mRNA_Ecto-sp6_S_contig100.696.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig100.696.1
Unique NamemRNA_Ecto-sp6_S_contig100.696.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.696.1 vs. uniprot
Match: D7FKH7_ECTSI (40S ribosomal protein S3a n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKH7_ECTSI)

HSP 1 Score: 510 bits (1314), Expect = 1.020e-179
Identity = 257/257 (100.00%), Postives = 257/257 (100.00%), Query Frame = 3 
Query:   33 MAIGKTNKKGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMEREDEGEEAVVADE 803
            MAIGKTNKKGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMEREDEGEEAVVADE
Sbjct:    1 MAIGKTNKKGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMEREDEGEEAVVADE 257
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.696.1 vs. uniprot
Match: A0A835Z1K4_9STRA (40S ribosomal protein S3a n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1K4_9STRA)

HSP 1 Score: 358 bits (919), Expect = 1.170e-119
Identity = 184/258 (71.32%), Postives = 208/258 (80.62%), Query Frame = 3 
Query:   33 MAIGKTNKKGGRKGN-KKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMEREDEGEE--AVVA 797
            MA+GKT KK G+KG  KKKTVDP T KEWYDIKAPS F VRN GKTL+TRT GTKIASEGLKGRVFE SLGDLN DE+ G+RK+KLCCEDVQGT+ LT FHGMDLTRDKLCSLIKKWQTLIE QVDVRTTDGY LR+ CIGFTKK D Q+K TCYA+A+Q+RA+R+KM +IM++E SKCDL+ELV KF+ + +S  I KA + I P+QNV IRK K LKKPKFDLTKLMEMH    TED G  + R    EE  AV A
Sbjct:    1 MAVGKTQKKIGKKGKGKKKTVDPFTRKEWYDIKAPSTFAVRNAGKTLITRTTGTKIASEGLKGRVFEVSLGDLNNDEEHGFRKIKLCCEDVQGTNCLTTFHGMDLTRDKLCSLIKKWQTLIEAQVDVRTTDGYYLRVFCIGFTKKTDGQVKATCYAKAAQVRAIRRKMTEIMTDECSKCDLKELVQKFVLDTVSERITKAARGIVPLQNVLIRKCKVLKKPKFDLTKLMEMH----TEDAGAAVARPAAAEEEPAVAA 254
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.696.1 vs. uniprot
Match: A0A7S2Y1J4_9STRA (40S ribosomal protein S3a n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1J4_9STRA)

HSP 1 Score: 353 bits (907), Expect = 1.770e-117
Identity = 177/250 (70.80%), Postives = 205/250 (82.00%), Query Frame = 3 
Query:   33 MAIGKTNK-KGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMEREDEG 779
            MA+GK  +    +KG KKK  DP   KEWYD+KAPS F  R PGKTL+TRT+GTKIASEGL+GRVFEFSL DLN DE+  YRK+KLC E+VQGTS LTNFHGMDLTRDKLCSLIKKWQTLIE +VDV+TTDGY +R+ CIGFTK+  NQIK+T YAQASQ++A+RKKM DIM+EEA KCDL+ELV KFIPE+IS EI KA Q I+P+QNV+IRKVK LKKP+FDL KLMEMHGD   ED+G  + R  EG
Sbjct:   26 MAVGKNKRLTKSKKGGKKKITDPFLKKEWYDVKAPSFFSNRTPGKTLITRTQGTKIASEGLQGRVFEFSLADLNHDEEQAYRKIKLCVEEVQGTSCLTNFHGMDLTRDKLCSLIKKWQTLIEARVDVKTTDGYFMRLFCIGFTKRMPNQIKKTAYAQASQVKAIRKKMVDIMTEEAVKCDLKELVAKFIPESISTEIEKACQGIFPLQNVFIRKVKMLKKPRFDLIKLMEMHGDGG-EDVGAGVSRGAEG 274
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.696.1 vs. uniprot
