mRNA_Ecto-sp6_S_contig100.704.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig100.704.1
Unique NamemRNA_Ecto-sp6_S_contig100.704.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.704.1 vs. uniprot
Match: A0A6H5KG41_9PHAE (Proteasome subunit beta n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG41_9PHAE)

HSP 1 Score: 422 bits (1085), Expect = 5.080e-148
Identity = 231/240 (96.25%), Postives = 234/240 (97.50%), Query Frame = 1 
Query:   82 MNTLMGVKGRDFVLLGGDSAFFRSVVIMDTEYRKVVELSDNVLVAASGDQGDVEMFVEWLKRNARLMQLESSRPVGARTLAHFARRNLADKLRKQGAGQAVIALLGGWNEVACQPELFWLDALGALQDVAFGAHGLASRFALSLLDNGFREGMSLDEARHLMETCFRQLERRYLVSSVGFSMKVVDKDGCRDVACIERGEEXXXXXXXXXXXXXXASEQPAGRGKPVVIPSVVRSDSSLS 801
            MNTLMGVKGRDFVLLGGDSAFFRSVVIMDTEYRKVVELSDNVLVA SGDQGDVEMFVEWLKRNARLMQLESSRPVGARTLAHFARRNLADKLRKQGAGQAV AL+GGWNEVACQPELFWLDALGALQDV FGAHGLASRFALSLLDNGFREGMSLDEARHLMETCFRQLERRYLVSSVGFSMKVVDKDGCRDVACIERGEEXXXXXXXXXXXXXXASEQPAGRGKPVV+PS   S+SSLS
Sbjct:    1 MNTLMGVKGRDFVLLGGDSAFFRSVVIMDTEYRKVVELSDNVLVATSGDQGDVEMFVEWLKRNARLMQLESSRPVGARTLAHFARRNLADKLRKQGAGQAVTALIGGWNEVACQPELFWLDALGALQDVPFGAHGLASRFALSLLDNGFREGMSLDEARHLMETCFRQLERRYLVSSVGFSMKVVDKDGCRDVACIERGEEXXXXXXXXXXXXXXASEQPAGRGKPVVLPS---SESSLS 237
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.704.1 vs. uniprot
Match: D7FKH0_ECTSI (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKH0_ECTSI)

HSP 1 Score: 451 bits (1159), Expect = 4.400e-146
Identity = 250/260 (96.15%), Postives = 253/260 (97.31%), Query Frame = 1 
Query:    1 MAASWGRILLQLALLCSSLISAVWASDMNTLMGVKGRDFVLLGGDSAFFRSVVIMDTEYRKVVELSDNVLVAASGDQGDVEMFVEWLKRNARLMQLESSRPVGARTLAHFARRNLADKLRKQGAGQAVIALLGGWNEVACQPELFWLDALGALQDVAFGAHGLASRFALSLLDNGFREGMSLDEARHLMETCFRQLERRYLVSSVGFSMKVVDKDGCRDVACIERGEEXXXXXXXXXXXXXXASEQPAGRGKPVVIPSVV 780
            MAA  G+ILLQLALL SSLISAVWASDMNTLMGVKGRDFVLLGGDSAFFRSVVIMDTEYRKVVELSDNVLVAASGDQGDVEMFVEWLKRNA+LMQLESSRPVGARTLAHFARRNLADKLRKQGAGQAV ALLGGWNEVA QPELFWLDALGALQDVAFGAHGLASRFALSLLDNGFREGMSLDEARHLMETCFRQLERRYLVSSVGFSMKVVDKDGCRDVACIERGEEXXXXXXXXXXXXX ASEQPAGRGKPVV PSV+
Sbjct:    1 MAARGGQILLQLALLFSSLISAVWASDMNTLMGVKGRDFVLLGGDSAFFRSVVIMDTEYRKVVELSDNVLVAASGDQGDVEMFVEWLKRNAQLMQLESSRPVGARTLAHFARRNLADKLRKQGAGQAVTALLGGWNEVAWQPELFWLDALGALQDVAFGAHGLASRFALSLLDNGFREGMSLDEARHLMETCFRQLERRYLVSSVGFSMKVVDKDGCRDVACIERGEEXXXXXXXXXXXXXRASEQPAGRGKPVV-PSVI 259
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.704.1 vs. uniprot
Match: UPI00026585B1 (proteasome subunit beta type-2 n=1 Tax=Galendromus occidentalis TaxID=34638 RepID=UPI00026585B1)

HSP 1 Score: 148 bits (373), Expect = 1.370e-40
Identity = 68/200 (34.00%), Postives = 129/200 (64.50%), Query Frame = 1 
Query:   82 MNTLMGVKGRDFVLLGGDSAFFRSVVIMDTEYRKVVELSDNVLVAASGDQGDVEMFVEWLKRNARLMQLESSRPVGARTLAHFARRNLADKLRKQGAGQAVIALLGGWNEVACQPELFWLDALGALQDVAFGAHGLASRFALSLLDNGFREGMSLDEARHLMETCFRQLERRYLVSSVGFSMKVVDKDGCRDVACIERGE 681
