mRNA_Ecto-sp6_S_contig99.18820.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig99.18820.1
Unique NamemRNA_Ecto-sp6_S_contig99.18820.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig99.18820.1 vs. uniprot
Match: D7FUM4_ECTSI (HTH_OrfB_IS605 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUM4_ECTSI)

HSP 1 Score: 666 bits (1718), Expect = 1.420e-239
Identity = 389/403 (96.53%), Postives = 391/403 (97.02%), Query Frame = 1 
Query:    1 MSTEQQQARGLDDFWQEPWAQDTWVSTISQNPAAQGLQPSGWMYTSHPGKQDSLDFDLGSSFSQASSEDLPSPGSSPLNHGQWKRGSTASTASSCGSVSVSGGAGHQPIEHXXXXXXXXXRAPIASTASLSSTLPMTPPPGLAHERFVHPAAAXXXXXXXXV-----PHXXXXSQSLLATMGARSGTSRSSSVESDTSPALSLYGGAXXXXXXXXXXXXXPCAFQISGYQTLELLPTAQQRQTLQKWFGVVRWIHNRAVDALRVDSSVSATSLRAAVAESESEHEWAAAVPLAIRDATVAQLVGALHLAQRSAEVAAAATGEAVMAEPLGTAAQNKALKYRTRKDRLEQIVLRADGFQYGIPYPDYFGFAPLASSVPIPDRLPSDAILVRSTERFYLCIREAC 1194
            MSTEQQQARGLDDFWQEPWAQDTWVSTISQNPAAQGLQPSGWMYTSHPGKQDSLDFDLGSSFSQASSED PSPGS PLNHGQWKRGSTASTASSCGS+SVSGGAGHQPIEHXXXXXXXXX APIASTASLSSTLPMTPPPGLAHERFVHPAAAXXXXXXXX      PHXXXXSQSLLATMGARSGTSRSSSVESDTSPALSLYGGAXXXXXXXXXXX  PCAFQI GYQTLELLPTAQQRQTLQKWFGVVRWIHNRAVDALRVDSSVSATSLRAAVAESESEHEWAAAVPLAIRDATVAQLVGALHLAQRSAEVAAAATGEAVMAEPLGTAAQNKALKYRTRKDRLEQIVLRADGFQYGIPYPDYFG+APLASSVPIPDRLPSDAILVRSTERFYLCIREAC
Sbjct:    1 MSTEQQQARGLDDFWQEPWAQDTWVSTISQNPAAQGLQPSGWMYTSHPGKQDSLDFDLGSSFSQASSEDPPSPGSPPLNHGQWKRGSTASTASSCGSISVSGGAGHQPIEHXXXXXXXXXXAPIASTASLSSTLPMTPPPGLAHERFVHPAAAXXXXXXXXXXXXXXPHXXXXSQSLLATMGARSGTSRSSSVESDTSPALSLYGGAXXXXXXXXXXX--PCAFQILGYQTLELLPTAQQRQTLQKWFGVVRWIHNRAVDALRVDSSVSATSLRAAVAESESEHEWAAAVPLAIRDATVAQLVGALHLAQRSAEVAAAATGEAVMAEPLGTAAQNKALKYRTRKDRLEQIVLRADGFQYGIPYPDYFGYAPLASSVPIPDRLPSDAILVRSTERFYLCIREAC 401
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig99.18820.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUM4_ECTSI1.420e-23996.53HTH_OrfB_IS605 domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig99contigEcto-sp6_S_contig99:146287..150242 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1197
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionTransposase, putative, helix-turn-helix domain
Ec32 orthologEc-26_002150.1
Cds size1197
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350609.135043-CDS-Ecto-sp6_S_contig99:146286..1464311682350609.135043-CDS-Ecto-sp6_S_contig99:146286..146431Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 146287..146431 -
1682350609.1459439-CDS-Ecto-sp6_S_contig99:147091..1474201682350609.1459439-CDS-Ecto-sp6_S_contig99:147091..147420Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 147092..147420 -