Match: C5XD92_SORBI (40S ribosomal protein S3a n=6 Tax=Andropogoneae TaxID=147429 RepID=C5XD92_SORBI)

HSP 1 Score: 340 bits (872), Expect = 1.580e-112
Identity = 170/258 (65.89%), Postives = 207/258 (80.23%), Query Frame = 3 
Query:   33 MAIGKTNK-KGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMEREDEGEEAVVADE 803
            MA+GK  +   G+KG KKKTVDP + K+WYDIKAPS+F VRN GKTLV+RT+GTKIASEGLK RVFE SL DL +DED  YRK++L  ED+QG +VLTNF GM  T DKL SL+KKWQTLIE  VDV+TTD Y+LR+ CIGFTK++ NQ+K+TCYAQASQIR +R+KM +IMS +AS CDL+ELV KFIPE I  EI KA  SI+P+QNV+IRKVK LK PKFD+ KLME+HGD   ED+G++M+R  EG+EA+   E
Sbjct:    1 MAVGKNKRISKGKKGGKKKTVDPFSKKDWYDIKAPSVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQSDEDQAYRKIRLRAEDIQGRNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMTEIMSNQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFIRKVKILKAPKFDIGKLMEVHGDYAKEDVGVKMDRPAEGDEAMGGQE 258
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.696.1 vs. uniprot
Match: F0YJC6_AURAN (40S ribosomal protein S3a n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJC6_AURAN)

HSP 1 Score: 338 bits (867), Expect = 1.110e-111
Identity = 168/257 (65.37%), Postives = 199/257 (77.43%), Query Frame = 3 
Query:   33 MAIGKTNK-KGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMEREDEGEEAVVAD 800
            MA+GK  +    +KG KKK  DP   KEWY+IKAPS+F  RN GKTLVTRT+GTKIAS+ LKGRVF+ SL DLN DED  YRK+KL CED+QG + LTNFHGMD+TRDKL SLIKKWQTLIEG VDV+TTDGY LR+ CI FT K  NQI + CYA ++Q+R +RKKM +IM +EA+KCDL+ELVLK IPE +  EI KA   I+P+QNV++RKVK LKKPKFDLTKLME+HGD   ED G  + RE EGEE   A+
Sbjct:    1 MAVGKNKRLTKSKKGGKKKATDPFLKKEWYEIKAPSMFSQRNAGKTLVTRTQGTKIASDALKGRVFDLSLADLNNDEDQTYRKIKLVCEDIQGYNCLTNFHGMDMTRDKLASLIKKWQTLIEGNVDVKTTDGYTLRMFCIAFTTKMPNQIAKMCYANSAQVRLIRKKMVEIMRDEATKCDLKELVLKLIPEYMGTEIEKACAGIFPLQNVFVRKVKVLKKPKFDLTKLMELHGDAGNEDSGAAVPREGEGEEVAAAE 257
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.696.1 vs. uniprot
Match: I1HW94_BRADI (40S ribosomal protein S3a n=6 Tax=Pooideae TaxID=147368 RepID=I1HW94_BRADI)

HSP 1 Score: 335 bits (859), Expect = 1.570e-110
Identity = 167/254 (65.75%), Postives = 203/254 (79.92%), Query Frame = 3 
Query:   33 MAIGKTNK-KGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMEREDEGEEAV 791
            MA+GK  +   GRKG+KKK VDP T KEWYDIKAP +F  RN GKTLV+RT+GTKIASEGLK RVFE SL DL  DED  YRK++L  EDVQG +VLTNF GMD T DKL SL+KKWQTLIE  VDV+TTD Y++R+ CIGFTK++ NQ+K+TCYAQ+SQIR +R+KM +IM  +A+ CDL+ELV KFIPE I  EI KA  SI+P+QNVY+RKVK LK PKFDL KLME+HGD   ED+G++++R  EG+EA+
Sbjct:    1 MAVGKNKRISKGRKGSKKKIVDPFTKKEWYDIKAPLLFNTRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQAYRKIRLRAEDVQGRNVLTNFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMIRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMVEIMINQAASCDLKELVAKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYGKEDVGVKLDRPAEGDEAI 254
