mRNA_Ecto-sp6_S_contig10.521.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.521.1
Unique NamemRNA_Ecto-sp6_S_contig10.521.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
BLAST of mRNA_Ecto-sp6_S_contig10.521.1 vs. uniprot
Match: A0A6H5KH38_9PHAE (UBX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH38_9PHAE)

HSP 1 Score: 909 bits (2350), Expect = 0.000e+0
Identity = 664/1046 (63.48%), Postives = 673/1046 (64.34%), Query Frame = 1
Query:    1 IATAALGATAEHAPGPSVPSLHATEAEHRQRVFEKQRELEAKQKKQERGEAKRXXXQELAIWKEXXXXXXXXKGGGGGKGPAVQTSPGEGKAVGGDADRADQGRVGASLGAPAE---------------------------------------LRGKELHLRCPFPPPGRAIAGDELDSSTVESVGLFPRGRLMVQFSDGATIKQGEGAMPSAGNDQAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RKSRVEVGTLQDILMDNICQRIRGGGQHQAVSYGGLDAVTGTRILQRLADLRALTPAMLSAFRGCPVAELSLDRNPRVTNALLAELGRKVSIMSLSLAHNDAMTLEGIESLAGLRALASLDISGCKVTNGWLKVIAKLPALETLVLRGCTKVADLGILGLSRGAXXXXXXXXXXXXXXXXXXXAHLSSMVVGGKLECLRLDGLVGLSDDGLDALLLGDGDGL---GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAPASSSLRVLSLSRCPGVADQGLARLGASRALRASLRELDVSGTSATESGLVRLLDPSSXXXXXXXXXXXXXXXXXGRRRPAPLRLESLVLQHGGGGITSVGLSALVGLTSLTRLDLEGCRGSGVTSQALAGLARLVRLQWLSVAAVPAFDDDALTAVCSSCNALRVLNLGSTSVARAAGLALLGSAMIDLSLAHTNIDDDTMDAVASLPRLTTLTLRGTAVTGAGVARLSGLRGLRSLVLTGTRAAQEGGAGGGASSAVERLRARTAALNIRL 2247
            +ATAALGATAEHAPGPSVPSLHATEAEHRQRVFEKQRELEAKQKKQERGE+  XXX ELAIWKE XXXXXXX GG  GKGPAVQTSPGEGKA GGDADRADQGR GA LG  AE                                       LR KEL LRCPFPPPGRAIAGDELDSSTVESVGLFPRGRLMVQFSDGATIK+GEGAMPSA NDQAG   XXXXXXXX              XXXXX                                                                                                                                                                                                                                                                  R +       QDIL+DNICQRIRG GQHQAVSYGGLD  TGTRILQRLA+LRALTPAMLSAFRGCPVAELSLDRNPRVTNALLAELGRKVSIMSLSLAHNDAMTLEGIESLAGLRALASLDISGCKVTNGWLKVIAKLPALETLVLRGCTKVADLGILGL+RGAXXXXXXXXXXXXXXXXXXXAHLSSMVVGGKLECLRLDGLVGLSDDGLDALLLGDGDGL      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    EAPASSSLRVLSLSRCPGVADQGLARLGASR LRASLRELDVSGTS TESGL+RLLDPSS                 GRRRPAPLRLESLVLQHGGGGIT VGLSALVGLTSLTRLDLEGCRG GVTSQALAGLARLVRLQWLSVAAVPAFDDDALTAVCSSCNALRVLNLGSTSVARAAGL LLGSA+IDLSLAHTNIDDDTMDAVASLPRLTTLTLRGTAVTGAGVARLSGLRGLRSLVLTGTRAAQEGGAGGGASSAVE LRARTAALNIRL
Sbjct:   38 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--GRRRPAPLRLESLVLQHGGGGITGVGLSALVGLTSLTRLDLEGCRGPGVTSQALAGLARLVRLQWLSVAAVPAFDDDALTAVCSSCNALRVLNLGSTSVARAAGLGLLGSAVIDLSLAHTNIDDDTMDAVASLPRLTTLTLRGTAVTGAGVARLSGLRGLRSLVLTGTRAAQEGGAGGGASSAVEGLRARTAALNIRL 1081          
BLAST of mRNA_Ecto-sp6_S_contig10.521.1 vs. uniprot
Match: D8LSQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSQ0_ECTSI)

HSP 1 Score: 716 bits (1847), Expect = 1.800e-252
