mRNA_Ecto-sp6_S_contig100.710.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig100.710.1
Unique NamemRNA_Ecto-sp6_S_contig100.710.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig100.710.1 vs. uniprot
Match: A0A6H5KSZ1_9PHAE (Inorganic diphosphatase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSZ1_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 7.710e-49
Identity = 94/110 (85.45%), Postives = 101/110 (91.82%), Query Frame = 1 
Query:    1 MYTRHDA--AALARERSCNQAEDRTSLREAIEVTSMMVSGRAVATALCALGTTSAFTAPLAGFRAAKGVSRQVTRNVGRNLQMATVAEAYDIKVKGEENTMDYRAFFHQA 324
            ++T+HD   AAL RE+S NQ EDRTSLREAI+ TSMMV GRAVATALCALGTTSAFTAPLAGFRAAKGVSRQVTRN GRNLQMATVAEAYDIKVKGEENTM+YRAFF+QA
Sbjct:   72 VHTQHDTSPAALVREKSYNQ-EDRTSLREAIQATSMMVRGRAVATALCALGTTSAFTAPLAGFRAAKGVSRQVTRNAGRNLQMATVAEAYDIKVKGEENTMEYRAFFNQA 180
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BLAST of mRNA_Ecto-sp6_S_contig100.710.1 vs. uniprot
Match: D7FKG7_ECTSI (Inorganic diphosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKG7_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 8.230e-39
Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 1 
Query:  100 MMVSGRAVATALCALGTTSAFTAPLAGFRAAKGVSRQVTRNVGRNLQMATVAEAYDIKVKGEENTMDYRAFFHQ 321
            MMVSGRAVATALCALGTTSAFTAPLAGFRAAKGVSRQVTRNVGRNLQMATVAE YDIKVKGEENTMDYRAFFHQ
Sbjct:    1 MMVSGRAVATALCALGTTSAFTAPLAGFRAAKGVSRQVTRNVGRNLQMATVAETYDIKVKGEENTMDYRAFFHQ 74
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KSZ1_9PHAE7.710e-4985.45Inorganic diphosphatase n=1 Tax=Ectocarpus sp. CCA... [more]
D7FKG7_ECTSI8.230e-3998.65Inorganic diphosphatase n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig100contigEcto-sp6_S_contig100:192942..195762 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score142.1
Seed ortholog evalue1.5e-31
Seed eggNOG ortholog2880.D7FKG7
Model size325
KEGG koko:K01507
KEGG Pathwayko00190,map00190
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004427,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006950,GO:0006952,GO:0006970,GO:0008150,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009651,GO:0009941,GO:0010035,GO:0010038,GO:0010876,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0019915,GO:0031967,GO:0031975,GO:0033036,GO:0042221,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046686,GO:0050896,GO:0051179,GO:0051235,GO:0051704,GO:0051707,GO:0065007,GO:0065008,GO:0098542
Exons4
EggNOG free text desc.inorganic diphosphatase activity
EggNOG OGsCOG0221@1,KOG1626@2759
EC3.6.1.1
Cds size324
