mRNA_Ecto-sp6_S_contig100.766.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp6_S_contig100.766.1
Unique Name	mRNA_Ecto-sp6_S_contig100.766.1
Type	mRNA
Organism	Ectocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)

Homology

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BLAST of mRNA_Ecto-sp6_S_contig100.766.1 vs. uniprot
Match: A0A6H5JG83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG83_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 1.350e-37
Identity = 71/75 (94.67%), Postives = 72/75 (96.00%), Query Frame = 3

Query:  258 VPPFRPREVTWNLPPSMLSEASKDAFTNLECLSFSDAVERSGDRFDGVTLPRGLKSVVFGRWCYQHVDKVLWAAS 482
            VPPFRPREVTWNLPPSMLSEASKDAF NLEC+SFSDAVERSGD FDGV LPRGLKSVVFGRWCYQHVDKVLWAAS
Sbjct:   78 VPPFRPREVTWNLPPSMLSEASKDAFKNLECMSFSDAVERSGDSFDGVALPRGLKSVVFGRWCYQHVDKVLWAAS 152

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BLAST of mRNA_Ecto-sp6_S_contig100.766.1 vs. uniprot
Match: D8LF50_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF50_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 2.430e-28
Identity = 58/59 (98.31%), Postives = 58/59 (98.31%), Query Frame = 3

Query:  306 MLSEASKDAFTNLECLSFSDAVERSGDRFDGVTLPRGLKSVVFGRWCYQHVDKVLWAAS 482
            MLSEASKDAFT LECLSFSDAVERSGDRFDGVTLPRGLKSVVFGRWCYQHVDKVLWAAS
Sbjct:    1 MLSEASKDAFTKLECLSFSDAVERSGDRFDGVTLPRGLKSVVFGRWCYQHVDKVLWAAS 59

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BLAST of mRNA_Ecto-sp6_S_contig100.766.1 vs. uniprot
Match: D7G0Z9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z9_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 1.060e-14
Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = 1

Query:   10 SRYIGTFIVALNETCGGKE--WYISTVQLQLASLEFCVACRSVPTLHLTVEEGTPRHLWA 183
            S+ +  F+VALN+TC G+E  WY ST++LQL SLEFC ACR VPTLH+ V+  TPR LW+
Sbjct:   39 SKCLDAFVVALNQTCDGQEKRWYASTLELQLVSLEFCGACRHVPTLHVRVDRRTPRSLWS 98

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BLAST of mRNA_Ecto-sp6_S_contig100.766.1 vs. uniprot
Match: A0A6H5JFC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC0_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.080e-13
Identity = 42/78 (53.85%), Postives = 51/78 (65.38%), Query Frame = 1

Query:    1 AGSSRYIGTFIVALNETCGGKEWYISTVQLQLASLEFCVACRSVPTLHLTVEEGTPRHLWADNCSDQGNARGSSGGSS 234
            AG SR +  F VALN+ C G  WY+ST QLQL+SL FCVACRSVPT+HL V+  TP  L++ +  D    R    GSS
Sbjct:   25 AGPSRCLDAFKVALNQACDGGGWYVSTEQLQLSSLPFCVACRSVPTMHLKVDRSTPARLFSGD-DDAAAVRDKGHGSS 101

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BLAST of mRNA_Ecto-sp6_S_contig100.766.1 vs. uniprot
Match: A0A6H5KLV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV1_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 3.310e-13
Identity = 38/62 (61.29%), Postives = 46/62 (74.19%), Query Frame = 1

Query:    4 GSSRYIGTFIVALNETCGGKE--WYISTVQLQLASLEFCVACRSVPTLHLTVEEGTPRHLWA 183
            G S  +  FIVALN+TC G+E  WY ST++LQL SLEFC ACR VPTLH+ V+  TPR LW+
Sbjct:   13 GRSECLRAFIVALNQTCNGQEKRWYASTLELQLVSLEFCGACRRVPTLHVRVDRQTPRSLWS 74

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BLAST of mRNA_Ecto-sp6_S_contig100.766.1 vs. uniprot
Match: D7G3G0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3G0_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 5.920e-12
Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 1

Query:    4 GSSRYIGTFIVALNETCGGKE--WYISTVQLQLASLEFCVACRSVPTLHLTVEEGTPR 171
            G  + +  FIVALN+TC G+E  WY ST++LQL SL+FC ACR  PTLH+ V+  TPR
Sbjct:    5 GRRKCLDAFIVALNQTCDGRENRWYASTLELQLVSLKFCGACRRFPTLHVRVDRQTPR 62