Identity = 449/523 (85.85%), Postives = 452/523 (86.42%), Query Frame = 1
Query:  682 MDNICQRIRGGGQHQAVSYGGLDAVTGTRILQRLADLRALTPAMLSAFRGCPVAELSLDRNPRVTNALLAELGRKVSIMSLSLAHNDAMTLEGIESLAGLRALASLDISGCKVTNGWLKVIAKLPALETLVLRGCTKVADLGILGLSRGAXXXXXXXXXXXXXXXXXXXAHLSSMVVGGKLECLRLDGLVGLSDDGLDALLLGDGDGLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAPASSSLRVLSLSRCPGVADQGLARLGASRALRASLRELDVSGTSATESGLVRLLDPSSXXXXXXXXXXXXXXXXXGRRRPAP-LRLESLVLQHGGGGITSVGLSALVGLTSLTRLDLEGCRGSGVTSQALAGLARLVRLQWLSVAAVPAFDDDALTAVCSSCNALRVLNLGSTSVARAAGLALLGSAMIDLSLAHTNIDDDTMDAVASLPRLTTLTLRGTAVTGAGVARLSGLRGLRSLVLTGTRAAQEGGAGGGASSAVERLRARTAALNIRL 2247
            MDNICQRIRGGGQHQAVSYGGLDA TGTRILQRLADLRALTPAMLSAFRGCPVAELSLDRNPRVTNALLAELGRKVSIMSLSLAHNDAMTLEGIESLAGLRALASLDISGCKVTNGWLKVIAKLPALETL+LRGCTKVADLGILGLSRGAXXXXXXXXXXXXXXXXXXXAHLSSMVVGGKLECLRLDGLVGLSDDGLDALLLGDGDGLG                                                            GLARLGASR LRASLRELDVSGTSATESGLVRLLDPS+XXXXXXXXXXXXXXXXX        LRLESLVLQHGGGGITSVGLSALVGLTSLTR+DLEGCRG GVTSQALAGLARLVRLQWLSVAAVPAFDDDALTAVCSSCNALRVLNLGSTSVARAAGLALLGSAMIDLSLAHTNIDDDTMDAVASLPRLTTLTLRGTAVTGAGVARLSGLRGLRSLVLTGTRAAQEGGAGGGASSAVERLRARTAALNIRL
Sbjct:    1 MDNICQRIRGGGQHQAVSYGGLDAATGTRILQRLADLRALTPAMLSAFRGCPVAELSLDRNPRVTNALLAELGRKVSIMSLSLAHNDAMTLEGIESLAGLRALASLDISGCKVTNGWLKVIAKLPALETLLLRGCTKVADLGILGLSRGAXXXXXXXXXXXXXXXXXXXAHLSSMVVGGKLECLRLDGLVGLSDDGLDALLLGDGDGLG------------------------------------------------------------GLARLGASRPLRASLRELDVSGTSATESGLVRLLDPSAXXXXXXXXXXXXXXXXXXXXXXXXXLRLESLVLQHGGGGITSVGLSALVGLTSLTRMDLEGCRGPGVTSQALAGLARLVRLQWLSVAAVPAFDDDALTAVCSSCNALRVLNLGSTSVARAAGLALLGSAMIDLSLAHTNIDDDTMDAVASLPRLTTLTLRGTAVTGAGVARLSGLRGLRSLVLTGTRAAQEGGAGGGASSAVERLRARTAALNIRL 463          
BLAST of mRNA_Ecto-sp6_S_contig10.521.1 vs. uniprot
Match: D8LSP9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSP9_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 5.180e-55
Identity = 106/118 (89.83%), Postives = 106/118 (89.83%), Query Frame = 2
Query:   35 MPRDRASHRCMPPRRSIDSACSRSSESWKPSKRSRREGRRSAGENRNWRFGRSSERRRSSARAAEGVKVPPCRPLPAKGRR*GETQTVRTRGGWVLLSGPRLSCEARSFTCGA-PSPP 385
            MPRDRASHRCMPPRRSI SACSRSSESWKPSKRSRREGRRSAGENRNWRFGRSSERRRSSARAAEGVKVPPCRPLPAKGRR GETQTVRTRGGWVLLSGPRL   AR     A P PP
Sbjct:    1 MPRDRASHRCMPPRRSIASACSRSSESWKPSKRSRREGRRSAGENRNWRFGRSSERRRSSARAAEGVKVPPCRPLPAKGRREGETQTVRTRGGWVLLSGPRLRKAARQGASSAVPLPP 118          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KH38_9PHAE0.000e+063.48UBX domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LSQ0_ECTSI1.800e-25285.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LSP9_ECTSI5.180e-5589.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:1071114..1081306 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score724.5
Seed ortholog evalue4.9e-206
Seed eggNOG ortholog2880.D8LSQ0
Model size2252
KEGG koko:K10268
