mRNA_Ecto-sp6_S_contig100.689.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig100.689.1
Unique NamemRNA_Ecto-sp6_S_contig100.689.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig100.689.1 vs. uniprot
Match: D7FKI3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKI3_ECTSI)

HSP 1 Score: 333 bits (855), Expect = 1.460e-114
Identity = 196/199 (98.49%), Postives = 196/199 (98.49%), Query Frame = 1 
Query:   40 MTPPTPPVQLTGHAARAVISTERRVQIWDQFYISFKETIPPNQWCTRQELVTAACSGTTGVKFTVDELTEVIRGRKHKREAGIDSQKVDGEWLYSPAAKTPPGPGXXXXXXXXXXXXXXXXXXXXXKRASPSGGVDPMTTRLRSGAKKARPSPRARSGNSDRNGQKGGGAGLGGGLFRFGGGGVGAADEEGG-WSCAVM 633
            MTPPTPPVQLTGHAARAVISTERRVQIWDQFYISFKETIPPNQWCTRQELVTAACSGTTGVKFTVDELTEVIRGRKHKREAGIDSQKVDGEWLYSPAAKTPPGPGXXXXXXXXXXXXXXXXXXX  KRASPSGGVDPMTTRLRSGAKKARPSPRARSGNSDRNGQKGGGAGLGGGLFRFGGGGVGAADEEGG WSCAVM
Sbjct:    1 MTPPTPPVQLTGHAARAVISTERRVQIWDQFYISFKETIPPNQWCTRQELVTAACSGTTGVKFTVDELTEVIRGRKHKREAGIDSQKVDGEWLYSPAAKTPPGPGXXXXXXXXXXXXXXXXXXX--KRASPSGGVDPMTTRLRSGAKKARPSPRARSGNSDRNGQKGGGAGLGGGLFRFGGGGVGAADEEGGGWSCAVM 197
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BLAST of mRNA_Ecto-sp6_S_contig100.689.1 vs. uniprot
Match: A0A6H5KU79_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU79_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 6.280e-26
Identity = 59/62 (95.16%), Postives = 60/62 (96.77%), Query Frame = 1 
Query:  451 MTTRLRSGAKKARPSPRARSGNSDRNGQKGGGAGLGGGLFRFGGGGVGAADEEGG-WSCAVM 633
            MTTRLRSGAKKARPS RARSGNSDRNGQKGGG+GLGGGLFRFGGGGVGAADEEGG WSCAVM
Sbjct:    1 MTTRLRSGAKKARPSSRARSGNSDRNGQKGGGSGLGGGLFRFGGGGVGAADEEGGGWSCAVM 62
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig100.689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKI3_ECTSI1.460e-11498.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KU79_9PHAE6.280e-2695.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig100contigEcto-sp6_S_contig100:71103..73552 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size637
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_001960.2
Cds size636
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348720.5365195-CDS-Ecto-sp6_S_contig100:71102..714151682348720.5365195-CDS-Ecto-sp6_S_contig100:71102..71415Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 71103..71415 -
1682348720.5468752-CDS-Ecto-sp6_S_contig100:72601..728581682348720.5468752-CDS-Ecto-sp6_S_contig100:72601..72858Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 72602..72858 -