1682350609.1561134-CDS-Ecto-sp6_S_contig99:148396..1489831682350609.1561134-CDS-Ecto-sp6_S_contig99:148396..148983Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 148397..148983 -
1682350609.170387-CDS-Ecto-sp6_S_contig99:150106..1502421682350609.170387-CDS-Ecto-sp6_S_contig99:150106..150242Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 150107..150242 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig99.18820.1prot_Ecto-sp6_S_contig99.18820.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig99 146287..150242 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig99.18820.1

>prot_Ecto-sp6_S_contig99.18820.1 ID=prot_Ecto-sp6_S_contig99.18820.1|Name=mRNA_Ecto-sp6_S_contig99.18820.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=399bp
MSTEQQQARGLDDFWQEPWAQDTWVSTISQNPAAQGLQPSGWMYTSHPGK
QDSLDFDLGSSFSQASSEDLPSPGSSPLNHGQWKRGSTASTASSCGSVSV
SGGAGHQPIEHHHHYLHHHHRAPIASTASLSSTLPMTPPPGLAHERFVHP
AAAAAAGGGGGVPHPHAHSQSLLATMGARSGTSRSSSVESDTSPALSLYG
GAGGGGGGGGGGGGGPCAFQISGYQTLELLPTAQQRQTLQKWFGVVRWIH
NRAVDALRVDSSVSATSLRAAVAESESEHEWAAAVPLAIRDATVAQLVGA
LHLAQRSAEVAAAATGEAVMAEPLGTAAQNKALKYRTRKDRLEQIVLRAD
GFQYGIPYPDYFGFAPLASSVPIPDRLPSDAILVRSTERFYLCIREAC*
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mRNA from alignment at Ecto-sp6_S_contig99:146287..150242-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig99.18820.1 ID=mRNA_Ecto-sp6_S_contig99.18820.1|Name=mRNA_Ecto-sp6_S_contig99.18820.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=3956bp|location=Sequence derived from alignment at Ecto-sp6_S_contig99:146287..150242- (Ectocarpus species6 EcLAC_371)
ATGAGCACTGAGCAGCAGCAGGCACGGGGCCTCGACGACTTCTGGCAAGA
ACCTTGGGCCCAGGACACCTGGGTGTCGACGATCAGCCAGAACCCGGCAG
CCCAAGGCCTTCAGCCGTCCGGTTGGATGTACACAAGTGAGTTTTGTAGC
TGCACCAACCAGTAGAGGCAGCAGAACAGGCCCGATCCCTCGCTCTCATC
TCAGCAAAGACTTCCGTACAAAGAGAAACGAGGGACCTGGTGCTGTGTGC
CCGAAAAACGCGCAGATCATTCCAGAACTGCAAGCTTGCGCCACGTATGT
ACATATGTAGGATGGCAGGAGGGAACCACGCGCCACCCACAGAGTAGCAA
GCCGCGTGCGGCAGGAGAGAAGTGCACGATAACTTCCTCGAAAATAGAAC
GCTTTGGTTACCTACACATGCGCTCACTTTGCACTCGGAGTAGCCGGTGT
GGGCAACAGTAACAGGCTTGCAAAGGCCGGGGTAAGTTGTAACCCCATTC
TGCCCGTTCACCAACACTGCGGACCAAGAGGGAATGGCTGCGATGGACGG
GGTTCTTACGTGGCAGGAGAGTCCACCTGCCCACTCGCTGTTTACAAGTC
GTTCGGCGGCGTGCAGGCAGTAGTATGATATATGCCCTCTTTTGTCGTGC
GTTTCACGCCGCAGCAACATCTATCTCCGATGTGCAGTCGCATCGGTGAA
CCCTACCGGCAGCTAACCGGCAAAATGCAAATGTGTCGATGCCATTATTT
TTCGTCGCCTCTTTTCGTCGAAGCGTTGTAAGCGTTGTTTCACGTTCGTT
CGTGAAATTTGATGGAGGAATTACAAGTGCAGCAGTTGTTGCAATTTGGT