            M +L+G+K RDFVLL  D++  RS++++  + +K+ +LSD++ +A +G+ GD   F +++ +N +L ++ +   +  +  A+F R+NLAD LR + A +  + LLGG++  + +PEL+W+D LG+L  V F AHG    F++ ++D  +R  M+++EA  L+  C +++ +R+L +   F   V+D +G RD++ ++  E
Sbjct:    1 MESLIGIKCRDFVLLAADASVARSIMVLKQDEQKIFKLSDSLAMAVAGESGDTVQFADYIAKNIQLFKMRNGYGLSPKAAANFTRKNLADSLRTRNAYRCDL-LLGGFDSHSKEPELYWVDYLGSLAKVPFAAHGYGGIFSMGVIDAAYRADMTVEEAHSLIRACVKEIRKRFLGNMPVFKCVVIDTNGIRDLSDVKVDE 199
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.704.1 vs. uniprot
Match: D2V0Q9_NAEGR (Proteasome subunit beta n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2V0Q9_NAEGR)

HSP 1 Score: 143 bits (361), Expect = 1.140e-38
Identity = 75/194 (38.66%), Postives = 127/194 (65.46%), Query Frame = 1 
Query:   85 NTLMGVKGRDFVLLGGDSAFFRSVVIM-DTEYRKVVELSDNVLVAASGDQGDVEMFVEWLKRNARLMQLESSRPVGARTLAHFARRNLADKLRKQGAGQAVIALLGGWNEV-ACQPELFWLDALGALQDVAFGAHGLASRFALSLLDNGFREGMSLDEARHLMETCFRQLERRYLVSSVGFSMKVVDKDGCRDV 660
            +T++G+KG+DF LL  D+    S+++M DTE +     + N+L+AA G+QGD   FVE++ +N  L +L +   +  +  AHF R+ LA  LR  G  Q  I ++GG +++   +PEL+++D L ++Q+V +GAHG  S F LS+LD  +++GM+L+EA  ++  C  ++++R L+++  F +KVVDK G R+V
Sbjct:    3 DTVIGLKGKDFTLLAADTTASFSIILMKDTEDKITAVPNQNILIAAQGEQGDRVQFVEFITKNLNLYRLRNDTNLSVKASAHFVRQELAKALRS-GPYQTNI-MVGGVDDIEGAKPELYYIDYLSSMQEVKYGAHGYGSYFTLSILDKHYKDGMNLNEALIVLRMCVAEIQKRLLLNTPSFIVKVVDKYGSREV 194
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.704.1 vs. uniprot
Match: A0A8J1XMY1_OWEFU (Proteasome subunit beta n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1XMY1_OWEFU)

HSP 1 Score: 142 bits (359), Expect = 1.700e-38
Identity = 72/201 (35.82%), Postives = 125/201 (62.19%), Query Frame = 1 
Query:   82 MNTLMGVKGRDFVLLGGDSAFFRSVVIMDTEYRKVVELSDNVLVAASGDQGDVEMFVEWLKRNARLMQLESSRPVGARTLAHFARRNLADKLRKQGAGQAVIALLGGWNEVACQPELFWLDALGALQDVAFGAHGLASRFALSLLDNGFREGMSLDEARHLMETCFRQLERRYLVSSVGFSMKVVDKDGCRDVACIERGEE 684
            M  L+G+KG+DFV++  D+   RS+V M  ++ K+ +LSD +++A SG+ GD   F E++ +N +L ++ +   +  R  A+F RRNLA+ LR +   Q V  L+GG++E    P LF++D L AL +  F AHG  S F LSLLD  +R+ ++ + A  L+  C  ++++R++V+   F ++ ++KDG  D+  +  G++
Sbjct:    1 MECLIGIKGKDFVIVASDTISARSIVSMKQDHDKMFKLSDKIVMACSGESGDTVQFAEYISKNIQLYKMRNGYELSPRAAANFTRRNLAEYLRSRTPYQ-VNMLIGGYDETD-GPSLFYMDYLAALIEAPFAAHGYGSFFVLSLLDRYYRDDVTQEGAIKLLHQCIDEVQKRFIVNLPTFKVRCINKDGITDLPDLRAGKQ 199
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.704.1 vs. uniprot
Match: A0A1Y1NKF7_PHOPY (Proteasome subunit beta n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1NKF7_PHOPY)

HSP 1 Score: 142 bits (357), Expect = 3.700e-38
Identity = 69/196 (35.20%), Postives = 125/196 (63.78%), Query Frame = 1 
