prot_Ecto-sp6_S_contig99.18820.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig99.18820.1
Unique Nameprot_Ecto-sp6_S_contig99.18820.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length399
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig99.18820.1 vs. uniprot
Match: D7FUM4_ECTSI (HTH_OrfB_IS605 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUM4_ECTSI)

HSP 1 Score: 666 bits (1718), Expect = 1.420e-239
Identity = 389/403 (96.53%), Postives = 391/403 (97.02%), Query Frame = 0 
Query:    1 MSTEQQQARGLDDFWQEPWAQDTWVSTISQNPAAQGLQPSGWMYTSHPGKQDSLDFDLGSSFSQASSEDLPSPGSSPLNHGQWKRGSTASTASSCGSVSVSGGAGHQPIEHXXXXXXXXXRAPIASTASLSSTLPMTPPPGLAHERFVHPAAAXXXXXXXXV-----PHXXXXSQSLLATMGARSGTSRSSSVESDTSPALSLYGGAXXXXXXXXXXXXXPCAFQISGYQTLELLPTAQQRQTLQKWFGVVRWIHNRAVDALRVDSSVSATSLRAAVAESESEHEWAAAVPLAIRDATVAQLVGALHLAQRSAEVAAAATGEAVMAEPLGTAAQNKALKYRTRKDRLEQIVLRADGFQYGIPYPDYFGFAPLASSVPIPDRLPSDAILVRSTERFYLCIREAC 398
            MSTEQQQARGLDDFWQEPWAQDTWVSTISQNPAAQGLQPSGWMYTSHPGKQDSLDFDLGSSFSQASSED PSPGS PLNHGQWKRGSTASTASSCGS+SVSGGAGHQPIEHXXXXXXXXX APIASTASLSSTLPMTPPPGLAHERFVHPAAAXXXXXXXX      PHXXXXSQSLLATMGARSGTSRSSSVESDTSPALSLYGGAXXXXXXXXXXX  PCAFQI GYQTLELLPTAQQRQTLQKWFGVVRWIHNRAVDALRVDSSVSATSLRAAVAESESEHEWAAAVPLAIRDATVAQLVGALHLAQRSAEVAAAATGEAVMAEPLGTAAQNKALKYRTRKDRLEQIVLRADGFQYGIPYPDYFG+APLASSVPIPDRLPSDAILVRSTERFYLCIREAC
Sbjct:    1 MSTEQQQARGLDDFWQEPWAQDTWVSTISQNPAAQGLQPSGWMYTSHPGKQDSLDFDLGSSFSQASSEDPPSPGSPPLNHGQWKRGSTASTASSCGSISVSGGAGHQPIEHXXXXXXXXXXAPIASTASLSSTLPMTPPPGLAHERFVHPAAAXXXXXXXXXXXXXXPHXXXXSQSLLATMGARSGTSRSSSVESDTSPALSLYGGAXXXXXXXXXXX--PCAFQILGYQTLELLPTAQQRQTLQKWFGVVRWIHNRAVDALRVDSSVSATSLRAAVAESESEHEWAAAVPLAIRDATVAQLVGALHLAQRSAEVAAAATGEAVMAEPLGTAAQNKALKYRTRKDRLEQIVLRADGFQYGIPYPDYFGYAPLASSVPIPDRLPSDAILVRSTERFYLCIREAC 401
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig99.18820.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUM4_ECTSI1.420e-23996.53HTH_OrfB_IS605 domain-containing protein n=2 Tax=E... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021027Transposase, putative, helix-turn-helix domainPFAMPF12323HTH_OrfB_IS605coord: 228..254
e-value: 1.5E-6
score: 27.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig99contigEcto-sp6_S_contig99:146287..150242 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig99.18820.1mRNA_Ecto-sp6_S_contig99.18820.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig99 146287..150242 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig99.18820.1 ID=prot_Ecto-sp6_S_contig99.18820.1|Name=mRNA_Ecto-sp6_S_contig99.18820.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=399bp
MSTEQQQARGLDDFWQEPWAQDTWVSTISQNPAAQGLQPSGWMYTSHPGK
QDSLDFDLGSSFSQASSEDLPSPGSSPLNHGQWKRGSTASTASSCGSVSV
SGGAGHQPIEHHHHYLHHHHRAPIASTASLSSTLPMTPPPGLAHERFVHP
AAAAAAGGGGGVPHPHAHSQSLLATMGARSGTSRSSSVESDTSPALSLYG
GAGGGGGGGGGGGGGPCAFQISGYQTLELLPTAQQRQTLQKWFGVVRWIH
NRAVDALRVDSSVSATSLRAAVAESESEHEWAAAVPLAIRDATVAQLVGA
LHLAQRSAEVAAAATGEAVMAEPLGTAAQNKALKYRTRKDRLEQIVLRAD
GFQYGIPYPDYFGFAPLASSVPIPDRLPSDAILVRSTERFYLCIREAC*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021027Transposase_put_HTH