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348722.347657-CDS-Ecto-sp6_S_contig100:192941..1930131682348722.347657-CDS-Ecto-sp6_S_contig100:192941..193013Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 192942..193013 -
1682348722.3577766-CDS-Ecto-sp6_S_contig100:194997..1950601682348722.3577766-CDS-Ecto-sp6_S_contig100:194997..195060Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 194998..195060 -
1682348722.3671758-CDS-Ecto-sp6_S_contig100:195382..1955161682348722.3671758-CDS-Ecto-sp6_S_contig100:195382..195516Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 195383..195516 -
1682348722.3748507-CDS-Ecto-sp6_S_contig100:195707..1957621682348722.3748507-CDS-Ecto-sp6_S_contig100:195707..195762Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 195708..195762 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig100.710.1prot_Ecto-sp6_S_contig100.710.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig100 192942..195762 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig100.710.1

>prot_Ecto-sp6_S_contig100.710.1 ID=prot_Ecto-sp6_S_contig100.710.1|Name=mRNA_Ecto-sp6_S_contig100.710.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=108bp
MYTRHDAAALARERSCNQAEDRTSLREAIEVTSMMVSGRAVATALCALGT
TSAFTAPLAGFRAAKGVSRQVTRNVGRNLQMATVAEAYDIKVKGEENTMD
YRAFFHQA
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mRNA from alignment at Ecto-sp6_S_contig100:192942..195762-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig100.710.1 ID=mRNA_Ecto-sp6_S_contig100.710.1|Name=mRNA_Ecto-sp6_S_contig100.710.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2821bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:192942..195762- (Ectocarpus species6 EcLAC_371)
ATGTACACACGACACGACGCTGCTGCACTCGCGCGTGAAAGGAGCTGCAA
TCAAGGTGAGGTGTGAATTTGCGCAACGTTTTTGACAAGCCGCTTGGTGT
AGTAAAGTGACGCGAGCTTGGGGCTTGTAGGGGATGATGGTTGCTGGGGT
GCAAATACAATGTGTAATGTCAAACATACCTCCACGCCTCCCTCCCCACA
CGCACGCATACACGCATACATGCAACCACCTTGCGCGTGGATCCAGCAGA
GGATCGCACCAGTCTCCGGGAAGCCATCGAAGTTACTAGCATGATGGTCA
GCGGAAGGGCAGTCGCCACGGCTTTATGTGCTCTGGGCACCACCTCCGCG
TTCACAGCCCCGCTGGCAGGCTTCCGAGCGGTGAGCGAAGTGTGCGAGAT
GACAGGTTCAACACACGGTTGCCAACCAACTACAATTGTATTCTACAGCA
GTATGCATACAAAACAGCTGCCGCAGCAGCAGCAGCAGGAGCAGGAGTGC
TCTGGTGTATCGTCGCACGGCCGCGTTTGCGTGTCTTTAACTCTCAAGGT
AGCCTGACGTTTGCGTGGAGCGTTTTCTTGAGCATGCTAGTCGTTTGTTT
TGGCACGAGCTTTACACGTTGTGTGTTGGCCTGGTCGTTGATGTCGCTCG
CTCGGTACGCGTCGTGTGTGCATGTCTCTCGATGTTCCTGGTGCTGGTGC
AGGCTAAGGGCGTGTCGAGGCAGGTCACCCGGAATGTCGGGAGAAACTTG
CAGATGGCCACCGTGGTGAGTTCCCGTGGAACCAGACTACGGTCTTCCAG
TCGGTGTTGGTGGCGAAATGAACTGCCGTGGAGGTTTTAACAGCAGTCAT
GACACAGCAGGCAGCGGTGAAGATCAGGTGTCCGCACACGGCTGACAAAC
TGTTCCTGCTGGCTTGCACGTCCATGTTATCAAGAGACACGTGCGATGTG