Query:   82 MNTLMGVKGRDFVLLGGDSAFFRSVVIMDTEYRKVVELSDNVLVAASGDQGDVEMFVEWLKRNARLMQLESSRPVGARTLAHFARRNLADKLRKQGAGQAVIALLGGWNEVACQPELFWLDALGALQDVAFGAHGLASRFALSLLDNGFREGMSLDEARHLMETCFRQLERRYLVSSVGFSMKVVDKDGCRDVACI 669
            M  L+G+K RDFV++  D     S+++M T+  K+  LS+ +++A SG+QGD   F E++ +N +L ++ +   +GA+  A+F RRNLA+ LR + A   V  LL G+++    P+L+++D L +L +V F +HG    F+L+++D  + E ++ +EA  +M+ C R++ +R +V+   F ++++DKDG RD+  I
Sbjct:    1 MECLLGIKCRDFVIVAADMTKAHSIMVMKTDENKLHTLSNKIVMAISGEQGDTTQFAEYIAKNIQLYKMRNGYELGAKAAANFTRRNLAEGLRSRNAYH-VNMLLAGYDDQE-GPQLYFVDYLASLANVKFASHGYGGFFSLAIMDRYYSEDLTPEEAYDIMKKCIREVHQRLIVNLPNFKLQIIDKDGIRDLPAI 194
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.704.1 vs. uniprot
Match: A0A284RK40_ARMOS (Proteasome subunit beta n=4 Tax=Physalacriaceae TaxID=862241 RepID=A0A284RK40_ARMOS)

HSP 1 Score: 141 bits (355), Expect = 5.850e-38
Identity = 74/193 (38.34%), Postives = 115/193 (59.59%), Query Frame = 1 
Query:   82 MNTLMGVKGRDFVLLGGDSAFFRSVVIMDTEYRKVVELSDNVLVAASGDQGDVEMFVEWLKRNARLMQLESSRPVGARTLAHFARRNLADKLRKQGAGQAVIALLGGWNEVACQPELFWLDALGALQDVAFGAHGLASRFALSLLDNGFREGMSLDEARHLMETCFRQLERRYLVSSVGFSMKVVDKDGCRDV 660
            M  L  + G+ +V++  D+   RS+V M  +  K+  LS ++L+A SG+ GD   F E+++RN RL Q+ ++ P+G    A + RR+LA+ LR +    AV  LLGG++    +P L+W+D LG + +V F AHG  S F LSLLD       SL+E    ++ C  ++ +R +VS   + +KVVDKDG R+V
Sbjct:    1 MENLFAITGKGYVIVAADTTSARSIVKMKVDEDKIKVLSPHLLMAYSGEPGDTIQFAEYVERNIRLFQIRNTYPLGPSAAASWIRRSLAESLRSRKP-YAVNLLLGGYDTTKHEPHLYWVDYLGTMTEVPFAAHGYGSYFVLSLLDRYHNPEASLEEGLATLKRCIAEVAKRVVVSPGQYKVKVVDKDGSREV 192
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.704.1 vs. uniprot
Match: A0A4S8L3M7_DENBC (Proteasome subunit beta n=3 Tax=Agaricales TaxID=5338 RepID=A0A4S8L3M7_DENBC)

HSP 1 Score: 140 bits (354), Expect = 8.250e-38
Identity = 75/193 (38.86%), Postives = 115/193 (59.59%), Query Frame = 1 
Query:   82 MNTLMGVKGRDFVLLGGDSAFFRSVVIMDTEYRKVVELSDNVLVAASGDQGDVEMFVEWLKRNARLMQLESSRPVGARTLAHFARRNLADKLRKQGAGQAVIALLGGWNEVACQPELFWLDALGALQDVAFGAHGLASRFALSLLDNGFREGMSLDEARHLMETCFRQLERRYLVSSVGFSMKVVDKDGCRDV 660
            M T   + G+ +V+L  D+   RS+V M ++  K+  LS ++L+A SG+ GD   F E+++RN RL Q+ ++ P+     A + RR+LAD LR +    AV  LLGG++     P L+W+D LG + ++ FGAHG  S FALSLLD       +L+E    +  C  ++ +R +VS   + +KVVDKDG R+V
Sbjct:    1 METSFAITGKGYVILAADTTSARSIVKMKSDEDKIKTLSPHLLMAYSGEPGDTIQFAEYIERNIRLYQIRNNYPLRPPAAASWIRRSLADSLRSRKP-YAVNLLLGGYDTTTYTPHLYWVDYLGTMTELPFGAHGYGSYFALSLLDRYHDPEATLEEGLATLRRCIDEVSKRLVVSPGKYKVKVVDKDGIREV 192
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.704.1 vs. uniprot
Match: A0A0C3PRE6_PHLGI (Proteasome subunit beta n=1 Tax=Phlebiopsis gigantea 11061_1 CR5-6 TaxID=745531 RepID=A0A0C3PRE6_PHLGI)

HSP 1 Score: 140 bits (354), Expect = 8.250e-38
