mRNA_Ecto-sp6_S_contig100.700.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig100.700.1
Unique NamemRNA_Ecto-sp6_S_contig100.700.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig100contigEcto-sp6_S_contig100:141863..144544 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size350
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_002080.1
Cds size348
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348721.685004-CDS-Ecto-sp6_S_contig100:141862..1420111682348721.685004-CDS-Ecto-sp6_S_contig100:141862..142011Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 141863..142011 +
1682348721.6930249-CDS-Ecto-sp6_S_contig100:144345..1445441682348721.6930249-CDS-Ecto-sp6_S_contig100:144345..144544Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 144346..144544 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig100.700.1prot_Ecto-sp6_S_contig100.700.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig100 141863..144544 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig100.700.1

>prot_Ecto-sp6_S_contig100.700.1 ID=prot_Ecto-sp6_S_contig100.700.1|Name=mRNA_Ecto-sp6_S_contig100.700.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=116bp
GSGGAGEVHARQDRCRDGPGGGDLRHNPLNTSMASYAWVSRVAGRHCGPC
PRRARSRFAEARTIISRSDGLVEHSETDVIGGGREDSNKLRRNWPRWIPP
RTHKRTLQQRESPGG*
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mRNA from alignment at Ecto-sp6_S_contig100:141863..144544+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig100.700.1 ID=mRNA_Ecto-sp6_S_contig100.700.1|Name=mRNA_Ecto-sp6_S_contig100.700.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2682bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:141863..144544+ (Ectocarpus species6 EcLAC_371)
GGATCGGGCGGAGCGGGAGAGGTTCACGCTCGCCAGGATCGTTGTAGGGA
TGGCCCTGGCGGAGGGGATCTCAGGCATAACCCACTGAACACATCGATGG
CCTCATATGCTTGGGTCAGTCGGGTCGCCGGACGACATTGCGGGCCCTGG
TGAGTGCGTGCTGTTCTGTCTCTGGTTGCATGGAAGGTCTGGGTGCCAGC
CGTTGTGAAGTACGCTCGGGTTGGGATGTGCCTAAACGTGTTTGCTCTCA
CCGCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTCCTTGGCTGT
TTGTGGGTGTAGTACTTCTTTTTCTTTTTTCTTGTTAGCACCGATCGCGC
AAACGGGCTGACCAATGAAAAGACGTCAGTCTCAGTGCGGTTTGAAAACA
CAAAACACTTCTAAGTGCCATTAACTGGGACCCCGTGAGGGGGCGGCGTG
GGGGAGAGTAATCTATTCTCCGGATCAAAGACAGAAACGGTAGCAACAGA
AGAAAACTGCGCGCGTCTATGAAGGCTGCTACCTTGCACTCGAGTTCGTT
TTGGAGTGCTTTCACCATCACCCTCCTTGCTTTCACTCCCATCGTTCTCA
TCATCAGTTTGACAGCAACTTTTCGACATTTCTTCTCTGGCCCTGCGTCG
TTTGTGGTGGGGAAGGTCATCTCTGTGTGTTTTTATTGTTAGCATCGACC
GCGCTAACCGGTTGACCAATAAAAATACGTCAGTCTTAGTGTGGTTGAAA
ACACCAAACACTTTTAAATGCCATTAGCTGGGAGCCCATGATGGGGCGGC
ATgggggggGGGGGGTACTCTTATGTTTTGTATGCCTTAGCGGTTAGACC