Hectar predicted targeting categoryother localisation
Exons12
EggNOG free text desc.F-box LRR-repeat protein
EggNOG OGsKOG1947@1,KOG1947@2759
Cds size2250
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.521.1prot_Ecto-sp6_S_contig10.521.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 1071114..1081306 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348705.0228171-CDS-Ecto-sp6_S_contig10:1071113..10713481682348705.0228171-CDS-Ecto-sp6_S_contig10:1071113..1071348Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1071114..1071348 -
1682348705.0342443-CDS-Ecto-sp6_S_contig10:1071850..10720461682348705.0342443-CDS-Ecto-sp6_S_contig10:1071850..1072046Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1071851..1072046 -
1682348705.0429945-CDS-Ecto-sp6_S_contig10:1072317..10730441682348705.0429945-CDS-Ecto-sp6_S_contig10:1072317..1073044Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1072318..1073044 -
1682348705.052213-CDS-Ecto-sp6_S_contig10:1073647..10737221682348705.052213-CDS-Ecto-sp6_S_contig10:1073647..1073722Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1073648..1073722 -
1682348705.0608046-CDS-Ecto-sp6_S_contig10:1074451..10745621682348705.0608046-CDS-Ecto-sp6_S_contig10:1074451..1074562Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1074452..1074562 -
1682348705.0696926-CDS-Ecto-sp6_S_contig10:1075290..10755241682348705.0696926-CDS-Ecto-sp6_S_contig10:1075290..1075524Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1075291..1075524 -
1682348705.079316-CDS-Ecto-sp6_S_contig10:1075886..10760201682348705.079316-CDS-Ecto-sp6_S_contig10:1075886..1076020Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1075887..1076020 -
1682348705.0885563-CDS-Ecto-sp6_S_contig10:1076770..10768321682348705.0885563-CDS-Ecto-sp6_S_contig10:1076770..1076832Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1076771..1076832 -
1682348705.0975904-CDS-Ecto-sp6_S_contig10:1078362..10784961682348705.0975904-CDS-Ecto-sp6_S_contig10:1078362..1078496Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1078363..1078496 -
1682348705.1062202-CDS-Ecto-sp6_S_contig10:1079801..10799721682348705.1062202-CDS-Ecto-sp6_S_contig10:1079801..1079972Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1079802..1079972 -
1682348705.115526-CDS-Ecto-sp6_S_contig10:1080763..10808721682348705.115526-CDS-Ecto-sp6_S_contig10:1080763..1080872Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1080764..1080872 -
1682348705.1241574-CDS-Ecto-sp6_S_contig10:1081244..10813061682348705.1241574-CDS-Ecto-sp6_S_contig10:1081244..1081306Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 1081245..1081306 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.521.1

>prot_Ecto-sp6_S_contig10.521.1 ID=prot_Ecto-sp6_S_contig10.521.1|Name=mRNA_Ecto-sp6_S_contig10.521.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=750bp
