mRNA_Ecto-sp6_S_contig100.705.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig100.705.1
Unique NamemRNA_Ecto-sp6_S_contig100.705.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig100.705.1 vs. uniprot
Match: D7FK37_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK37_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 9.840e-10
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 3 
Query:  150 MEVGQRSPMGRYPSTGSQVGFGTTKH 227
            MEVGQRSPMGRYPSTGSQVGFGTTKH
Sbjct:    1 MEVGQRSPMGRYPSTGSQVGFGTTKH 26
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BLAST of mRNA_Ecto-sp6_S_contig100.705.1 vs. uniprot
Match: A0A6H5JGM7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGM7_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.160e-8
Identity = 21/33 (63.64%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:    1 VGSGWRHDRDLQQNPLRVGECICSRTDCVLGLY 99
            VG GW H+RDL  +PL+ GECIC R DCV+ LY
Sbjct:   62 VGEGWTHERDLVGDPLKAGECICRRADCVVNLY 94
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BLAST of mRNA_Ecto-sp6_S_contig100.705.1 vs. uniprot
Match: A0A6H5KE39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE39_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 2.660e-7
Identity = 20/32 (62.50%), Postives = 25/32 (78.12%), Query Frame = 1 
Query:    1 VGSGWRHDRDLQQNPLRVGECICSRTDCVLGL 96
            VG  W H+RDLQ +PL+VGECIC+R DC  G+
Sbjct:   61 VGQEWPHERDLQGDPLKVGECICTRPDCAGGI 92
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.705.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FK37_ECTSI9.840e-10100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JGM7_9PHAE1.160e-863.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE39_9PHAE2.660e-762.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig100contigEcto-sp6_S_contig100:177801..179099 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size251
Hectar predicted targeting categoryother localisation
Exons2
Cds size249
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348722.049451-CDS-Ecto-sp6_S_contig100:177800..1780031682348722.049451-CDS-Ecto-sp6_S_contig100:177800..178003Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 177801..178003 +
1682348722.0594742-CDS-Ecto-sp6_S_contig100:179053..1790991682348722.0594742-CDS-Ecto-sp6_S_contig100:179053..179099Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 179054..179099 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig100.705.1prot_Ecto-sp6_S_contig100.705.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig100 177801..179099 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig100.705.1

>prot_Ecto-sp6_S_contig100.705.1 ID=prot_Ecto-sp6_S_contig100.705.1|Name=mRNA_Ecto-sp6_S_contig100.705.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=83bp
VGSGWRHDRDLQQNPLRVGECICSRTDCVLGLYNSTCGGARGKKKDLCTK
WRSDSGRRWAGTPRRALRSASVQPSTESEVLA*
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mRNA from alignment at Ecto-sp6_S_contig100:177801..179099+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig100.705.1 ID=mRNA_Ecto-sp6_S_contig100.705.1|Name=mRNA_Ecto-sp6_S_contig100.705.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1299bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:177801..179099+ (Ectocarpus species6 EcLAC_371)
GTTGGGTCAGGCTGGCGTCATGATCGCGATCTTCAACAGAACCCTCTCCG
GGTGGGTGAGTGCATCTGTTCCCGCACGGACTGCGTACTTGGTTTGTACA
ACAGTACGTGTGGAGGCGCCAGAGGGAAGAAAAAGGACCTTTGCACAAAA
TGGAGGTCGGACAGCGGTCGCCGATGGGCCGGTACCCCTCGACGGGCTCT
CAGGTATGATGCCTCAGATACACCACCTCTGTCTACAGCAGTGTACGGTA
AGGACACGGGGGTGTCAGCATTTATCGTAGCGTGATTTCTCCACGACCAG
GAGGGTACCACTGCCGACAAGGTTAGTTTTGAAAAAATCACGTCAGGGCT
TGCCTGAGAGGTAGGTAGGTGTTCGCAACCTCGTCGCCGTGCTAACACCG
CCGTGCATTCTCTCGCATCCTTAAGGTAGGTCGTCTCCGAATTATAGACC
GCGCAAAGACACCACACGTAGAAACAACCCTATTTCTAGTTTGGTGTGTG
CGTTCTGCCTCTCCTTTTTTCTGGGATCTCGACCGTCGCCATGTGCGGTT
TGTTAATGGCATAGTACCGGGCGGTGCCCGACCCATCTCTGATCACATGT
CTCCCTCGCCCTGCTCCTCATTGAGTGACAGTTGTTCGGTTAGCCTTAGT
TGCTGTTTCTCACGTTAGCTCAATGGTAAGTACGAGGAATGTACCGTTCT
GCGTCGTTCTCTTTGAGGTTCTCTCCGTGTTGTGAGAAGAGCCTCAACCG
CTCCCCCGAAGACATCGGAAGAAGAATATGTACTGCTGTAGAACACCGCT
CATTTTTTTTTCCGCTGCCCGCACACTCCCTCTGCCCaAAAACCACCTAC
CATCCGAAGACATCGGGAGAAGTATATGTAATGCTGTAGAGCGCCGCTCA
TTTTTTTTTTCCGCTGCCCGCACACTCCCTCTGCCAGATTGCACCTACCA
CCCGAAGACATCGGAAGAAGTATATGTACTGCTGTAGAGCGCCGCTCATT
TTTTTTTCCGCTGCCCGCACACTCCCTCTGCCAGATAGCACCTACCATCT
ACAGTAGTAAGAATAACAGATGAAGTTACCACCACGTTGCATTCGCGATT
TTCAGGTGCGAGCCCTTCTGGAACATGTGGAACTGGAAGGCAGGGTACTC
GATTGCTGTGGTGCCGCCCAAGACGCAGTCTCCACCGTCCTGAGTTCACA
CGGTCTCCGTGTTGCAACAAACGACATGAACCCGACGTATGTGTGTGTCT
CAGGTCGGCTTCGGTACAACCAAGCACTGAATCCGAGGTGTTAGCGTAA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:177801..179099+

>mRNA_Ecto-sp6_S_contig100.705.1 ID=mRNA_Ecto-sp6_S_contig100.705.1|Name=mRNA_Ecto-sp6_S_contig100.705.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=249bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:177801..179099+ (Ectocarpus species6 EcLAC_371)
GTTGGGTCAGGCTGGCGTCATGATCGCGATCTTCAACAGAACCCTCTCCG
GGTGGGTGAGTGCATCTGTTCCCGCACGGACTGCGTACTTGGTTTGTACA
ACAGTACGTGTGGAGGCGCCAGAGGGAAGAAAAAGGACCTTTGCACAAAA
TGGAGGTCGGACAGCGGTCGCCGATGGGCCGGTACCCCTCGACGGGCTCT
CAGGTCGGCTTCGGTACAACCAAGCACTGAATCCGAGGTGTTAGCGTAA
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