Identity = 74/193 (38.34%), Postives = 114/193 (59.07%), Query Frame = 1 
Query:   82 MNTLMGVKGRDFVLLGGDSAFFRSVVIMDTEYRKVVELSDNVLVAASGDQGDVEMFVEWLKRNARLMQLESSRPVGARTLAHFARRNLADKLRKQGAGQAVIALLGGWNEVACQPELFWLDALGALQDVAFGAHGLASRFALSLLDNGFREGMSLDEARHLMETCFRQLERRYLVSSVGFSMKVVDKDGCRDV 660
            M    G+ G+ +VL+  D+    SV+ +  +  K++EL+ ++L+A SG+ GD   F E+++RN RL Q+ +S P+   + A + R+ LA  LR +    +V  LLGG++     P L+WLD LG L +V F AHG  S FALSLLD       SL+E    ++ C  ++ +R +VS   F +KVVDKDG R++
Sbjct:    1 MEVSFGITGKGYVLVAADTTAAHSVIKVKNDVDKIIELNPHLLMAYSGEPGDTVQFAEYVERNIRLYQIRNSLPLRPPSAASWVRKTLAQSLRSRSP-YSVNLLLGGYDTSDYTPHLYWLDYLGTLVEVPFAAHGYGSYFALSLLDRYHDPEASLEEGIETLKRCIAEISKRLVVSPERFKVKVVDKDGVREI 192
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.704.1 vs. uniprot
Match: F8NQX0_SERL9 (Proteasome subunit beta n=4 Tax=Agaricomycetidae TaxID=452333 RepID=F8NQX0_SERL9)

HSP 1 Score: 140 bits (353), Expect = 1.160e-37
Identity = 75/193 (38.86%), Postives = 116/193 (60.10%), Query Frame = 1 
Query:   82 MNTLMGVKGRDFVLLGGDSAFFRSVVIMDTEYRKVVELSDNVLVAASGDQGDVEMFVEWLKRNARLMQLESSRPVGARTLAHFARRNLADKLRKQGAGQAVIALLGGWNEVACQPELFWLDALGALQDVAFGAHGLASRFALSLLDNGFREGMSLDEARHLMETCFRQLERRYLVSSVGFSMKVVDKDGCRDV 660
            M T   + G+ +V++  D+   RS+V M  +  K+ E+S ++L+A SG+ GD   F E+++RN RL Q+ +  P+     A + RR+LAD LR +    +V  L+GG++    +P+L+W+D LG   DV FGAHG  S FALSLLD       SL+E    ++ C  ++ +R +VS   + +KVVDKDG R+V
Sbjct:    1 METSFALTGKGYVIVAADTTAARSIVKMKVDEDKIKEISPHLLMAYSGEPGDTVQFAEFVERNIRLYQIRNLYPLRPSAAASWIRRSLADSLRSRSP-YSVNLLVGGYDTATHEPKLYWIDYLGTQVDVPFGAHGYGSYFALSLLDRYHDPEASLEEGLATLKRCVDEVAKRLVVSPGRYKVKVVDKDGVREV 192
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KG41_9PHAE5.080e-14896.25Proteasome subunit beta n=1 Tax=Ectocarpus sp. CCA... [more]
D7FKH0_ECTSI4.400e-14696.15Protein kinase domain-containing protein n=2 Tax=E... [more]
UPI00026585B11.370e-4034.00proteasome subunit beta type-2 n=1 Tax=Galendromus... [more]
D2V0Q9_NAEGR1.140e-3838.66Proteasome subunit beta n=1 Tax=Naegleria gruberi ... [more]
A0A8J1XMY1_OWEFU1.700e-3835.82Proteasome subunit beta n=1 Tax=Owenia fusiformis ... [more]
A0A1Y1NKF7_PHOPY3.700e-3835.20Proteasome subunit beta n=1 Tax=Photinus pyralis T... [more]
A0A284RK40_ARMOS5.850e-3838.34Proteasome subunit beta n=4 Tax=Physalacriaceae Ta... [more]
A0A4S8L3M7_DENBC8.250e-3838.86Proteasome subunit beta n=3 Tax=Agaricales TaxID=5... [more]
A0A0C3PRE6_PHLGI8.250e-3838.34Proteasome subunit beta n=1 Tax=Phlebiopsis gigant... [more]
F8NQX0_SERL91.160e-3738.86Proteasome subunit beta n=4 Tax=Agaricomycetidae T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig100contigEcto-sp6_S_contig100:172273..176973 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score453.0
Seed ortholog evalue9.8e-125
Seed eggNOG ortholog2880.D7FKH0