IATAALGATAEHAPGPSVPSLHATEAEHRQRVFEKQRELEAKQKKQERGE
AKRRREQELAIWKEQREEAKQRKGGGGGKGPAVQTSPGEGKAVGGDADRA
DQGRVGASLGAPAELRGKELHLRCPFPPPGRAIAGDELDSSTVESVGLFP
RGRLMVQFSDGATIKQGEGAMPSAGNDQAGGGGGGGGGEPDGGGGDDGGG
GHRGGGGSGGPAARKSRVEVGTLQDILMDNICQRIRGGGQHQAVSYGGLD
AVTGTRILQRLADLRALTPAMLSAFRGCPVAELSLDRNPRVTNALLAELG
RKVSIMSLSLAHNDAMTLEGIESLAGLRALASLDISGCKVTNGWLKVIAK
LPALETLVLRGCTKVADLGILGLSRGAPSLTCLDLAGCTGVTDAGVAHLS
SMVVGGKLECLRLDGLVGLSDDGLDALLLGDGDGLGAAAAAAAAVPAASA
ARAAAARAATARASSSLSDGGGEEEAPASSSLRVLSLSRCPGVADQGLAR
LGASRALRASLRELDVSGTSATESGLVRLLDPSSAAAAAASGEAGGGGAV
VGRRRPAPLRLESLVLQHGGGGITSVGLSALVGLTSLTRLDLEGCRGSGV
TSQALAGLARLVRLQWLSVAAVPAFDDDALTAVCSSCNALRVLNLGSTSV
ARAAGLALLGSAMIDLSLAHTNIDDDTMDAVASLPRLTTLTLRGTAVTGA
GVARLSGLRGLRSLVLTGTRAAQEGGAGGGASSAVERLRARTAALNIRL*
back to top

mRNA from alignment at Ecto-sp6_S_contig10:1071114..1081306-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.521.1 ID=mRNA_Ecto-sp6_S_contig10.521.1|Name=mRNA_Ecto-sp6_S_contig10.521.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=10193bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1071114..1081306- (Ectocarpus species6 EcLAC_371)
ATTGCTACTGCCGCCCTTGGTGCCACGGCGGAGCATGCCCCGGGACCGAG CGTCCCATCGCTGTGAGTTTTTTGCTCCTCTCTGGCGGAGCGGTGTGGTT TGCGATCTCCCCTGTGTGTGTGTGTGTGCTCGTTGCTGCCTCTTTTTTTT GTGATATTTTGCTGCTCTTCTTGTGTGGGTGTGCTGACATCCATCCCCCC AGTGTGTCTGTGTGTTTTTTTTGCTCCCTTCTTGTGTGGGTGTGCTGATA TCCCTCCAGTAGGTCTGTGTTTTTGCTCCCTTCTCGTTTGGGTGAGCTGC CATCCCGCTACATAGCACATGGATGCTCGCTATACCCTGTCGAGTTGTGG GGCTCATGTATCGATTGCCGTTCTTCCCCGAAAACACCTGACCCGCTCCC TTCCCTGTGTGGGGACGTGTCCGCGTTGTGCCAGGCATGCCACCGAGGCG GAGCATCGACAGCGCGTGTTCGAGAAGCAGCGAGAGCTGGAAGCCAAGCA AAAGAAGCAGGAGAGAGGGGAGGCGAAGCGCCGGCGAGAACAGGTTGGGA AACACCCCGCCCTCCCCACCGCAACCCGTCCCCCCTCCCCACGCTTTCTT GGTTTTTCTCGGTGATGTCTGACACAAACAGTTCTGAGCTTGAGGAAATG GCCGACGGGGGGGGGGGGGGGGGGGCAGAGAGAGAGTACCAAGCCTTGGC GAGAAAGCGGAGACGCGATTTCACGAAAGATTTATCCGGGGGGTTGGGTG GATCTTTTTATCCCGCTTGTTTCGAAACCTGAAGCTGCACCTCATTTCGG AGACGACTATTATATTCGCGCCCGCGTATTGTACGTGTTTGAGGGAGGGT TGGCATGCTGTTGCATGTTGTTTATCGTTGCTGCCCTAAGTGGTGGAAGC ATTTCCTGTCGAGCGTGCCGCAATATTTTCTACCCTCTTGCATCCCCCCT GTGTTCTGGCAATGCATTCACGGCATTGCGTTGGTCTTTTGTAGCCGAGA TCATAGAACCGACCTGCGGCGAGAACAGAGAACCTGTTCAACAGGCACCG CCGAAAGCCGCCGTCCGTGGTCCTTCTCGTGTGTCGTGTGGCGTCCAATC CCCCGTCCTACTCCGACACACGTAAAGCCTTCGAAGGCAAGAAACCCAAG AGCAACAGAGGGCACTCACCCTCCCCACCCAACCCACCCTCGACCTGAGA CTGCTGTTTTGCAACTCTTGCGGAGAGCGAAGTCCCCGGTGTTGGTGTGT GTGTCTTTCATATTTAGCGTTGACCGCGCTAACTTTCGTGCATGTGCGTG TGTGTGTGTGCGCGCGTGTTTTCTTTATCGTCAGGAATTGGCGATTTGGA AGGAGCAGCGAGAGGAGGCGAAGCAGCGCAAGGGCGGCGGAGGGGGTAAA GGTCCCGCCGTGCAGACCTCTCCCGGCGAAGGGAAGGCGGTAGGGGGAGA CGCAGACCGTGCGGACCAGGGGAGGGTGGGTGCTTCTCTCGGGGCCCCGG CTGAGGTGCGGAGTCAACTACAAGCAGTGATGGGCTGTTCAGTTCTGTTT TCCGTTTTGTTCCTGCGGCTGTCTCTTGTGTCTTCTGTTCACGGTTGTAC TCCGCACGCGCCGCTGCCATGTTGGTGATCGTTTTTTTTTTTTTTTTTTT