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.696.1 vs. uniprot
Match: RS3A_ORYSJ (40S ribosomal protein S3a n=56 Tax=Poaceae TaxID=4479 RepID=RS3A_ORYSJ)

HSP 1 Score: 335 bits (858), Expect = 2.000e-110
Identity = 172/262 (65.65%), Postives = 207/262 (79.01%), Query Frame = 3 
Query:   33 MAIGKTNK-KGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMER--EDE---GEEAVVAD 800
            MA+GK  +   G+KG+KKKTVDP   K+WYDIKAPS+F VRN GKTLV+RT+GTKIASEGLK RVFE SL DL  DED  YRK++L  EDVQG +VLTNF GM  T DKL SL+KKWQTLIE  VDV+TTDGY+LR+ CIGFTK++ NQ+K+TCYAQASQIR +R+KM +IM+ +AS CDL+ELV KFIPE I  EI KA  SI+P+QNV++RKVK LK PKFDL KLME+HGD   EDIG +++R  EDE   G+E   A+
Sbjct:    1 MAVGKNKRISKGKKGSKKKTVDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVHGDYAKEDIGTKLDRPAEDEAMAGQEVAAAE 262
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.696.1 vs. uniprot
Match: A0A5J9WLA6_9POAL (40S ribosomal protein S3a n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9WLA6_9POAL)

HSP 1 Score: 340 bits (871), Expect = 7.400e-110
Identity = 172/259 (66.41%), Postives = 208/259 (80.31%), Query Frame = 3 
Query:   30 TMAIGKTNK-KGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMEREDEGEEAVVADE 803
            TMA+GK  +   G+KG KKKTVDP   K+WYDIKAPS+F VRN GKTLV+RT+GTKIASEGLK RVFE SL DL +DED  YRK++L  EDVQG +VLTNF GMD T DKL SL+KKWQTLIE  VDV+TTDGY+LR+ CIGFTK++ NQ+K+TCYAQ+SQIR +R+KM +IM+ +AS CDL+ELV KFIPE I  EI KA  SI+P+QNV+IRKVK LK PKFDL KLME+HGD   ED+G+++ER  EG+E +   E
Sbjct:  177 TMAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQSDEDQAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMVEIMASQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFIRKVKILKAPKFDLGKLMEVHGDYK-EDVGVKLERPAEGDETMATPE 434
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.696.1 vs. uniprot
Match: I1H8I6_BRADI (40S ribosomal protein S3a n=4 Tax=Pooideae TaxID=147368 RepID=I1H8I6_BRADI)

HSP 1 Score: 333 bits (853), Expect = 1.220e-109
Identity = 168/254 (66.14%), Postives = 205/254 (80.71%), Query Frame = 3 
Query:   33 MAIGKTNK-KGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMEREDEGEEAV 791
            MA+GK  +   GRKG+KKK VDP T KEWYDIKAP +F  RN GKTLV+RT+GTKIASEGLK RVFE SL DL ADED  +RK++L  EDVQG +VLTNF GMD T DKL SL++KWQTLIE  VDV+TTD Y+LR+ CIGFTK++ NQ+K+TCYAQ+SQIR +R+KM +IM+ +A+ CDL+ELV KFIPE I  EI KA  SI+P+QNVY+RKVK LK PKFDL KLME+HGD   ED+GM+++R  +G+EAV
Sbjct:    1 MAVGKNKRISKGRKGSKKKIVDPFTKKEWYDIKAPLLFSTRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQADEDQAFRKIRLRAEDVQGRNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYMLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMVEIMANQATSCDLKELVQKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYK-EDVGMKVDRPADGDEAV 253