Preferred nameSCYL2
Model size804
KEGG koko:K02734,ko:K08471,ko:K12847,ko:K16738,ko:K17541,ko:K18626
KEGG Pathwayko03040,ko03050,map03040,map03050
KEGG ModuleM00337,M00340,M00354
Hectar predicted targeting categorysignal peptide
GOsGO:0000003,GO:0000139,GO:0000166,GO:0000502,GO:0002090,GO:0002092,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005102,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005768,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005794,GO:0005802,GO:0005829,GO:0005839,GO:0005886,GO:0006464,GO:0006468,GO:0006508,GO:0006511,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006898,GO:0007034,GO:0007041,GO:0007088,GO:0007154,GO:0007165,GO:0007166,GO:0007267,GO:0007346,GO:0008047,GO:0008144,GO:0008150,GO:0008152,GO:0008333,GO:0009056,GO:0009057,GO:0009893,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0010008,GO:0010033,GO:0010243,GO:0010498,GO:0010499,GO:0010564,GO:0010604,GO:0010638,GO:0010646,GO:0010648,GO:0010950,GO:0010952,GO:0010965,GO:0012505,GO:0014070,GO:0016020,GO:0016055,GO:0016192,GO:0016301,GO:0016310,GO:0016504,GO:0016579,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0019222,GO:0019538,GO:0019774,GO:0019941,GO:0023051,GO:0023052,GO:0023057,GO:0030071,GO:0030100,GO:0030111,GO:0030135,GO:0030136,GO:0030162,GO:0030163,GO:0030178,GO:0030234,GO:0030554,GO:0031090,GO:0031323,GO:0031325,GO:0031331,GO:0031410,GO:0031597,GO:0031623,GO:0031974,GO:0031981,GO:0031982,GO:0031984,GO:0032006,GO:0032007,GO:0032268,GO:0032270,GO:0032436,GO:0032501,GO:0032504,GO:0032553,GO:0032555,GO:0032559,GO:0032588,GO:0032879,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034515,GO:0035639,GO:0036094,GO:0036211,GO:0042175,GO:0042221,GO:0043085,GO:0043112,GO:0043161,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0043687,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044431,GO:0044432,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045732,GO:0045787,GO:0045807,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046907,GO:0048046,GO:0048259,GO:0048260,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051603,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0052547,GO:0052548,GO:0060070,GO:0060255,GO:0060627,GO:0060828,GO:0061133,GO:0061134,GO:0061135,GO:0062033,GO:0065007,GO:0065009,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071944,GO:0080090,GO:0090068,GO:0090090,GO:0097159,GO:0097367,GO:0097708,GO:0098588,GO:0098657,GO:0098772,GO:0098791,GO:0098805,GO:0098827,GO:0140096,GO:0198738,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1902531,GO:1902532,GO:1903052,GO:1903364,GO:1903432,GO:1904262,GO:1905114,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:2000286,GO:2000369,GO:2000370,GO:2001252
Exons5