ATTGACCACGCGTCCTCGAGAGGACGGAGCATTGTTCCCACAGGACCGAT
CACCGATGGCCAATCGTTCCTTCCTACTTTGCCAAAGGTGGCTAAAAAAT
GTCTTCCCTAGTTTGTCTTTCCTAACGATATTCCTTCTCGCCTGTTCAAA
CCACTTCCTACTCCCCAGTACAGTTACCGTCCTCTCCTCTCTATTCCATG
CCTCAAACATCTCCCTGTACCTCCCTTGTATATTTGCCATCTCAGTCATG
TACGCTTCCCTCTCCGTATTGTACAACTGACATTCCGCGACTACATGAAC
ACGGTCTTCGCATGCGAAGCCGCAATCACATTTGAACTTGTCGTCTTCGT
CGTCTACCGTCCTATGTCTTCGTCGACGTTCTCGAAGGCCTATGTCCCCG
GTCCTGAATTTGAGCTTAAACTTTGTCCCTGCATCCATTGGTCCATGTAG
GTAGTCCTTGAACCCTATTCCTTCTTTCAACATTCCGTACACTTCTAGAC
CCTCCTTATCCTCGGTTTCTTTCCTTAGATTCTGTTCTTCTCTCTCGGAA
CAAGCAACAGACATATTCTCCTTGAACCCCTGTAGACCCTCCGTTACTAG
GCTTTCATCTTCATCGATTTCGAACCCCTTCCATTCGTCCTCTACAACCT
TGACCCATTCCGTGGGTTGTCTATCCCTCTTTTTGTTTGCCCACTTCGCC
TCCCATACTATTGTCGGCAACCTCTCCTCTCCCATCCCGATGGGGCGGTA
TGGGGGAGATTAATCTATTCTCCGGATCAAAGACAGAAACGGTAGCAACA
GAAGAAAACTGCACACTTCTACGAAGGCTGCTACCTTGCACTCGTGTTCG
TTTTGGAGTGCTTTCACCATCACCCTCCTTGCTTTCACTGCTACCATCGT
TCTCATCATCATCATTCTGACAGCTATTCTTTGGTAGTTCTTCTCTGGCC
CTGCGTCTTTTGTTGCGGGGAAGGTCATCCGCCTCGAAGCTCTTGCTCTC
TTCCACGCCATGATGCCCTCCTCGACTACTGTTTTGGTCTGTCTCGTCCT
CCTCCCGTTCCCTCTCCTCCTCTTTCATCGCTGCCAAACGAATTCCCCTC
ATTGTCATCCTGGTCGTTTCTATCTGCACTACTACCGAGATCCCAGCCTA
TTGACCATGGTGGGAATTGATCCATCAGTAGTAGTCCATGACGTTTGAAA
CCATCACGAGTTCGTACGGATAGAAAACGAGCCAGCTCGAAGGGTGTGTG
TGTGTGTTCTTCGTCGCGTGGTCGATTTGCCGCGGGTGTACGCATTGTTC
GAAGACTACAGCTGCATCGATACCCTCAATCGGCAGCGTGCGTTGCTGTG
TGACGAATTCTCTCGGTAGGCTGTAGAAGAACACGACCGCCCGATGGTCA
CAAACGTTTGTGTCGTCTCGGTGATTCGTGCTGCGGCCCCTTCCCGGGGG
GTCAATATACCCCACCTGTTTTCACTCGCGCTCGCCGAGGGTATTGTTTT
TGTCGGTGGTTTGCGAAGAACTTCTTGTGCTTGGTTCTGAATCGTTTTCT
GTTGTGCCTGTTTTCGCTTGTGTGCCCCGGTGGTCGATCGCCTGTTCCAC
CACTTTTTCTTTTTTGTTCCGGTGGCTACCCAGTCCTCGCCGGGCTCGAT
CGCGGTTTGCAGAAGCACGGACAATTATATCGCGCTCAGACGGCCTTGTA
GAGCATTCAGAGACAGATGTCATTGGTGGGGGAAGAGAAGATAGCAACAA
ACTGCGGAGGAACTGGCCTCGCTGGATCCCGCCACGCACCCACAAGAGGA
CGCTTCAGCAGCGAGAATCGCCAGGAGGCTAG
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:141863..144544+

>mRNA_Ecto-sp6_S_contig100.700.1 ID=mRNA_Ecto-sp6_S_contig100.700.1|Name=mRNA_Ecto-sp6_S_contig100.700.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=348bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:141863..144544+ (Ectocarpus species6 EcLAC_371)
GGATCGGGCGGAGCGGGAGAGGTTCACGCTCGCCAGGATCGTTGTAGGGA
TGGCCCTGGCGGAGGGGATCTCAGGCATAACCCACTGAACACATCGATGG
CCTCATATGCTTGGGTCAGTCGGGTCGCCGGACGACATTGCGGGCCCTGT
CCTCGCCGGGCTCGATCGCGGTTTGCAGAAGCACGGACAATTATATCGCG
CTCAGACGGCCTTGTAGAGCATTCAGAGACAGATGTCATTGGTGGGGGAA
GAGAAGATAGCAACAAACTGCGGAGGAACTGGCCTCGCTGGATCCCGCCA
CGCACCCACAAGAGGACGCTTCAGCAGCGAGAATCGCCAGGAGGCTAG
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