[Close]
BLAST of mRNA_Ecto-sp6_S_contig100.696.1 vs. uniprot
Match: A0A7S2W4V3_9STRA (40S ribosomal protein S3a n=2 Tax=Sar TaxID=2698737 RepID=A0A7S2W4V3_9STRA)

HSP 1 Score: 332 bits (851), Expect = 2.140e-109
Identity = 166/247 (67.21%), Postives = 197/247 (79.76%), Query Frame = 3 
Query:   33 MAIGKTNKKGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMERED 773
            MA+GK N+K G+KG KKK VDP   K+WY ++APS+F  R+ G TL TRT+GTKIASE LK RVFE SL DLN + +L YRK++LCC+DVQG  VLTNFHGMD+TRDKLCSLIKKWQTLIE +VDVRTTDGY LR+ CIGFT+K  NQIK+T YAQA Q+R +RKKM DIM+ E  KCDL+ELV KF+ E I  EI KA + IYP+QN YIRKVK LKKPKFDL KLME+H D T  D+G +++RED
Sbjct:    1 MAVGK-NRKLGKKGRKKKVVDPFLKKDWYTVQAPSMFTHRDAGLTLCTRTQGTKIASETLKNRVFEVSLADLNDNAELAYRKIRLCCDDVQGDKVLTNFHGMDMTRDKLCSLIKKWQTLIEARVDVRTTDGYTLRLFCIGFTQKNKNQIKKTWYAQAGQVRQIRKKMVDIMTAECVKCDLKELVAKFVAETIGKEIEKAAEGIYPIQNCYIRKVKLLKKPKFDLVKLMELHAD-TGNDVGAKVDRED 245
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKH7_ECTSI1.020e-179100.0040S ribosomal protein S3a n=2 Tax=Ectocarpus TaxID... [more]
A0A835Z1K4_9STRA1.170e-11971.3240S ribosomal protein S3a n=1 Tax=Tribonema minus ... [more]
A0A7S2Y1J4_9STRA1.770e-11770.8040S ribosomal protein S3a n=1 Tax=Fibrocapsa japon... [more]
C5XD92_SORBI1.580e-11265.8940S ribosomal protein S3a n=6 Tax=Andropogoneae Ta... [more]
F0YJC6_AURAN1.110e-11165.3740S ribosomal protein S3a n=1 Tax=Aureococcus anop... [more]
I1HW94_BRADI1.570e-11065.7540S ribosomal protein S3a n=6 Tax=Pooideae TaxID=1... [more]
RS3A_ORYSJ2.000e-11065.6540S ribosomal protein S3a n=56 Tax=Poaceae TaxID=4... [more]
A0A5J9WLA6_9POAL7.400e-11066.4140S ribosomal protein S3a n=1 Tax=Eragrostis curvu... [more]
I1H8I6_BRADI1.220e-10966.1440S ribosomal protein S3a n=4 Tax=Pooideae TaxID=1... [more]
A0A7S2W4V3_9STRA2.140e-10967.2140S ribosomal protein S3a n=2 Tax=Sar TaxID=269873... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig100contigEcto-sp6_S_contig100:116215..122397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score509.6
Seed ortholog evalue8.5e-142
Seed eggNOG ortholog2880.D7FKH7
Preferred nameRS3A
Model size1320
KEGG rclassRC00434
KEGG koko:K01807,ko:K02984
KEGG ReactionR01056
KEGG Pathwayko00030,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03010,map00030,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map03010
KEGG ModuleM00004,M00007,M00165,M00167,M00177,M00179,M00580
Hectar predicted targeting categoryother localisation
GOsGO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0019538,GO:0022626,GO:0022627,GO:0030054,GO:0030312,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0034645,GO:0042788,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0055044,GO:0070013,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons8
