mRNA_Ecto-sp6_S_contig10.536.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.536.1
Unique NamemRNA_Ecto-sp6_S_contig10.536.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig10.536.1 vs. uniprot
Match: A0A6H5JME9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME9_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 2.310e-33
Identity = 130/144 (90.28%), Postives = 130/144 (90.28%), Query Frame = 1 
Query:    1 MVRSVGETLVVDPLFLALSAVSRGGWDGSLAGIAGISAVFSALQLLTELRYYVKGASVVLEPVPVVLVDXXXXXXXXXXXXXXXXXXXXXXXXXXWXXXXXXXXXXXXXXXXXXXXLSSC-----SISDGRSLETASERVASEC 417
            MVRSVGETLVVDPLFLALSAVSRGGWDGSLAGIAGISAVFSALQLLTELRYYVKGAS VLE VPVVL DXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXX         SISDGRSLETASERVA EC
Sbjct:  315 MVRSVGETLVVDPLFLALSAVSRGGWDGSLAGIAGISAVFSALQLLTELRYYVKGASAVLERVPVVLADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSISDGRSLETASERVAREC 458
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BLAST of mRNA_Ecto-sp6_S_contig10.536.1 vs. uniprot
Match: A0A6H5JFA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFA4_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 2.650e-7
Identity = 35/56 (62.50%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    1 MVRSVGETLVVDPLFLALSAVSRGGWDGSLAGIAGISAVFSALQLLTELRYYVKGA 168
            MVR+VGETLVVD LFLALS  S    DG   GI   S +FS L+LLTEL+YYV  A
Sbjct:  367 MVRAVGETLVVDSLFLALSLSSETWEDGVSIGI--FSLIFSVLELLTELQYYVSEA 420
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JME9_9PHAE2.310e-3390.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFA4_9PHAE2.650e-762.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:1214669..1215088 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size420
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-15_003220.1
Cds size420
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348706.2399178-CDS-Ecto-sp6_S_contig10:1214668..12150881682348706.2399178-CDS-Ecto-sp6_S_contig10:1214668..1215088Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1214669..1215088 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.536.1prot_Ecto-sp6_S_contig10.536.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 1214669..1215088 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.536.1

>prot_Ecto-sp6_S_contig10.536.1 ID=prot_Ecto-sp6_S_contig10.536.1|Name=mRNA_Ecto-sp6_S_contig10.536.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=140bp
MVRSVGETLVVDPLFLALSAVSRGGWDGSLAGIAGISAVFSALQLLTELR
YYVKGASVVLEPVPVVLVDDHHDDDDGGGGGHTLSRDEENQHSSVWSGSD
HSGSSSDDDSGSSSSSLSSCSISDGRSLETASERVASEC*
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mRNA from alignment at Ecto-sp6_S_contig10:1214669..1215088-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.536.1 ID=mRNA_Ecto-sp6_S_contig10.536.1|Name=mRNA_Ecto-sp6_S_contig10.536.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=420bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1214669..1215088- (Ectocarpus species6 EcLAC_371)
ATGGTACGCTCGGTCGGGGAGACCCTGGTGGTCGACCCCCTGTTCTTGGC
GCTTTCCGCGGTGTCGAGGGGCGGCTGGGACGGTAGCCTCGCGGGCATAG
CCGGAATCTCCGCGGTATTCTCCGCGCTACAGCTGCTGACGGAGCTGCGA
TACTACGTCAAGGGAGCCAGCGTGGTCCTGGAACCGGTCCCTGTTGTTCT
CGTTGATGATCATCATGATGATGATGACGGCGGTGGAGGTGGACATACCC
TGTCGAGGGACGAAGAGAACCAACACAGCAGCGTGTGGTCCGGGTCTGAC
CACAGCGGGTCTAGCTCTGATGATGATAGCGGGAGCTCGAGTTCGAGCTT
GAGTTCGTGTTCGATCTCTGATGGACGGAGCCTAGAGACTGCTTCCGAAC
GGGTTGCAAGTGAGTGCTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:1214669..1215088-

>mRNA_Ecto-sp6_S_contig10.536.1 ID=mRNA_Ecto-sp6_S_contig10.536.1|Name=mRNA_Ecto-sp6_S_contig10.536.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=420bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1214669..1215088- (Ectocarpus species6 EcLAC_371)
ATGGTACGCTCGGTCGGGGAGACCCTGGTGGTCGACCCCCTGTTCTTGGC
GCTTTCCGCGGTGTCGAGGGGCGGCTGGGACGGTAGCCTCGCGGGCATAG
CCGGAATCTCCGCGGTATTCTCCGCGCTACAGCTGCTGACGGAGCTGCGA
TACTACGTCAAGGGAGCCAGCGTGGTCCTGGAACCGGTCCCTGTTGTTCT
CGTTGATGATCATCATGATGATGATGACGGCGGTGGAGGTGGACATACCC
TGTCGAGGGACGAAGAGAACCAACACAGCAGCGTGTGGTCCGGGTCTGAC
CACAGCGGGTCTAGCTCTGATGATGATAGCGGGAGCTCGAGTTCGAGCTT
GAGTTCGTGTTCGATCTCTGATGGACGGAGCCTAGAGACTGCTTCCGAAC
GGGTTGCAAGTGAGTGCTGA
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