TTTTTTGCGGTAACCATGAATGGTGGTCGAGTAGGTTATGTTGTGCGGGG TCGAGAACCCTCACTCCGCGCAAAGGGGATAATCGCACCACGTTGTGCTA AAGTGATGAAGCATCCTCGAGGCAGTTGCACAGCGCTAACAACTGTCTCT GGAGGTGAAAGCACCAGAAAATAAACTAAGTCATACGCCGCTGCCATCCG TACGCAGGGAAGTAAGCACAAGATGCCGAACACCCTTAGCAGCATGCAGC GCACCCTTCATGCGACTCGACAAATACCTCACGGTGCTTCGCGCTTGGTG TTGTGAGAGCCTGGTCCGGTGAGAACCCGGCGTGCTCCGTCCCGGCTTTG CAGGGATGCGAAGTCAATGGTCTAACGACTACGGCATGCACGACTATGAG CATGAGTACCCCCCCCGCACCCCGCACCCCGCACCCCGCACTCTCCTGCT TTCCCCTCTGTCCCGGTATTGTAGAGATGCGAGGCGAATGATCTACCGAC TACGGCATCTTGCGTTTAAATGACTACTCCCCCGCCCCCCCCACCATTTG TTGATGACTACTCCCCCGCCCCCGCGGAACGTGTTGGATTGACTGTCGTC GAAACAGGCGGTGGTGGTGATGCGCCTTCCCGATGGCACATCAGCGACAC ATTCCTTTGGAACCGCGGCTACACTACGGGACGTGTTGTCTTGGCTGCAG TCCACCGAACCCACTGCCGGTAAAAGGAGATAGAGCGGGGGGGGGCACAG AGAGGGGGCGGGGGGGGGGGGGGGGGGGATCAAGAGAGGGATCAGAGGGC TTGGCTGACAGAAGTAGGTGGGGGAAGATAAGGGAAAGCAAAGCAAAGCG GACGCCACACCACGCACAACTCTCCTTGTTTCCATCGACTGATCCAACCT CCGACAAGCCGAAAGACAGCCACACGGATTTTGAGCTGCGGCCTGGTTCT CGATGATCCAAATATCAACGAAGGGTTCGGCGCGCACACACACACGGGTT GGAAACTGGCTCTACAAGCGGACGACTTTTTTTTTTGTCTTGAACCACGA CGAGACATGAATTAATTCGGTCGGATTTCATCAGATGATGTTGCCGCACC TATGTTTAAAACCCGGCCATCGCCACCCTCTCTCTCTCTCTCTCCTCCCT TCCAGGAAAGCTGCGAGGCAAGGAGCTTCACCTGCGGTGCCCCTTCCCCC CCCCGGGCCGCGCCATCGCGGGCGATGAGCTGGACAGCTCTACCGTTGAG AGCGTTGGGCTTTTCCCGAGGGGCCGGCTGATGGTGCAGTTCAGGTGTGG AGGGATGAGCGCGGGCTAGTCGCTTGAAGGGCGCGCGTGCGTGTGTGTGT GTGTGTATGTGTGTTTGATTGGCATCGGGACCGCGCCAACCGGCTGACCA ATGAAAAGACGTCAGTCTCAGTCCGGTTGAAAACACGGAACACTTCTAAG TGCCATTAACTGGGACCCCGTGAGGGGGCGGCATGGGGGAGGCTCAGCTG TTCTCCGGATGAAAGTGTGTGTGTGTGTGTGTATGTACCAAATGACAACA GTCTCGCTTTTGGCACTTTTCCGGAACTGCTCCCGCGGCCGAAGTAACGT TCGTGGCCCCAAGTCTGGTCTTCCCTCCGGCGGAGCGTATTAGCATTCAC AATCACTAGTTAACACCCCCCGTTTACACGAAGTACCGTAATTGTGCGTG TGATGGCACCCATCGTTGATTTCGCACCCATCGGGGTTCTGGCACCGGGG TGCGCAAAAATATCATGAACGGCATGATTTAATTGTATTTCCGCACCGGT GTCGGTGTTATCGCACCCGGTGCGATATCAACGATATAAAATCTGCTAAG GACAAAAAATTGCGTGCTTCCGCAAGTTGCCGGTACCCTCGGGGCCACGT GTCGAACGGTATGATGACGCGGTTGGCAGGTACCAATTGAGGCGTCATTT CATGTATGTATTATCGTACCGTCGTGGTTTGCGCCGTACGTGGAAATTGT TCTTTGTTTTTTCTACGGTGATCCGTACATCGAATGCACTAACTCACTCA CCCAACCTAGCGCACAGCGGTGGTACACATCCCGCACCTCCAACCAACCG AACCAGAAGGAGTTCGTAAACGGTACTACAATTGTACCGGTACCATGCCC CTTGAGGCAGACAAAGACAGAGGGAAGCGCCAGCCCGTAAAAGGAGGGGC TTGCGACCAACAAAGAGGCTGGAAGAAAAACGATACCGTGCCGTATACCT TCCCCAGCAGGGAACCGCAGCGTCTGTTCTCTTTGGCACAAGCCACCCCA AACTCGAATTCGACCTCATCACCGATCACCAATCCGGGCTGGTTGCATGG TACCGCCTACGCAAGCTACATGTACCAGGAACCGCCTGTTCGTTTCTTGA GTATCGCACCTATCGTTGTCATCGCACCGGGGTGCGTTCACTCAGCACCT GATCATGGCCACTGTGATCTCTTCCATATCGCATCCATCGGTGTCGTCGC ACTGGGGGTGCGTTGGAAATCTAGAACGGAATGATTTAATTTCATTTCCG CACCGGTATCGGTGTTATGGCACCCATCGGTGTTATGGCACCGGGGTGCG ATAAAAAACCAAGGCAGGAATGATTTACAAAACGATCGCACCCTGGTGCG TGCCATCACACGCACAATTACGGTAGCCTGAGCCGGCGAAATCCCGGCGG ATCGCTCCGTCCCGGTAGCGAGGCCAACGGTCTGACGACTACGGCATGGT TTTTTTTCATGGGCATACCCCCCTGCCGCCTTTCCCTTCGCTGAGCCCAT