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG1890@1,KOG1628@2759
Ec32 ortholog descriptionRibosomal protein S3Ae
Ec32 orthologEc-12_002020.1
EC5.3.1.6
Cds size774
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig100.696.1prot_Ecto-sp6_S_contig100.696.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig100 116247..121883 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348721.316823-UTR-Ecto-sp6_S_contig100:116214..1162461682348721.316823-UTR-Ecto-sp6_S_contig100:116214..116246Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig100 116215..116246 +
1682348721.3912039-UTR-Ecto-sp6_S_contig100:121883..1223971682348721.3912039-UTR-Ecto-sp6_S_contig100:121883..122397Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig100 121884..122397 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348721.326429-CDS-Ecto-sp6_S_contig100:116246..1162561682348721.326429-CDS-Ecto-sp6_S_contig100:116246..116256Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 116247..116256 +
1682348721.3342755-CDS-Ecto-sp6_S_contig100:116808..1168541682348721.3342755-CDS-Ecto-sp6_S_contig100:116808..116854Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 116809..116854 +
1682348721.344607-CDS-Ecto-sp6_S_contig100:117663..1177671682348721.344607-CDS-Ecto-sp6_S_contig100:117663..117767Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 117664..117767 +
1682348721.3519332-CDS-Ecto-sp6_S_contig100:118351..1184251682348721.3519332-CDS-Ecto-sp6_S_contig100:118351..118425Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 118352..118425 +
1682348721.359416-CDS-Ecto-sp6_S_contig100:119612..1197861682348721.359416-CDS-Ecto-sp6_S_contig100:119612..119786Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 119613..119786 +
1682348721.3667831-CDS-Ecto-sp6_S_contig100:120372..1205241682348721.3667831-CDS-Ecto-sp6_S_contig100:120372..120524Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 120373..120524 +
1682348721.3740535-CDS-Ecto-sp6_S_contig100:121103..1212131682348721.3740535-CDS-Ecto-sp6_S_contig100:121103..121213Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 121104..121213 +
1682348721.3811646-CDS-Ecto-sp6_S_contig100:121779..1218831682348721.3811646-CDS-Ecto-sp6_S_contig100:121779..121883Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 121780..121883 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig100.696.1

>prot_Ecto-sp6_S_contig100.696.1 ID=prot_Ecto-sp6_S_contig100.696.1|Name=mRNA_Ecto-sp6_S_contig100.696.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=258bp
MAIGKTNKKGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRT
KGTKIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFH
GMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIK
QTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAV
QSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMEREDEGE
EAVVADE*
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mRNA from alignment at Ecto-sp6_S_contig100:116215..122397+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig100.696.1 ID=mRNA_Ecto-sp6_S_contig100.696.1|Name=mRNA_Ecto-sp6_S_contig100.696.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=6183bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:116215..122397+ (Ectocarpus species6 EcLAC_371)
GCGAGCTCCCCCTCCTCGCACTCGGCGCAACCATGGCGATCGGTGAGTCC
ATGCAAGGATAGCACGCTGATGGAGCTTGGGGTTAGCCGGGATTTGCGGT
GGAAATGGTACCTGAGATTCCTTATGGCCCGCGATTGCCTTGACTGGATT
AGGGGCCCATGTCGAGGCTGGCCTCTTTCGCTTGGTGGTGGATGCGCAAC
GTTGGACTTGCATCGACGGAGCTGTCAGATGCACACACCATACAGACACC
GAGAGGAGGATGGAGGTGTCAAGAGTGTACCTTGTTTGCTTTGTGGCCTC
CTTGCGTACGGCGTTGTCCTCACACGAAAATGTCCGCCGTAGCGTGCAGG
GCGTGTGGCTCTCATTTCTTCATCGCTGCCGCCGCCGCGCGGTAGCGTGG
AGAAAAGATGGCCACGACAAAAGGTATATCACACACCGGGGTTGTCCACG
ACGCCATGCCCTCTTTCACAGCTGCCATCCTTTGCTGGTGGTTCACGACT
TTCGTTCCCCCGCTGTTCTGAGGAAAACACCTGTGCTGCTGCTGCTCCTG
CTGCTGTTGTGTCACTTTCCCTCTCCTTGCTTCGTGTGTTGCAGGCAAGA
CCAACAAGAAGGGCGGCCGAAAGGGCAACAAGAAGAAGACGTGAGTTTGT
TGTGTTGGGAGTGTTGGAGAAAGTCGTGTGGGTGGGTGATAAAAGGCTTT
TGGTGTCGTCGGCAATCTTTTATCGAATTGGTGGGGACGCCAGACGTTCC
CATCCTGGTGTCGCAGGTGCTGCTTAAAAGTATGGATTGCATACGCTTTG
CTTTTGAATATCGACTGCTGCTGTGGGTTACGTCGTTCTACTCGAGTAGA
CACGAAACGGTGGCGAAAGTTGCCACTAAATTGGAAGCAAGTCGTTGCTG
GTTGCACGCCAGTCGACCACACGTTGTTGCGGCGGCTGTACGGCAGCAAC
TACGTTTTGCTACCCTGTTGACGTTGTCGGTGCTCCTTGTCTCAACTCTG
CGCCGTGTGCGTGTTGCCGTGTTACCTGGTGGGTACCGTAGTACTGCTGT
ACCCAAGAAATGGCCCATTTGAAGAACGTGAAAACCTCGTTTCCTTCAGT
TGATTAAAAGAAGTCAGGTGCCCATCAACATTAGATGACCCACTACTCAC
GCGGGCTCCACACACGTTCGCGTCAGGTCTTGACAGGGTTGCCCAGGGCT
GGCAGAGGATGACCGTAGAAAACTGAAGGCAATATCTACTTCCGTTTTTC
TCGGATACAGGCTTGGAACACCGATATTTTGTCGCTTGCAAGGCCGGCCT
CCTCGGAGTGCAAAACTGGCCGCCCGCGTTTCCGATAATTGACCAAACTT
ACCGGTGTAGCAGTTTTCCAGCATCCGGCACAGAGTAGTCACCCTCGCGA
GCATTTCGCGTTTTTTTGTTGTGGTTCTTTTGCGGCTTGCCGACGGCAGC
GTGGACCCCATGACCCTCAAGGAGTGGTACGACATCAAGGCGCCCTCCAT
CTTCCAAGTGCGCAACCCGGGCAAGACTCTTGTCACGCGTACCAAGGGAA
CTAGTGAGTTCACTTGTCTCTTTTCCCTTTGTTGCATCCCGCTCCGAAGG
AAGAAGAGGATATAGGATGGGAGAAAGATAACAAACGTCTGCCGTCATCC
TCGTGTGCTTGTCTTTTTTTTCTTTTTTCTTTTTTTACTTTGCGGGCGTC
ATGCGCGTTGCGGTCTCCGCCAGCCTGGCGGCCACCTTACACCCGAGCGA
ATCTAGCTCACCGGGTTGGTTTTGCTTGTCTATGCGGATGAATAGAGGCG
CTCAAGCACAACCGTTGTGAGCCGTATGCACAGCTCGGAACGTGTAGTAT
CCTGCCCCCTTGTGTCATGCAGTGTTTGCGCCCTGTACTCACGTGAGCGC
ACGCTGCTTGGCCTCCAGCCCGTGACTAAATAGGTTTGTGTAGCAACTGA
CCACCACCGCAATCCCACCGCAGTCGTATGTGCCGAACACCAACGGGACA
