACGGAGACGGAGCTCCGGATGCCGATGATGAAGAGG
ATGCCAGCTCTTGTTGA
back to top