EggNOG free text desc.receptor internalization involved in canonical Wnt signaling pathway
EggNOG OGsCOG0638@1,KOG0177@2759,KOG2137@1,KOG2137@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_002115.1
EC3.4.25.1
Cds size804
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko01002,ko03036,ko03041,ko03051,ko04030,ko04131,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348721.9821768-CDS-Ecto-sp6_S_contig100:172272..1726651682348721.9821768-CDS-Ecto-sp6_S_contig100:172272..172665Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 172273..172665 -
1682348721.9938438-CDS-Ecto-sp6_S_contig100:173419..1735661682348721.9938438-CDS-Ecto-sp6_S_contig100:173419..173566Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 173420..173566 -
1682348722.0029616-CDS-Ecto-sp6_S_contig100:174035..1741281682348722.0029616-CDS-Ecto-sp6_S_contig100:174035..174128Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 174036..174128 -
1682348722.012204-CDS-Ecto-sp6_S_contig100:174567..1746591682348722.012204-CDS-Ecto-sp6_S_contig100:174567..174659Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 174568..174659 -
1682348722.0210955-CDS-Ecto-sp6_S_contig100:176894..1769731682348722.0210955-CDS-Ecto-sp6_S_contig100:176894..176973Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 176895..176973 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig100.704.1prot_Ecto-sp6_S_contig100.704.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig100 172273..176973 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig100.704.1

>prot_Ecto-sp6_S_contig100.704.1 ID=prot_Ecto-sp6_S_contig100.704.1|Name=mRNA_Ecto-sp6_S_contig100.704.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=268bp
MAASWGRILLQLALLCSSLISAVWASDMNTLMGVKGRDFVLLGGDSAFFR
SVVIMDTEYRKVVELSDNVLVAASGDQGDVEMFVEWLKRNARLMQLESSR
PVGARTLAHFARRNLADKLRKQGAGQAVIALLGGWNEVACQPELFWLDAL
GALQDVAFGAHGLASRFALSLLDNGFREGMSLDEARHLMETCFRQLERRY
LVSSVGFSMKVVDKDGCRDVACIERGEEGTGGRGGRGGGGGGASEQPAGR
GKPVVIPSVVRSDSSLS*
back to top

mRNA from alignment at Ecto-sp6_S_contig100:172273..176973-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig100.704.1 ID=mRNA_Ecto-sp6_S_contig100.704.1|Name=mRNA_Ecto-sp6_S_contig100.704.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4701bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:172273..176973- (Ectocarpus species6 EcLAC_371)
ATGGCGGCCAGCTGGGGGCGAATCCTGCTGCAGTTGGCGCTGCTGTGTTC
GAGCCTGATATCTGCCGTATGGGCTTCTGGTAAGCCTGAGTTATTGTATC
ACCACCACAGGCACTGGGTGTTGTACGGCTGTCTGTGTATGCTGCTGAGT
ACTCCACTATCTGTGCATCTGACAACAGCTGTGTGAACTGATGGACTAGA
TGTTAATGTTGTCAGGAGGCTTCCAAGTCTCGCGTATGGTGGCGTTGGTA
CCCGATAGACGTATTTTACATTGTACCCAAGTACCTTGCAATGACTTCTT
TAACTGGAAGCAATTGTCCCAATATTTACAGCAGTAAACACCGATAAAGC
CGGCACCAACATCGATTCTGGGTGTTGTGCAGTGGGTATCCTTGTGTAGT
ACAAGCAGGTAACCTTCTTGACGCTCTGCACATATGGATTACTTCACACT