1682348720.5556622-CDS-Ecto-sp6_S_contig100:73486..735521682348720.5556622-CDS-Ecto-sp6_S_contig100:73486..73552Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig100 73487..73552 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig100.689.1prot_Ecto-sp6_S_contig100.689.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig100 71103..73552 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig100.689.1

>prot_Ecto-sp6_S_contig100.689.1 ID=prot_Ecto-sp6_S_contig100.689.1|Name=mRNA_Ecto-sp6_S_contig100.689.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=212bp
CADVFHVTSRCWRMTPPTPPVQLTGHAARAVISTERRVQIWDQFYISFKE
TIPPNQWCTRQELVTAACSGTTGVKFTVDELTEVIRGRKHKREAGIDSQK
VDGEWLYSPAAKTPPGPGAAAAAAAASAAAGGSAASASRKRASPSGGVDP
MTTRLRSGAKKARPSPRARSGNSDRNGQKGGGAGLGGGLFRFGGGGVGAA
DEEGGWSCAVM*
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mRNA from alignment at Ecto-sp6_S_contig100:71103..73552-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig100.689.1 ID=mRNA_Ecto-sp6_S_contig100.689.1|Name=mRNA_Ecto-sp6_S_contig100.689.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=2450bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:71103..73552- (Ectocarpus species6 EcLAC_371)
TGCGCAGACGTGTTCCACGTGACTTCGAGGTGCTGGAGAATGACGCCGCC
AACTCCTCCAGTCCAGGTGATGAGGAGAAGGGCCGGAAGCCTCCATGCTT
GGCGACCTGACTCTCTGTCTGCCCAGAATATTGTGTGGGGTTGGTGTTTG
GGGACAAGGCAGGATCGCACTGAAGATCCACTGCTCCCTGGCTTTTGGCG
CCATCCCGCCCGACAGCTTGGTTGAGCGAGGCGCGCGTCGTTCGCCCTAT
GCGCTCACCAGCAGATCCAGGGATAGTTGGCGCCTTGGGGTGTTGTCGTC
AAACTTCGGCAGTTTTTTCAAAATCCCCCCGCCTTTTTTTTTTCAGACAC
GACGTTGCAGGGAGGTCACGCACGAAACGCGGGGTGGTTGGCCGCCGACT
GCCGGTGCGCCTCTATTTGCCGATGCCACCGAACGCCGACCGTCACACAC
AAAGACCGGGGGGTGTTGGGATCGACTCTTTTGGCCGATCGGATACCCCA
TGTTTGTTTCTGTAAAACGGTCGTCAAATACGACAACTACCACCCTGTCC
CACGGGACCCCGACCTTTTTCCGGCGGGCGAATCGCATCGTTTGGAGCCG
TCGACAGTCCGCTTAAGCAGGCGGGGCGACATGATTAGACTAACGATCAT
CTTACTTTTCCCCTCTCCCCTCTTTTGCGCCGCCGTTTGCGAAGCTAACC
GGGCATGCCGCGCGAGCCGTTATCTCGACGGAGCGAAGGGTCCAGATATG
GGACCAGTTCTACATCAGCTTCAAGGAGACCATTCCGCCCAACCAGTGGT
GCACGAGACAGGAGCTGGTCACGGCGGCGTGCAGCGGCACAACCGGGGTC
AAGTTTACGGTCGACGAGCTGACCGAGGTCATCAGAGGGCGGAAACACAA
GAGGGAAGCCGGCATCGACAGCCAAAAGGTCGACGGGGAATGGCTCTACA
GGTGTGTGGGGGGAGTGGGGAGGGTTCTGCTGATGTTTTTGCTTACACCC
AGGGATCTTGGAAGATCTGGAATTATTACTCTCGCACAGCTGCTCTACGA
CTCTGCTCCTCACAATGCCATCTACGATAACTTCACCACTGTTGGTGCGG