CTACGTCCCTCCTTGCTGCCTCAGCGATGGAGCGACGATCAAGCAGGGCG AGGGAGCCATGCCCTCGGCAGGCAACGACCAAGCCGGTGCTACCCGCCGC CGCCGCCGCGGTGGTGGTGGCCGCTTCGGTGGGCGGGGGTTTCCGCAAGG CCCCGGGGGGCGTGGCATGGGCATGGGGATGGGTCGAGGCGGCGCAGCAG CAGCAGCGGGGAGAGGCGGCGGGCGAGGGTTTGTTGCTGGGCGAGGCGGG AGAGGAGGCGTGGCAGCGGCAGCGGCAGCAGCGGCGGCGGCGGCCGCGGC GGCGGCGGCCGCGGCGGCGGCGGCTGCCGATGGTGAGGAGGCGGACGATG ACGACGATGATGGTATGGGAGAGAATGAGGGCGGTAGCGGTGACGAGGAC GAGGACGGGGCGGGCGCCGCGTGGGGGGGGGAGGGTGCGCATCCCTTCGG CGAAGCAGGCGTGGATGACGATAACGACGAAGATGAGATGATGGACGACG ACGACGATGACGATCAGCACAACTTTCTCGCACACCATCTCGGAGCTGGT GCTGCCGGTGCTGCCGGTGCTGCCGGTGCTGCCGGTGCTGCCGGTGCTGC CGGTGCCGCCGCTGCCGGCCTCGGCGCGGGACACGTTCTTGGCGGCGGCG GCGGCGGCGGCGGGGGCGGCCGGAGCGGCGGGGGGAACGCTCCTCTTGGG CTTCTTTCGGAAGCCGCAGCCGCTACCTCCGCAGCGGCGGACGCAGCGGG GACGAGCGACGGTGGCAGTAGCGAGGACCGCGCGGCAGCCGTGAGAAGGC AACGGCTTGCCAGACTCACAGGCGGCGGCGGCGGAGGTGGTGGTGGTGGT GGTGGTGGTGGTGAGCCTGATGGTGGCGGTGGGGACGATGGCGGGGGGGG GCACCGTGGCGGGGGTGGGAGTGGGGGTCCTGCCGCTAGGAAGTCGAGGG TGGAGGTGGGCACATTGCAGGTGAGACGTGAACGAATCGACAAGCACGTT TGAGGTGTGCAAAGGTCTCGTGTATATGGCCGGAAGCGCGGCATGGTCCA CTGCGGCGGTGGGTAGGTACCAAGGGAGCAGGTAGCTCCTTTTACCACCA CTGATGGGCACACCACTCTTTGCCAGGTCGAGTGCGCAAAGGCGCACAGT TCTTGGGAAATGGACGCATAACTCTCGGCTGTTGTCGCCTCTAACAGAAC ACCACCCCAACCAGATTTCGACCGCCGCCCCCCGCCCCCCCTCCCCCGCC CTCTCTACGGCCTCTACCTATATCCAAATCATCACCACATCATCGTGATC ACCAACAACAAACAACAACGACAAACGAAAAGGACATTCTGATGGACAAC ATATGCCAGAGGATACGGGGCGGCGGGCAGCACCAGGCCGTCTCCTACGG TGGCCTCGACGCGGTCACCGGCACGCGCATCCTCCAGCGCCTGGCGGACC TCCGCGCCCTGACCCCGGCCATGCTGTCGGCCTTCCGCGGGTGCCCCGTG GCCGAGCTGTCACTGGACCGAAATCCGAGGGTCACGAACGCTCTCCTGGC AGAGCTCGGCCGCAAGGTAGGTAACTTTTTCCCAGCGTGTGGCTGCCTTG GTTTGACCCGGTGACTGATGCGTTTTTTTCAGGAGGTACCTTCGAGTCGC TGAAGGAGTACGTACCCGTTGTTCGGAGATGGTACCATATTTCATTGAAA GACTATGTGTGCAGGTACCGGTTAGAGATATTACCGCAGCTGCAATCAGA GAGGGGTGTGTTGAAAGTCTGGCGGTGAGTGAGTTGTTGACTTGTTTTTG TTTTAGGGGTAGGAGTGCTGTCATTTGTTAAGTTAGAGCAGCGGCGTGCT TGTATCAAAAGTGCTTAGGCCGTGATCTCTTGAGGCGTGGTATGTATGCC CTATCTATGTAAAGCCGAGAGAAGACCTGACGGATGGACCGCGTCGTTTG CCAGCGGAGCAGGGAGAGGGGGGGGGGGGTGCAAGCCGTACCAGTTCCTA CGGGTCCACCACCGCGGTATGCTGGGTCCTTGGGTAGAGACCCTGCTTTA TTTTTTCTCCTTGCGGACCTGGGGGCCGTTTCGTCATAGTCGAGAATACC AGCGAGTAGCGCTCTGTGCCTCTTTGGCACAAAAAGTAGATGCCACGTAA ATCAGGGTTAGGATAGAATACTTCATGCCGAGAAGGCTCTCAGTTGCGCA GCAACACCATGCTGTGGACGGCATGGAGTTCTCGAGGTTGTTTCGAATCA CCCTACCGCTTGTTGTTGCGCGCGTTCGGTGTGCTTTCGCCAAGGTGTCG ATCATGTCCCTCTCCCTGGCGCACAACGACGCCATGACGCTGGAGGGCAT TGAGAGCCTGGCCGGCCTGAGAGCGCTCGCCAGCCTCGACATCAGCGGGT GCAAGGTACAGGAGGGTCGTCGGTTGTTGGTGCATGTGGAGGTTGTTGCT TTTCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT CTCTGTCTCTCTCTCTCTCTTTCTCTCCCTCTCACGGCCCGTCTGTTTCC CTGTCTCTCCCTGTGCCCATCTCTCTCTCATTCTTGACGTGTAGATAATT TGCGAAATAGTCGAAACAGAATCACGACTGCTGTTGGTGCATCCAACCGT TGCCCTAGAGAGAGTCGCTTGGAGATCCTCTCGGGTGTCTTGCACTCCCT GAATAGCCACAGGTAGACTACACTAAACTGGCGGCGGCCTACGAGTTTCA