GGTTGTTAGTCCCTGGCGTTTCTGTTGTCATTCTCATCCCCCCCCCGCCT
GTTCTGAAAAGTTCTCCTTCACGTTTGGATGCGTCTGCTGTTGTTACCGC
TGTTGCCGCCGCCACCGCCGGTCGCTGGTCGGAGCAGAGATCGCTTCGGA
GGGGCTTAAGGGGCGTGTGTTCGAGTTCTCTCTCGGAGACCTTAACGCCG
ACGAGGACCTGGTGAGGAGCAGTTGTTTGGTGCAAGGATCTTCCGAAGAG
CTTATTTCCTCTCGGAGGCGAAAACCTCAAGATCATCTCTCGTGTCGAAT
CCCCCCCCCACCCTCCGGGGTGCTTACTGTAGTAAATTGACCCTTCTGGT
CACGATTTGTAATTGCACTACGGTTGCTGTTGTAGACACAGTCTCCTCAA
GTGCCGTTTGCTTTTCTCTGTTGGATACCAAAGCGAGCGCAGGACCGTCG
TCGGTTACATGAGGAGTTGGACCCCTGAATGTGGCGTGTTTTTTCTACAA
CGCCCTTTGTAACAGCAGTATTGAGTTTGGACTTGAACGGCCGCTTCGGC
GCTTCGTACTGTGTTCAATTGTGTACTTTATTCGCAATTTCGATTGGCGG
ACGAATGCCCGGTTCGGTTCCCTTTGAAAGTATACTGGAAACATAGCCTC
GGCGCAGTTGAATTAAAGGATGTGGTGCGTGTTTAGTATTTTCTCTAGTC
TACAATCTCCATTTGCCGCTGATGAGCACTTTATGGGGCACCGCCCGCCG
TATTCCTCTTTGTTTGGACCCTGTGGGGACCTGATCGAATGGGTGACCAA
AACAATGACCAATTCAGTTTGCCGTTGCTGTGGTGTTGACATGTCAGATA
CCGATACTAGCCCTAATCGTACTTTTAGATTTCCACCCTCTTTCGGGTTG
TGAGCAAAGGCACTTTATTGTTTGGTTCGGTATCCTAAGCGTCCTCTGGG
ACTCTAGAATCAGAGGCGCGGGCAAAGCCCTCAGTGGTCTCCCAAGCTCG
GAACATTCGTGGAATACTCACGGCGAGGAGACCGGGCATAGGCAGACGTT
GACGAGGGCAAGCAGTAGTGACCTAACTCACAGGCACAAAGGTTATTCTA
AGCCCACAAGGCCGCCCTTACGGGAGGTGTTGTCGGGTTCAGCAGAGTCT
TGCCCGTCCGTTGCGGCAGACGACGTTTATTGGGGAAAGATCGACTGTTC
GCACGCAGCGACGATCATGGTGGTGCTTGGTTTTTCCAGAATATGCACAA
GCTCTTGCGGTTGACCTTCGAGACTGACCCAGTACAGTGTAGAGGTGGCC
CAAGCCTCGCTTGGTGCCTGTTTTTTGCAGCTTCCCGAACTCGCCCACCC
TGCGGCATGACTGATGTCTTGTTTCTTGCTCCTCCCTCTTTTTCTCAGGG
GTACCGGAAGGTGAAGCTGTGCTGCGAGGACGTCCAGGGCACCTCGGTCC
TCACCAACTTCCACGGAATGGACCTCACCCGCGACAAGCTCTGCTCGCTC
ATCAAGAAGTGGCAGACGCTTATCGAGGGACAGGTGGACGTCCGCACGAC
CGATGGCTACCTCCTCCGCATCGTGAGTGTACAAGTACAAACGAAAACAC
ACGGACTCGCCTTTTTTGTGCTTGAGGAAGGAAAAGCAGGAACGGCTCTT
TGTCAAACAGCTGGCTGGCGCGGGGATAAGAAGAAAGGCCGCTTCCATGG
TGTTTTTGTTTTCTAACCGGTGCTGGTACAAAATCGCTGTGTTCGTTCTG
GTGGTTCAGCTACGGGTTCGAGTTTGGCCGCGGAAAATATTATGGACGGC
AGTGTTGTCGTTAGGCACGCCTCTTGTTTTAACAGCGGCCCTGTCCCCTC
CGTTGTTGTCGTGCCGACACCAACCTGTTGGGCGCGTACACACGCGTTGT
TTCGCCCTTGACAACATGTTGAAGAAACGTATATACTTGTAAGATTGTCA
CCCTCATGTACGGCAGTCGATAGCGATTCTCGTTGCACATCGACTGTTGG
CCAGCCTGACCTTTCCTTTCGGCCCACAAATCGAAGGAGGCTAGCTTGAC
TCAGGCTCATGGCCGCAAGCCCGCTCCCTCTTCTCTACGGATGACGTCAC
TATGTACCACGTCCGCTTTTTGGTCCCGTTGGTCGACCTGCGTCGTGTTT
TGGCGCAGTCTTGCATCGGCTTCACCAAGAAGCAGGACAACCAGATCAAG
CAGACTTGCTACGCGCAGGCGTCGCAGATCCGAGCGGTGCGCAAGAAGAT
GTGCGACATCATGTCGGAGGAGGCCTCCAAGTGCGACCTCAGGGAGCTCG
TGCTCAAGTTGTGAGTGCCTCTCCgCGCTACGAACCACGTTAATCAACAC
CTTGGTATGAAGTTACCCCGGCGCGTGTTTTTGCGTGCCGCTCACGTGGG
TTGGTGTGAAATCGTATCCCGCATTGTTGGCGAGAGTATGCATACATCCA
ACGAAAGAGTTTTTTTCAATGCCTCCAATTCTTGAATGCCACTTGGGGGG
GGTTCGTCAGCCGCTAATGAAAAATGACGTTTTAGTGAACGGATGGATGC
ATTGCCACGGAATACGGAGGCATTGACACACAAGAGAAGGTCAAAGCGCC
GGTAGGAGCAAATCTTGCCCCATGGCTTTATTAACTGCTGGGTGAATGAC
ACGGAACAACATGAACATCTCAGTGAAGCAGCAAGCGATCTTAACCAACA