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BLAST of mRNA_Ecto-sp6_S_contig100.766.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 2.050e-11
Identity = 37/58 (63.79%), Postives = 41/58 (70.69%), Query Frame = 1

Query:   10 SRYIGTFIVALNETCGGKEWYISTVQLQLASLEFCVACRSVPTLHLTVEEGTPRHLWA 183
            S  + T  VALNETC GK WY ST +LQLASLE C+ACR   TLHLTV+  TPR L A
Sbjct:  134 SSCLKTLTVALNETCDGKSWYTSTKELQLASLELCMACRHYQTLHLTVDAHTPRRLLA 191

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BLAST of mRNA_Ecto-sp6_S_contig100.766.1 vs. uniprot
Match: A0A6H5JRF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 3.130e-11
Identity = 34/51 (66.67%), Postives = 40/51 (78.43%), Query Frame = 1

Query:   31 IVALNETCGGKEWYISTVQLQLASLEFCVACRSVPTLHLTVEEGTPRHLWA 183
            IVALNETC GK WY ST +LQLASL+FC+ACR+  T+HL V+E  PR L A
Sbjct:   56 IVALNETCDGKSWYTSTKELQLASLDFCIACRNCQTVHLNVDEQIPRRLLA 106

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BLAST of mRNA_Ecto-sp6_S_contig100.766.1 vs. uniprot
Match: D7FXS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXS2_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 3.270e-11
Identity = 34/67 (50.75%), Postives = 42/67 (62.69%), Query Frame = 1

Query:    4 GSSRYIGTFIVALNETCGGKEWYISTVQLQLASLEFCVACRSVPTLHLTVEEG-TPRHLWADNCSDQ 201
            G  R +  F VALN +C G  WY ST +LQLASL+FCV CR VP+LHL V     P  LW D+ + +
Sbjct:    3 GPGRCLEAFAVALNTSCDGNVWYTSTKELQLASLQFCVKCRKVPSLHLAVNNAHVPARLWNDHAATE 69

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BLAST of mRNA_Ecto-sp6_S_contig100.766.1 vs. uniprot
Match: A0A6H5JEK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEK4_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 3.560e-11
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 1

Query:    1 AGSSRYIGTFIVALNETCGGKEWYISTVQLQLASLEFCVACRSVPTLHLTVEEGTPRHLWA 183
            AG +R +  FIVALN++ GGK+W  S   LQLASL FCVACR+VP+  +TV+ GTP  LW+
Sbjct:    6 AGPNRCLDAFIVALNQSWGGKKWCTSVATLQLASLPFCVACRNVPSPCVTVDTGTPPRLWS 66

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp6_S_contig100.766.1 vs. uniprot

BLAST of mRNA_Ecto-sp6_S_contig100.766.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JG83_9PHAE	1.350e-37	94.67	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LF50_ECTSI	2.430e-28	98.31	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7G0Z9_ECTSI	1.060e-14	60.00	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JFC0_9PHAE	1.080e-13	53.85	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KLV1_9PHAE	3.310e-13	61.29	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G3G0_ECTSI	5.920e-12	56.90	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KPY7_9PHAE	2.050e-11	63.79	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JRF9_9PHAE	3.130e-11	66.67	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FXS2_ECTSI	3.270e-11	50.75	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JEK4_9PHAE	3.560e-11	57.38	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp6_S_contig100	contig	Ecto-sp6_S_contig100:634606..636215 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species6 EcLAC_371 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Model size	1478
Hectar predicted targeting category	other localisation
Exons	2
Cds size	1173

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682348719.7923932-UTR-Ecto-sp6_S_contig100:634605..634910	1682348719.7923932-UTR-Ecto-sp6_S_contig100:634605..634910	Ectocarpus species6 EcLAC_371	UTR	Ecto-sp6_S_contig100 634606..634910 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682348719.8014846-CDS-Ecto-sp6_S_contig100:634910..635795	1682348719.8014846-CDS-Ecto-sp6_S_contig100:634910..635795	Ectocarpus species6 EcLAC_371	CDS	Ecto-sp6_S_contig100 634911..635795 +
1682348719.8109138-CDS-Ecto-sp6_S_contig100:635927..636215	1682348719.8109138-CDS-Ecto-sp6_S_contig100:635927..636215	Ectocarpus species6 EcLAC_371	CDS	Ecto-sp6_S_contig100 635928..636215 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp6_S_contig100.766.1	prot_Ecto-sp6_S_contig100.766.1	Ectocarpus species6 EcLAC_371	polypeptide	Ecto-sp6_S_contig100 634911..636215 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp6_S_contig100:634606..636215+
coding sequence from alignment at Ecto-sp6_S_contig100:634606..636215+