ACCGCGCCGCAAGTGTTTTGGCAAAGTTTCCGCCATTGCCAGGGGATCAC TCAAACCAGGTTCCACCGCTGACTGCGAAACACTCCACAGCGGCGGCGTG TAGGTCGAAAAGGGTGTTTGTCGGTATCCGTTGCGATGAGGATGCCGCGG CGATAAACGCGGCGGTTATGGCGCGATGCTTGTGTTGCTTTTAATCGTCG AACCTGCTACCAATTGTCATAAAATAGCCACGTAAGACTGCGGTCGCTGG CCTAAACCCTCTTCTCTAGTCTATGTTAGAATCTTTTTTGTGCCTCTTTT TTCGCGCCGCCCGTCAACCGACTGACTTGACCCGAAACGGTGTTGATAAA CCGCGGCGGCCGGCGGGGGCGGCGGCGACGGCAGGTGACCAACGGGTGGC TCAAGGTTATCGCCAAGCTGCCTGCCCTGGAAACTCTCGTGCTCAGAGGC TGCACGAAGGTTAGATAACGTAACGAGGTTTCCGCTGGGGATGGATGACG CATGGAGAAGTTTCCCTCTTCTGGTACCTACAATTGTACAGCGGGAGATG TTTACGGTGCTAGAAAGTTCTGTTCTATTCGGTTAGGGCTGGAAATTGTC GTCTGTTTTGTTGGTGGTCAGGTTTTGCCTATTCTACCAGCGGCCTGTAT CGTGTCTCCCCTTGACGTGGCAAATACTTTTGGCCTGGCGCCCGGGAATG TTCCGGGGCGACGATGATGGTTGTGGTCGGTAGCCCGTTGCTACGACGAG ATGTACACGTCGTCGAAGCAGAAAGTGAGCGCCAGTCGAAGCAGCCGCAT TTTTCGCACGTTTCGACCCCCTTCCGCGCACGTGTCACGCACCAAGCGGT TACAATTGCACTGCTCTCCTTCGCCGTGTTTGTCTACAGCACACATGACA TATACATCGCACCACGCCCCCTCCGGTCATGCCGCGTAACCCCGCCCCGG GAACATGCATCCCGACCCGACCCCCCTCCCCTGCGAAACGCGCGTTGACC CCCCCTACCCTTGCAAAACACGCCTCGTTGGCTGGTTTGTTTTTTACGAA AATCACTCAAAGGTTGCGGATCTCGGCATCCTGGGCCTTTCTCGGGGGGC GCCCTCCCTCACGTGCCTCGACCTGGCCGGCTGCACCGGGGTCACCGACG CCGGGGTGGCGCACCTGTCGTCGATGGTGGTCGGGGGGAAGCTGGAGTGT CTCCGGCTCGACGGGCTCGTCGGCTTGTCCGACGACGGGCTGGACGCCCT CCTCCTGGGGGATGGCGACGGCCTGGGGGCAGCAGCAGCTGCCGCTGCAG CGGTGCCCGCGGCGTCAGCGGCGAGAGCTGCTGCGGCTAGGGCGGCGACC GCGAGAGCATCATCGTCATTATCCGACGGCGGTGGTGAGGAGGAGGCGCC GGCTTCGTCGAGTCTGCGGGTGCTGTCGCTGTCGCGTTGCCCGGGCGTCG CTGACCAGGGCCTTGCGCGCTTGGGAGCCTCCCGGGCGCTGCGGGCGTCG CTACGGGAGCTGGACGTCTCCGGCACGTCCGCCACCGAGAGCGGCCTCGT GCGTCTCCTGGACCCTTCCTCCGCCGCCGCCGCCGCCGCCTCCGGCGAAG CCGGCGGGGGCGGGGCGGTGGTCGGGCGGAGGAGGCCGGCGCCGCTGAGG CTCGAGTCCCTGGTGCTGCAGCATGGCGGGGGGGGGATCACCAGCGTTGG GCTTTCGGCGCTGGTAGGGCTGACGAGCCTCACTCGGCTGGACCTGGAGG GGTGCCGGGGCTCCGGGGTCACGTCTCAGGCTCTCGCGGGTGAGCAAGGT TGGGCGGGGGGGTGATCTTGGGTTGTCTGTCCCCTGGCGAATGTTTTGGT TGGTTGTTGTTGTTGTTGTGTTTCTTGCGTGTTGGCTTGTTGTCATTTGT TGCTGTATAACGTCGTCGCGTGGAGGTGCTGCACCCGGGTCGTATCGAAT GAGTGGCTCACCCCCCCCCCCCCTCCCTGTCAGACCGAAGGATGAGTCAC ACCAACGCGTTCGACGATATGATTGTTTTTTGAAACACCGCCCCCCTCCC CCCCCCCAAGGTCTCGCCCGGCTCGTCCGGCTGCAATGGCTGAGTGTTGC CGCCGTCCCGGCGTTCGACGACGACGCTCTGACAGCGGTGTGCTCCTCCT GCAACGCCCTAAGGGTTCTCAACCTCGGCAGCACCTCGGTGGCGAGGGCG GCGGGCCTAGCGCTTCTGGGGTCGGCCATGATAGACCTGAGCTTAGCCCA CACCAAGTGAGGAGTATTGGTGTAGATCGCATGGCCTTCACGAAGTCAAT GCTCGTCTAAGCTTAGTGCCTTCACCAAGGGAGTATATAAATCCATGCTT GTAGCCTGGACCAGGTAGATCTTGAGCTTATAGCCTCCACAACGTGAATT AGATCCTAAACTTATGTAGCCTGCATGCACCAAGTAGATCTTGAGCTTGT AGCCTTCACAAAGTGAATTTAGATCCTAAGCTTAGCCGTCACCGAGGGAG TAGAGCTTCTGGGGTCGGCCACGAAAGATCTACGCTTGTTCTTCACCAAG GGAATATTTGTCTAGACTGTAGCCTTCTTGTCCAACTGAGTATCAATAAC TTAGCCTTCTTGACCAGGTGAGTACAGACGCAAGCTCGGTTTTCACCAAG CGAGTACATACCTAAGCTAAGCGTTCTTTATTCTCGACGGTTATCTAACC TCTTGACCCCGTTCTCCCCCCTCCCTCCTCCTACCCTATCGACTCAAAAA ACACCAAGCATCGACGACGACACCATGGACGCCGTCGCGTCGCTGCCGCG GCTGACCACGCTCACGCTCAGGGGCACCGCCGTAACCGGGGCGGGGGTCG CGCGACTCTCCGGTCTGCGGGGCCTCCGTTCTTTGGTTCTCACTGGCACC CGTGCCGCCCAGGAGGGGGGCGCTGGCGGCGGGGCCAGCTCTGCTGTCGA AAGGCTTAGGGCAAGGACGGCGGCTCTCAACATCAGGCTCTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:1071114..1081306-