CCGCGCGCCGCGACCAGTGCGTATGCTTCTGGCTTCCCTACCCGCCCTTT
GTGCGGGCAAGGTCTTGATGGGACTTCTCCTTGTACCTCTCCGCGATATG
ACATGAAATCACGTGTTGTTCTTCCCCCGCCTCGCACTCCTGCACCTTGT
TGACCATGGCCGTGTGCGCGATGTCGTGGTTTGTTGCAGCATCCCCGAGA
ACATCTCCGGAGAGATCCTCAAGGCTGTGCAGAGCATCTACCCCATGCAG
AACGTCTACATCCGCAAGGTCAAGGCGCTCAAGAAGCCCAAGTTCGACCG
TGAGTATTGTGCCCGTTTTGTTGCGTAACCCCGGATGATGTCCAGTCCTG
GGGACTCTCGACTTCAGCGCGGCGTGTGCCCCGGCGATGTCCTCAAGGAG
GTGTTGGAAGATGTACATCTATTGCTGTACATGTACACAGCCGCGTTTTT
TGTTTTTGTCGGATAGTTTTGGCTTCATCATTATCGCGTACCTTAAACTA
AAAACTAAACAACGCCGACTCTAAAGACACTATTAATAATTTTATTCACG
CATCTGACGGGAAATATTCATTTGCGTGGGCATTTCGTGTGTGCCAAGTA
TTCTCGATTGGGTTTTGCTCCCTCTGCGTTTGTGTGGATTTGAGTATCGT
GCGTCGGAGGCCGGCCCGCGACAACAGAAGTCATCAGCAAGGATGGTGCC
ATCTCCAGTCCTCTCCCAAAGTCGTCACTCTCGAGTTATTTTATATTTTG
TTTCAAAACCAACCCCGTTAAACTCGGAGATCCACCGCTGGGTAGCACAG
GACACGTGTATCGGCTGGCCTCATGACAACCCCGCTGCCTGCCCCCCTTT
ACCTTGTCGCTGCAGTCACCAAGCTGATGGAGATGCACGGTGACAACACC
ACCGAGGACATCGGCATGGAGATGGAGAGGGAGGACGAGGGCGAGGAAGC
TGTCGTTGCGGACGAGTAAAGCCCGACCCGCTAGCGGCGTGCTTTTCGCA
CTTCTTTCAGCCTTCCTTCGTTCGACCGGGCCACTCAGTCTCCTCGACTC
CTATTGTTGCAGATGTTGCCGTTGAACAGCAGTGTCGACCGTTCTTTAGC
GGAGATGTTGGGCGCGTTTGTTTCTGGGGAAAGGGATGATGCGGGGTGAG
GGGTCCTTCTCTTTTGCGTGGTTGGGTGGGGGTGTTGGGGGACACTTTCC
TCCTGGCCGGGAGGGTGCCGACTCTTTTGGGGGTCGCGCCCACTTAGCAT
CACCCTGCCGAGGATTGAATGGCTGCAAGCTCACAGAATTTGTTCACAGA
CAACTTGGCGCCTTCTCTTTTTGCAATCCGGTCGCTGCGGACGTATGTAC
GTGAGTCCATGTTCCCCGCCCCGGAGGATGGATCATGACTCCGTTTCGAC
GGCCGCCTGCACAAACGCATCGGTCGTTGGGCACGCACGACTTCCCGCCC
GTGATTCGCGTTGCTGTTTCGGGCATACACGCC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:116215..122397+

>mRNA_Ecto-sp6_S_contig100.696.1 ID=mRNA_Ecto-sp6_S_contig100.696.1|Name=mRNA_Ecto-sp6_S_contig100.696.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=774bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:116215..122397+ (Ectocarpus species6 EcLAC_371)
ATGGCGATCGGCAAGACCAACAAGAAGGGCGGCCGAAAGGGCAACAAGAA
GAAGACCGTGGACCCCATGACCCTCAAGGAGTGGTACGACATCAAGGCGC
CCTCCATCTTCCAAGTGCGCAACCCGGGCAAGACTCTTGTCACGCGTACC
AAGGGAACTAAGATCGCTTCGGAGGGGCTTAAGGGGCGTGTGTTCGAGTT
CTCTCTCGGAGACCTTAACGCCGACGAGGACCTGGGGTACCGGAAGGTGA
AGCTGTGCTGCGAGGACGTCCAGGGCACCTCGGTCCTCACCAACTTCCAC
GGAATGGACCTCACCCGCGACAAGCTCTGCTCGCTCATCAAGAAGTGGCA
GACGCTTATCGAGGGACAGGTGGACGTCCGCACGACCGATGGCTACCTCC
TCCGCATCTCTTGCATCGGCTTCACCAAGAAGCAGGACAACCAGATCAAG
CAGACTTGCTACGCGCAGGCGTCGCAGATCCGAGCGGTGCGCAAGAAGAT
GTGCGACATCATGTCGGAGGAGGCCTCCAAGTGCGACCTCAGGGAGCTCG
TGCTCAAGTTCATCCCCGAGAACATCTCCGGAGAGATCCTCAAGGCTGTG
CAGAGCATCTACCCCATGCAGAACGTCTACATCCGCAAGGTCAAGGCGCT
CAAGAAGCCCAAGTTCGACCTCACCAAGCTGATGGAGATGCACGGTGACA
ACACCACCGAGGACATCGGCATGGAGATGGAGAGGGAGGACGAGGGCGAG
GAAGCTGTCGTTGCGGACGAGTAA
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