GCAGCAGAACGAGTAGTGGTGCCAAGAATGGCGGCGTAGGAACCGTGTCG
TCCAGAGCTTCCGAAAGGTGTCATTTGATTTTGGCATCCTCCTCGTTGTT
GAGTATTGAGCTTTTGAACAACGGTCCAGGGGAGGTGGTATCTTGCGTAA
CCTGGTATCGTTCCTCGTGTGTGATGCCGGCCGTTTGTGTTGATTTTGTT
TTTGTTGCTTCCGTCTTCACAGTAATAAACGTTCCGGTCTCTGCCCAATA
CAGTACCATTTGACACCCGTACCGGTCCAACTGACGCGAACGCGTTCCGT
GGTCAGAGGACAAGTACAGCAAAAATCACACTTCGTAACCACTGGCTCGT
GCGTCCAGAACGTATGCTGTAGGCGAAGATACACCCACAACTCTTGCACC
TGCGCATTGTAGCCAACCTGCTGGGGCAACGGTCAAACAATGGTACGCGT
TTTTCTTTTGCGCCTCACGCTGATGTGCCCTGGCATAAGACAGGGTATCG
AGTTCTTGTCTCGAAAATTGTTTGAAGTACACGATTTTGGCCGTGACACC
AAGGGAGGGTATATTTTCATTTTTTCGGGGCTGCTCAGCTCCCGTTCGCA
CGCTCGGCTGCCGCCATTAATACTGTACCCGCTACAGGCCGAAATTCTGG
GTTATTCGCCCGAGCATATGACCGCGTGAATAAGGGCCCGGACGATCAAT
TTGGTCAATTGCGGTTTGGAACAACTGCTGTACTGTCGTACATGACCCGT
GTAGGACCTTGACCCCACCACCTCAACCCTGACCCCATTTGCTATGTACA
ATAGGCAGATGTCGATCACTTCGTCGCAAGAGTAGGCCGGGACATCGCAC
CGGCGGGACTGCCTTCCAGACTTCTGTGCCCGTTGTGTACTACTGTGTGT
GCTGCATTGTCAAAGTTTTCTCGGCGACCAATTGTTTTAATTGTTTCTTG
TCGGCCGGATGCCGTGTTGTGGCCGAAAGCATCAGAGTACAGCAAAGGAT
GTTGAAAATCAGAGGCTCCGGGTCTGCTGAGACTGTGTAGTCACGAACAG
TTCCGTAGTGTTTTTTCCGGTGCTAGATTGCTTGGTGTGTTCCTTTGAGC
GAATGTCAGATCTGCTGAAAAGGTCCTCAATATTACCAAGATAATAGGCT
GATGGCGCAAGTAGTCTATCTGCTCATGTGACCTGTGCTATGGCGATTGC
AGCAGTGAGCAAGCAAGGTCACAGAAGCGTGCGTGTGCGACACTTTGTTG
ACAGGTGTGCGGAGGTGCACTGTAGACGTGAGTTTACAACCTTACTGAAT
GGAATTTGGTTCAAAGAGAAATGAGAAAATACGTTGTACAAGTTTGTTGT
ATTGTTGAGCTGGGCAGGAAACAGCATGAGCTCCGGTGGGGGGCGTGCCT
CTGCCTGGTCAGCCTGTTTGTCGAGTACCTACGAAAGTACGAAGAACCTC
AGTACCAGTCCGGAACCGTTCCGGGAACCTTTCTAATCTTACTTGGAATT
TTCCTGACAACGATCCTGAGAACCGTTGTAAAAAAATATGCTCGATCTAG
GAAACATTCTACGAACCGTTGCGGAATCTACAGCATCTATCAGCGGATCG
TTCTAGCTACCTTTCCTACACTTGTTCTTCAAGTTGAAGTTTCTCCTTCA
GTAGCTTATTATATCGCGTTTAGTGTGCCGTGTTGTTTTGTAGTACGAAA
TCGCTCATGATGTATGTGACATCGTACAGTATACTGCATTGTATTCATGA
GAATACTTGTAACAACAGTCCCAGTTGATACTGATATTTTTTACAGGATA
TTGCCCTGTTTATACTGTTTCCCTCTTCCCTGACCCCGTCCCCACTCCAA
TCAAACGCTCTCAGACATGAACACCTTGATGGGGGTAAAAGGTCGCGACT
TCGTGCTGCTAGGGGGCGACAGCGCCTTCTTTCGGTCGGTGGTCATCATG
GACACGGTAAGCTACGGTGTTCTCGAGCCCTTTTCTCTTGTCGAAATGGC
GACCGCACACATGCGCCGAAAGGTCTGTAAACCGGCGCCAGAATAGATGG
GGACGAACACACACACACACAGCTTCTATCTCTGCGTCTTGCGATGATAT
GGCAGTAGGCTATCTGCCGAGACATGCATGCCACCCTCTCTGTGTTCACC
CTGGTGCTCGTGATCACACGGGTGGCTCGAGACGGAAGCTTGTAAACACC
ATTCGCTGTGTACCCGTTGCACCAGACGGCAACTCTCAGGTCCCGTTCAA
GTGATGACTGCCGGCGCCCGAATCAAAGCACCACGTGGAGCAGCGGTGAC
GATTCACTGGCCGGTGATTGCCCGCAGTCAAGCAGGACAGACAGTGCTTG
TCGTCTGGGCTAAACATTCATGATTTCTTTCTGCCGTGTCCCCAGGAGTA
TCGAAAAGTGGTGGAGCTATCGGACAACGTGCTGGTTGCGGCGTCCGGTG
ACCAGGGTGATGTTGAGATGTTCGTGGAGTGGCTCAAGGTAACAAGAATA
CTGTCCCCACAACCAGCAGTCCCGCACACACGATACCAATGTGCATCTGT
TCGAATTTCAGGTGATGTCATCGGTGACCCAAAGGGAAGGGGCGCGTGAA
GCGATGGACCGGTCTCTCAAGCTGGCTGTTGGTTAGAAGCAAAAATTTAA
CACCCCCGTCAGCGGTCGAATAATCTAATTGTAGGACTCAAAGACGCTGC