TTTCCAGCGCTCCCCCGTAAGCGAGCGTGGTCATAATCTGCTGTGTTGTT
GCCGAATACATTATTTGGTTACATGTTCCAGTTCGCCGCGAAGAAAAGGT
AACGATTGTGACTGCCGTCCTGCATGCATACATGCGCTGCGTGACACCCG
CAGGATTTTGCCCAGTGCCCGCGACGTACTTCGCACTCAAAGCGCTTATC
CCAGTCCACCGTACCACCTTTGGATCGAACGCCGACTATGGTACCCATCA
CGTTCCATCCGGCTCTGTGCTGTCGGTGCTCTTACACCCTGTCGGGGTGG
CTTTCCGGACTAAGAATCAGAATTATTTAGACAAAGTTCCAAATTTACCA
CGGACCACGGACAGCAGTAGTCTCCATGTGCTCACTTGAGTGTCATGCAT
GACTCTACCCGGGTTGGCGAGGAGACGTTCCTCTCTTGCAAACTCGCTCT
TTTTTATCACTCGCGCTTAAAAAACAGATTTGGAGGTCGCCCTGCGGTGT
TCTTAATGACACTGCTGTTGCGTTACACAAACGTTTCGTCGAAACAGCCA
ATCAATTCACAGCAAACGCACAGAATGACAAGAGCGGCGATTTCGAGCCC
ATTTTATCCTCGTTTGAGCTATAATAGCAACCTTTTCAACAACCCGCCAG
ATCAGTTATTTGTCCTTTCGCGCTCTCGTGTTGTGTCTGAAAAGACCACA
TAAATCTCACGCCGGAACTCAAGCACTACTAAACGTTGCATGTCTTATTT
TCGATGAGGAGTTGGGAAGCCACCCTCCCCGTCTCCGGCAGCTGTCGTGG
CCGCCAGCCTTGCCAAGCTTGGCAACAACCGAATCCGCTCTTCCCACGAT
CAGCGTCCCGACGAGTACCCCCCCCACCTCGAAGGTTCGTCCCGTCGGCG
GTCAATCCGTCTTCCACGTCTCCTCCACCTCCGCCGCCGGCGGCCAAGCG
CCCCGCCCCTTCGTCGACCGTCAAGCCCAAGCTCAAGCCCAAGACCACAC
CGAAGCGCAACGGGCCCTTGCGGCCCCGCGCTAAGAGCCCGGCGGCGAAG
ACCCCGCCGGGGCCGGGAGCGGCGGCGGCGGCGGCGGCGGCATCTGCGGC
GGCGGGGGGGTCGGCGGCGTCGGCGTCCCGCAAGCGCGCCTCTCCCTCGG
GAGGAGTGGATCCCATGACCACGCGCCTTCGATCGGGAGCTAAGAAGGCT
CGCCCGTCCCCTAGGGCCCGCAGCGGGAACTCCGACAGGAACGGCCAGAA
GGGCGGCGGCGCGGGGTTGGGGGGCGGTTTGTTCAGATTCGGAGGCGGCG
GAGTCGGGGCGGCGGACGAGGAGGGCGGCTGGAGCTGCGCGGTGATGTAA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:71103..73552-

>mRNA_Ecto-sp6_S_contig100.689.1 ID=mRNA_Ecto-sp6_S_contig100.689.1|Name=mRNA_Ecto-sp6_S_contig100.689.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=636bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:71103..73552- (Ectocarpus species6 EcLAC_371)
TGCGCAGACGTGTTCCACGTGACTTCGAGGTGCTGGAGAATGACGCCGCC
AACTCCTCCAGTCCAGCTAACCGGGCATGCCGCGCGAGCCGTTATCTCGA
CGGAGCGAAGGGTCCAGATATGGGACCAGTTCTACATCAGCTTCAAGGAG
ACCATTCCGCCCAACCAGTGGTGCACGAGACAGGAGCTGGTCACGGCGGC
GTGCAGCGGCACAACCGGGGTCAAGTTTACGGTCGACGAGCTGACCGAGG
TCATCAGAGGGCGGAAACACAAGAGGGAAGCCGGCATCGACAGCCAAAAG
GTCGACGGGGAATGGCTCTACAGCCCGGCGGCGAAGACCCCGCCGGGGCC
GGGAGCGGCGGCGGCGGCGGCGGCGGCATCTGCGGCGGCGGGGGGGTCGG
CGGCGTCGGCGTCCCGCAAGCGCGCCTCTCCCTCGGGAGGAGTGGATCCC
ATGACCACGCGCCTTCGATCGGGAGCTAAGAAGGCTCGCCCGTCCCCTAG
GGCCCGCAGCGGGAACTCCGACAGGAACGGCCAGAAGGGCGGCGGCGCGG
GGTTGGGGGGCGGTTTGTTCAGATTCGGAGGCGGCGGAGTCGGGGCGGCG
GACGAGGAGGGCGGCTGGAGCTGCGCGGTGATGTAA
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