>mRNA_Ecto-sp6_S_contig10.521.1 ID=mRNA_Ecto-sp6_S_contig10.521.1|Name=mRNA_Ecto-sp6_S_contig10.521.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=2250bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:1071114..1081306- (Ectocarpus species6 EcLAC_371)
ATTGCTACTGCCGCCCTTGGTGCCACGGCGGAGCATGCCCCGGGACCGAG
CGTCCCATCGCTGCATGCCACCGAGGCGGAGCATCGACAGCGCGTGTTCG
AGAAGCAGCGAGAGCTGGAAGCCAAGCAAAAGAAGCAGGAGAGAGGGGAG
GCGAAGCGCCGGCGAGAACAGGAATTGGCGATTTGGAAGGAGCAGCGAGA
GGAGGCGAAGCAGCGCAAGGGCGGCGGAGGGGGTAAAGGTCCCGCCGTGC
AGACCTCTCCCGGCGAAGGGAAGGCGGTAGGGGGAGACGCAGACCGTGCG
GACCAGGGGAGGGTGGGTGCTTCTCTCGGGGCCCCGGCTGAGCTGCGAGG
CAAGGAGCTTCACCTGCGGTGCCCCTTCCCCCCCCCGGGCCGCGCCATCG
CGGGCGATGAGCTGGACAGCTCTACCGTTGAGAGCGTTGGGCTTTTCCCG
AGGGGCCGGCTGATGGTGCAGTTCAGCGATGGAGCGACGATCAAGCAGGG
CGAGGGAGCCATGCCCTCGGCAGGCAACGACCAAGCCGGTGGTGGTGGTG
GTGGTGGTGGTGGTGAGCCTGATGGTGGCGGTGGGGACGATGGCGGGGGG
GGGCACCGTGGCGGGGGTGGGAGTGGGGGTCCTGCCGCTAGGAAGTCGAG
GGTGGAGGTGGGCACATTGCAGGACATTCTGATGGACAACATATGCCAGA
GGATACGGGGCGGCGGGCAGCACCAGGCCGTCTCCTACGGTGGCCTCGAC
GCGGTCACCGGCACGCGCATCCTCCAGCGCCTGGCGGACCTCCGCGCCCT
GACCCCGGCCATGCTGTCGGCCTTCCGCGGGTGCCCCGTGGCCGAGCTGT
CACTGGACCGAAATCCGAGGGTCACGAACGCTCTCCTGGCAGAGCTCGGC
CGCAAGGTGTCGATCATGTCCCTCTCCCTGGCGCACAACGACGCCATGAC
GCTGGAGGGCATTGAGAGCCTGGCCGGCCTGAGAGCGCTCGCCAGCCTCG
ACATCAGCGGGTGCAAGGTGACCAACGGGTGGCTCAAGGTTATCGCCAAG
CTGCCTGCCCTGGAAACTCTCGTGCTCAGAGGCTGCACGAAGGTTGCGGA
TCTCGGCATCCTGGGCCTTTCTCGGGGGGCGCCCTCCCTCACGTGCCTCG
ACCTGGCCGGCTGCACCGGGGTCACCGACGCCGGGGTGGCGCACCTGTCG
TCGATGGTGGTCGGGGGGAAGCTGGAGTGTCTCCGGCTCGACGGGCTCGT
CGGCTTGTCCGACGACGGGCTGGACGCCCTCCTCCTGGGGGATGGCGACG
GCCTGGGGGCAGCAGCAGCTGCCGCTGCAGCGGTGCCCGCGGCGTCAGCG
GCGAGAGCTGCTGCGGCTAGGGCGGCGACCGCGAGAGCATCATCGTCATT
ATCCGACGGCGGTGGTGAGGAGGAGGCGCCGGCTTCGTCGAGTCTGCGGG
TGCTGTCGCTGTCGCGTTGCCCGGGCGTCGCTGACCAGGGCCTTGCGCGC
TTGGGAGCCTCCCGGGCGCTGCGGGCGTCGCTACGGGAGCTGGACGTCTC
CGGCACGTCCGCCACCGAGAGCGGCCTCGTGCGTCTCCTGGACCCTTCCT
CCGCCGCCGCCGCCGCCGCCTCCGGCGAAGCCGGCGGGGGCGGGGCGGTG
GTCGGGCGGAGGAGGCCGGCGCCGCTGAGGCTCGAGTCCCTGGTGCTGCA
GCATGGCGGGGGGGGGATCACCAGCGTTGGGCTTTCGGCGCTGGTAGGGC
TGACGAGCCTCACTCGGCTGGACCTGGAGGGGTGCCGGGGCTCCGGGGTC
ACGTCTCAGGCTCTCGCGGGTCTCGCCCGGCTCGTCCGGCTGCAATGGCT
GAGTGTTGCCGCCGTCCCGGCGTTCGACGACGACGCTCTGACAGCGGTGT
GCTCCTCCTGCAACGCCCTAAGGGTTCTCAACCTCGGCAGCACCTCGGTG
GCGAGGGCGGCGGGCCTAGCGCTTCTGGGGTCGGCCATGATAGACCTGAG
CTTAGCCCACACCAACATCGACGACGACACCATGGACGCCGTCGCGTCGC
TGCCGCGGCTGACCACGCTCACGCTCAGGGGCACCGCCGTAACCGGGGCG
GGGGTCGCGCGACTCTCCGGTCTGCGGGGCCTCCGTTCTTTGGTTCTCAC
TGGCACCCGTGCCGCCCAGGAGGGGGGCGCTGGCGGCGGGGCCAGCTCTG
CTGTCGAAAGGCTTAGGGCAAGGACGGCGGCTCTCAACATCAGGCTCTAA
back to top