TGCCGTGACTGAGTGTTGCCACCGGTTTCAATATGAGAGTCGGCCCCAGA
GAGAGGTCCTCGCTGTCGTTTTCGTGTTGCATTCCATAGCGCTCATGGCG
CGGAAGTAGTACCGGCAGTCAAAGACAACCTTTGGCTTTGGATTTTTGAC
GACGAACAGTAAGTGCGTCGTGTGGGCCACCTCGTTCTTGTCTTGCGGCC
TGGCCCAACCGCGCTTGCCGAACCCCTCCCTCTCTCACTGCGCGTGCGCA
TCGTCAGCGAAATGCACGGCTGATGCAGCTTGAGTCCTCGCGACCGGTGG
GCGCGCGAACGTTAGCGCACTTCGCGAGGCGGAACCTAGCCGACAAGCTG
CGAAAACAGGGGGCGGGGCAGGCAGTGATTGCGCTTCTCGGCGGGTGGAA
CGAGGTGCGCGTGCTTGCTGAAAATGGCGAATGTATATTATTTGTAAATA
TACAACACAAACGCAGAAAGACTACCCGTTCGAGATATGCACACAACCAC
AGCAGTCGAAGGGGATGTGTTGGAGTCTTTGCAGTGAGTGGAGGGAAACC
GGCTGGGCACTGGGCTCATTTCGAGTTATTTAAGCCTGTACACTGAACTT
TTGTCGGTGATGCCAACAGGTGCTAATCACGAAATATATACGGAGTATGC
AGGGTCTGGTGTTTTCGATGGGCGCAAGATGTTTTTGTGTGTGTGCATTT
TCGCGATGTGTCGTAAATGACGGAGCACGTGAATGGCGGAGCACGTGACG
TTCTACCGCAAGCTCGCCTGCTTAGATACCGACTCACACATTTCCATCCA
CTTTTTTCTTTACCCGCGCCTTTGCCTCTGATGGCGCAGCGAAAATGCCC
GCCACACCTATCTATAACAAACCGTATTTTCGCTACTAAGCAGCGTTCAC
CGATTGGATGTCTGAGCATGCCAGGACCTCGAATGCACCCACCTCACTTG
TCAGTACACGCAAATGCTCACAGCGGACAGCGTTAAAGTGTTTTGACCTT
GCTTTGGTCCCCCCTACGCTGCACAGGAACTCATTTAGCTTTGTCCGATT
TCTTCTTCGATCGAGCCAACAGCGTTCGATTCGTTGATGTCAAGGTCTAG
ACAGCTTCGTGTATGGTTTGCCACTTGTTCCTTGATTTTACGCTCTCTCT
GCACGCAGGTCGCGTGCCAGCCTGAGCTGTTTTGGCTGGACGCCTTGGGC
GCTCTCCAGGACGTCGCGTTCGGCGCGCACGGCCTAGCCTCGCGTTTCGC
GCTGAGCCTTCTCGACAACGGCTTTCGCGAGGGCATGTCTCTCGACGAAG
CGCGACATCTCATGGAAACGTGCTTCCGGCAGCTGGAGCGACGATACCTC
GTCAGTTCTGTGGGCTTTAGCATGAAGGTTGTGGACAAAGATGGTTGCAG
AGACGTAGCTTGTATTGAGCGAGGGGAAGAGGGGACCGGCGGACGGGGGG
GGCGGGGGGGGGGGGGGGGGGGTGCGTCAGAGCAACCTGCTGGTAGAGGT
AAACCGGTTGTTATTCCATCAGTTGTGAGAAGCGACTCGAGTTTAAGTTA
A
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:172273..176973-

>mRNA_Ecto-sp6_S_contig100.704.1 ID=mRNA_Ecto-sp6_S_contig100.704.1|Name=mRNA_Ecto-sp6_S_contig100.704.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=804bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:172273..176973- (Ectocarpus species6 EcLAC_371)
ATGGCGGCCAGCTGGGGGCGAATCCTGCTGCAGTTGGCGCTGCTGTGTTC
GAGCCTGATATCTGCCGTATGGGCTTCTGACATGAACACCTTGATGGGGG
TAAAAGGTCGCGACTTCGTGCTGCTAGGGGGCGACAGCGCCTTCTTTCGG
TCGGTGGTCATCATGGACACGGAGTATCGAAAAGTGGTGGAGCTATCGGA
CAACGTGCTGGTTGCGGCGTCCGGTGACCAGGGTGATGTTGAGATGTTCG
TGGAGTGGCTCAAGCGAAATGCACGGCTGATGCAGCTTGAGTCCTCGCGA
CCGGTGGGCGCGCGAACGTTAGCGCACTTCGCGAGGCGGAACCTAGCCGA
CAAGCTGCGAAAACAGGGGGCGGGGCAGGCAGTGATTGCGCTTCTCGGCG
GGTGGAACGAGGTCGCGTGCCAGCCTGAGCTGTTTTGGCTGGACGCCTTG
GGCGCTCTCCAGGACGTCGCGTTCGGCGCGCACGGCCTAGCCTCGCGTTT
CGCGCTGAGCCTTCTCGACAACGGCTTTCGCGAGGGCATGTCTCTCGACG
AAGCGCGACATCTCATGGAAACGTGCTTCCGGCAGCTGGAGCGACGATAC
CTCGTCAGTTCTGTGGGCTTTAGCATGAAGGTTGTGGACAAAGATGGTTG
CAGAGACGTAGCTTGTATTGAGCGAGGGGAAGAGGGGACCGGCGGACGGG
GGGGGCGGGGGGGGGGGGGGGGGGGTGCGTCAGAGCAACCTGCTGGTAGA
GGTAAACCGGTTGTTATTCCATCAGTTGTGAGAAGCGACTCGAGTTTAAG
TTAA
back to top