protein sequence of mRNA_Ecto-sp6_S_contig100.766.1

>prot_Ecto-sp6_S_contig100.766.1 ID=prot_Ecto-sp6_S_contig100.766.1|Name=mRNA_Ecto-sp6_S_contig100.766.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=391bp
MLSEASKDAFTNLECLSFSDAVERSGDRFDGVTLPRGLKSVVFGRWCYQH
VDKVLWAASLKQITFGNKFNRSIKRIVWPTSLERIVFGWNFNQPVEGVHW
PASLRQLNLGECFNHPVEEVAWPSSLEEIVFPGSFDQPITRVKWPASLRH
LKFGSGFNQPIHQVSWPGSLKKLVFSEKFNQPIHLVSWPTAVEVMSLGLM
FDQPVNEVSWPASLKQLVISGRFNQPIHLVSWPTSLEKIRVGLLFDQPIS
EVSWPASLKELQFLGKFNQPIHLVSWPTSLKKMVFGNSFDQPINEVSWPA
SLKELQFQEKFNQPIHQVSWPTSLEKMFFGNSFDQPINEVLWPASLKELV
ITGKFNQPLHQVRWPTSLEKLVVGDAEATPLLTEFNQLRS*

mRNA from alignment at Ecto-sp6_S_contig100:634606..636215+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp6_S_contig100.766.1 ID=mRNA_Ecto-sp6_S_contig100.766.1|Name=mRNA_Ecto-sp6_S_contig100.766.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1610bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:634606..636215+ (Ectocarpus species6 EcLAC_371)
GCAGGAAGCAGCCGGTACATTGGCACCTTCATTGTGGCCCTTAACGAGAC
GTGTGGCGGAAAGGAATGGTACATCTCGACGGTGCAACTCCAGCTCGCAT
CGTTGGAATTCTGCGTGGCTTGCCGAAGCGTTCCTACGTTGCACTTGACT
GTGGAGGAAGGCACGCCTAGGCATCTTTGGGCTGACAACTGCAGCGATCA
GGGCAACGCCCGCGGGAGTAGTGGTGGAAGTTCCGACGGGCGGAGCGTTC
TTGTGCGGTGCCTCCTTTTCGACCCCGCGAGGTGACATGGAACCTTCCAC
CTTCGATGCTGAGCGAAGCGAGTAAGGATGCTTTCACAAACCTGGAATGC
TTGTCGTTCAGCGACGCAGTCGAGCGCAGTGGCGACAGGTTTGACGGGGT
CACCCTACCTCGTGGTTTAAAGAGCGTGGTCTTCGGTAGATGGTGCTATC
AGCATGTCGACAAAGTTTTGTGGGCGGCATCTCTGAAGCAGATAACCTTT
GGCAACAAGTTCAACCGCTCGATCAAGAGAATAGTCTGGCCAACATCGCT
GGAACGAATTGTATTTGGGTGGAACTTCAATCAGCCAGTGGAAGGGGTCC
ATTGGCCAGCGTCACTACGACAGCTCAACCTCGGCGAATGCTTCAACCAC
CCGGTTGAAGAGGTCGCGTGGCCGTCATCACTGGAAGAAATCGTGTTCCC
GGGAAGCTTCGACCAGCCAATTACAAGGGTCAAGTGGCCAGCGTCATTGC
GACATCTCAAGTTTGGGTCTGGCTTCAATCAGCCAATTCACCAGGTCAGC
TGGCCGGGATCGCTGAAAAAACTCGTGTTCTCAGAAAAATTCAACCAGCC
AATTCACCTCGTCAGCTGGCCGACTGCAGTGGAAGTGATGAGTTTAGGCT
TGATGTTTGACCAGCCAGTCAATGAGGTCAGCTGGCCGGCATCGCTGAAA
CAGCTTGTGATCTCGGGAAGATTCAACCAGCCAATTCACCTGGTCAGCTG
GCCGACTTCACTGGAAAAGATACGTGTTGGCTTATTGTTCGATCAGCCCA
TCAGTGAGGTCTCGTGGCCGGCATCGCTGAAAGAGCTCCAGTTCCTAGGA
AAATTCAACCAGCCTATTCACCTGGTCAGCTGGCCGACTTCACTGAAAAA
AATGGTTTTCGGCAACTCCTTCGATCAACCCATCAACGAGGTCTCGTGGC
CGGCATCGCTGAAAGAACTCCAGTTCCAAGAAAAATTCAACCAGCCAATC
CACCAGGTCAGCTGGCCGCCTTCACTGGAAAAAATGTTTTTCGGCAACTC
CTTCGATCAACCCATCAATGAGGTCTCGTGGCCGGCATCGCTGAAAGAAC
TCCAGTTCCAAGAAAAATTCAACCAGCCAATCCACCAGGTCAGCTGGCCG
ACTTCGCTGGAAAAAATGTTTTTCGGCAACTCCTTCGATCAACCCATCAA
TGAGGTCTTGTGGCCGGCATCACTAAAAGAACTCGTCATCACGGGAAAGT
TCAATCAGCCACTGCACCAGGTCCGTTGGCCGACTTCCCTGGAAAAGTTG
GTTGTAGGCGACGCTGAGGCAACCCCCCTTTTAACCGAATTCAACCAACT
ACGCAGTTGA