TTCTTTGTTATTTCTTAGGAGAGAAAGTTGGTGCTGATGCCACATGGCGA
AACCGGAGTTTTCTCCCAAGGGAGGTTCGTTGTGGACCTGGCAGAATCGT
GCAAGCAAGGCTCTCGTATGTACGTACACACATGCATTCCGTCTCCGCCG
GCGCCAGTCTGCCGTACCACCTCTTTGATAAGGTGTTGCACACTCACAGC
CCGGAAATCCGTGGGTAGTCTAACCCTAGAGCCATGAGTGTGCCCTGTGT
AGAACCGGCCTCTCATCATCGCGGCTTCAGTACCCAACAGGTGCTATTTT
ACAGCAGACAAGTGCGCCCCGGCAGCAGCTACGCGCTGTGTTGTTCCAAT
CTCCCGTACCCAACAACGGACGGTGCAATGCTTTCCGAAGTCAGTCGGGG
TCAGTGCTTTCGTGGTGGCTTGCCTCGAACAGGTCGTATAGATGCGACGA
GCGAGGTGTGGGTGATGTCGCACGCATTGTCCCTGTGAGTTGGCCTCTCA
ACCCTGAAACACTCCCCATGCATGTTTGTGTCGTCGTGCCTTACCGCAAG
AGGCGGAGAGATAGCACCGGGTTGTTGTTGTTGTCTTCACATCGAACCGT
TCTGATCTCTGTACCGGTACAATCTTCATCTGTCCGTTCTAGTCTAGCAC
TTGACGCGGTCGATTCTTGTTGTAAATGTTATCCCGGTGCTTGCCTTTTG
TACCAGAGAGTTGTCTTCTTGTCCCGGATCGGTGTGGCCCTCCAGCTCTG
GACTCTTTCCTTTCCTGGCCTTTCCTCTCTCTGGCGCATACCCTCACAGC
TCGCGGTGTCTCTGCCACCCTCACCGTGTGCGATCGTTATTTTCTACGCC
ATTAAGTTTTTCCTCCATGCTCTTTGTCGCACCCCGGTGCGGAAATGCAA
ACCAATCACTTCATTTAGTTGTTTCCAAGTCACCCGGTGCGATCTCTCCG
ACCGGTGCGATGCCCAGTGGAATGGACACACACGGGCCTACTCGTGCTCG
GCGGTGTTGTATGCACGCACCCGGGTGCCATCTCCCCGACCGGTGACATC
TCTCCACCTCTGAGTATGTTGGTACCGGTGCAGGTACCAACAAGCAGACG
ATGTGCGTGTACCCTACACGAACGTAGGCTGGTAGTACATAGCAGCTTTC
CATGCAGCGAATGGCCGTGAGTTTGAATGCGAGTTGGGCTGTGGCGTGAC
AAGGACAACAAACGATGTTTTGCATCTGGGGTACCGTTACATACGGTATG
AGGTTGTCTCCCGCTTTCGTTTCGGTCTTCCTCTACGAATACCAGTTATC
AAGAGCAGCAGAACATAACATTTCCTTTCGAAAGGCGCGGTATGTTGTGT
GCTTGGCGCACAGTTTGCAATTCCATACTGACCACATGAAAACAACAGAC
GATCCCGCGCGAACCGCGCCGAACGTACACACGTACATGAAGGAGTGGTG
CTCCGCTGATACCGCCACCACATGTAAAACGTACCCGCATGTACCTCTTT
ACGGCACAATCTTGGATTTGAGGGTCGGTGAGATCCCGCCCCGTGTGATC
TCACTCGACCCGGGTGCGGAAATACAACAAACTCATGCCAGTTTTTGTTT
GTTCTCACCTTGTACCAGCTTTCCGACCCGTGCCATCTCTCCAATTCTTA
CGGTAACCCACAGAGACAGGTTCGGTCGCCATGTTTGAAACGGCGCATGT
ACAGAAATAAGGGCGAGAGTCACAGATCACAACGTTTAATGTTCGTGCGT
GTTTTTCTCCTGTAACCCGCTTTTCTTTCATGTTGTGCGTGCCGCACAGG
CCGAGGCATACGACATCAAGGTGAAGGGCGAGGAGAACACGATGGACTAC
CGCGCGTTCTTCCACCAGGCG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:192942..195762-

>mRNA_Ecto-sp6_S_contig100.710.1 ID=mRNA_Ecto-sp6_S_contig100.710.1|Name=mRNA_Ecto-sp6_S_contig100.710.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:192942..195762- (Ectocarpus species6 EcLAC_371)
ATGTACACACGACACGACGCTGCTGCACTCGCGCGTGAAAGGAGCTGCAA
TCAAGCAGAGGATCGCACCAGTCTCCGGGAAGCCATCGAAGTTACTAGCA
TGATGGTCAGCGGAAGGGCAGTCGCCACGGCTTTATGTGCTCTGGGCACC
ACCTCCGCGTTCACAGCCCCGCTGGCAGGCTTCCGAGCGGCTAAGGGCGT
GTCGAGGCAGGTCACCCGGAATGTCGGGAGAAACTTGCAGATGGCCACCG
TGGCCGAGGCATACGACATCAAGGTGAAGGGCGAGGAGAACACGATGGAC
TACCGCGCGTTCTTCCACCAGGCG
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