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig100:634606..636215+

>mRNA_Ecto-sp6_S_contig100.766.1 ID=mRNA_Ecto-sp6_S_contig100.766.1|Name=mRNA_Ecto-sp6_S_contig100.766.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1173bp|location=Sequence derived from alignment at Ecto-sp6_S_contig100:634606..636215+ (Ectocarpus species6 EcLAC_371)
ATGCTGAGCGAAGCGAGTAAGGATGCTTTCACAAACCTGGAATGCTTGTC
GTTCAGCGACGCAGTCGAGCGCAGTGGCGACAGGTTTGACGGGGTCACCC
TACCTCGTGGTTTAAAGAGCGTGGTCTTCGGTAGATGGTGCTATCAGCAT
GTCGACAAAGTTTTGTGGGCGGCATCTCTGAAGCAGATAACCTTTGGCAA
CAAGTTCAACCGCTCGATCAAGAGAATAGTCTGGCCAACATCGCTGGAAC
GAATTGTATTTGGGTGGAACTTCAATCAGCCAGTGGAAGGGGTCCATTGG
CCAGCGTCACTACGACAGCTCAACCTCGGCGAATGCTTCAACCACCCGGT
TGAAGAGGTCGCGTGGCCGTCATCACTGGAAGAAATCGTGTTCCCGGGAA
GCTTCGACCAGCCAATTACAAGGGTCAAGTGGCCAGCGTCATTGCGACAT
CTCAAGTTTGGGTCTGGCTTCAATCAGCCAATTCACCAGGTCAGCTGGCC
GGGATCGCTGAAAAAACTCGTGTTCTCAGAAAAATTCAACCAGCCAATTC
ACCTCGTCAGCTGGCCGACTGCAGTGGAAGTGATGAGTTTAGGCTTGATG
TTTGACCAGCCAGTCAATGAGGTCAGCTGGCCGGCATCGCTGAAACAGCT
TGTGATCTCGGGAAGATTCAACCAGCCAATTCACCTGGTCAGCTGGCCGA
CTTCACTGGAAAAGATACGTGTTGGCTTATTGTTCGATCAGCCCATCAGT
GAGGTCTCGTGGCCGGCATCGCTGAAAGAGCTCCAGTTCCTAGGAAAATT
CAACCAGCCTATTCACCTGGTCAGCTGGCCGACTTCACTGAAAAAAATGG
TTTTCGGCAACTCCTTCGATCAACCCATCAACGAGGTCTCGTGGCCGGCA
TCGCTGAAAGAACTCCAGTTCCAAGAAAAATTCAACCAGCCAATCCACCA
GGTCAGCTGGCCGACTTCGCTGGAAAAAATGTTTTTCGGCAACTCCTTCG
ATCAACCCATCAATGAGGTCTTGTGGCCGGCATCACTAAAAGAACTCGTC
ATCACGGGAAAGTTCAATCAGCCACTGCACCAGGTCCGTTGGCCGACTTC
CCTGGAAAAGTTGGTTGTAGGCGACGCTGAGGCAACCCCCCTTTTAACCG
AATTCAACCAACTACGCAGTTGA