GGAGGGATTACACAACGGAGACGGGGATAGATAGGAAGAGAGAGAGCTTC
TATGTAAGCTAAAACACAAACTCAAAATCAGGCACGGGACCGAGTGTACT
GCTGTACCTTCGACCCGCTCTTCAGCGAGCACTTTTTCCAGCGACCAAAG
GGCTCTTCTTATCTTTTATTTTCAATCAATCGCGCGCACACAGACATCCA
TCCGTGCTACACAGTACATAACTGCCCAATACTCGAGTATCCACTTGCTG
TATGCATACAAGAAACTAAAATCTGCTGCATGCCGCCAAGTACACGTGTT
AAACCCTCCGCAAAACGGGCCACGTGTCGACGCGAAGAAGGTCAACAAAC
AACCAGCCTCAAGCCTAACCAACACCCCTGCTGCTCCTCGGCTCTTCGTC
GGGGTAAAGGTCACCCAGGAAAGCAAGACAGCTTGGACTTCGACTTGGGC
TCTAGCTTCTCCCAGGCATCCAGCGAGGATCTCCCGTCCCCGGGCTCATC
CCCCCTCAACCACGGGCAATGGAAAAGAGGCAGCACCGCAAGCACCGCGA
GCAGCTGCGGCAGCGTCAGCGTTAGCGGCGGCGCAGGCCACCAGCCCATC
GAGCACCACCACCACTACCTCCACCACCACCACCGTGCCCCGATAGCGAG
TACCGCATCCCTTTCGTCCACGCTACCGATGACACCCCCCCCCGGGCTCG
CCCACGAGCGATTCGTCCACCCCGCTGCTGCCGCCGCCGCTGGCGGCGGC
GGCGGCGTTCCTCACCCCCACGCTCACAGTCAGTCACTCCTAGCCACAAT
GGGGGCCCGGTCGGGTACGAGCCGATCGTCGAGTGTCGAGTCTGACACTT
CGCCCGCCCTGAGCCTCTACGGGGGGGCTGGCGGCGGAGGCGGAGGCGGA
GGCGGCGGCGGAGGCGGGCCTTGCGCTTTCCAGATCTCGGGCTACCAGAC
GTTGGAGCTGCTCCCCACGGCACAGCAACGGCAGACGCTGCAGAAGGTGC
GGTGGGCGTTGATTTCCTCGAGTTTTCGTTCGTGCCAACGACAAGAGAGT
GTGTTCGTTGTTTTGAAGCTTGAAGTGGAACTACTGAGTACGCCATAGCG
ATGTTTTTAGTTGCTGAACGGCAGGGCAAACGCGCCCACCTCATTCAATG
GTAGGTGTATGTCGGAATGTACATCGCTTGTTGTCGCGTCGACTTCTTTG
GTGTTCAGGGTTCGATAGCCGGCGGTAAGGATCACCGCCGACATCCTCCG
CGTGTCAAGAGTGATCCTACGCCCTACTGCTGCTCCTGCAGCGTGTGTGA
TCGGTTTGTTCTGTGTTGGAATAACAGTGCCCGCGAATCGTTGGCACGCT
TGAAGTTCTCACGTCTCCTCCAGCAACAGCAGCAGTGGTCCTCGGCACGA
ACTCGATGAGTCAAATACTCCGATGACACCAAGTTTGAGACACTAGAAAC
ACACAATTTCCCTTCTGCGGCAAGTGTTGACGCTGCCTGTACTTGTGGCT
TACGACCTCGATTGAGCGAAACGCTCGTGCAACATCCACCGGCCGCGCCT
CACCAGCAACGCAACCCCCCCCCCCTTTGCCACGAATGACCCTCGCTCGC
TTGAAGAACATTCATCTAGACTGTAGGTTGTTTTCCTTCTTTTCCCTGGC
AACAGAAGTCCTTCGAAAGCCTCGAAAGTACAGAACACAACATCAACAAC
GACCGGCCATGCGGCACACAGATCAAAACCCAGCTCTGCACCGTTTTCCC
CAGCTTAGCACGTGGTACCGCCAAATTTTTTCATGAATTTGGGGGAGAAA
TGCGCGAGGAGAACCCGAACGTTGGCGGTGTCTCCGGCGGAAATAAAAAG
CGGTCTTCCGCTTCGAACGGGATGGTGAGTGGCCGGTGATCAAACGACCC
AACGTCAGCAACAAATCAGTAGACCCCCCGCCCGTCCGTCCTCGCTTCCT
CTTCCCCCGTCTCTCCCAACAGTGGTTCGGCGTCGTCCGGTGGATCCACA
ACCGCGCCGTCGATGCCCTCCGCGTGGACTCAAGCGTGTCCGCCACCAGC
CTCCGGGCGGCGGTGGCCGAGTCCGAGTCCGAGCACGAGTGGGCGGCCGC
GGTGCCCCTGGCCATCCGCGACGCCACGGTGGCGCAGCTCGTGGGAGCGC
TGCACCTCGCGCAGCGGTCGGCGGAGGTCGCGGCGGCGGCTACCGGGGAA
GCCGTGATGGCGGAGCCCCTGGGGACGGCGGCGCAGAACAAGGCCCTCAA
GTACCGCACCAGGAAGGACAGGCTTGAGCAGATCGTTCTTCGGGCGGATG
GGTGAGATGTGGCCAAGGTGCTGGGCTTTTGATGTAGTGTTCGGCCCCAG
GGGGTTCTGGTGGTGGCGCGGCTGCTGCTGCTGCTGCTGTCGCCGTCGCG
AGGTTGCGTGGTTGCTGTTGCAATGAACGACGTGGTTTTCTCCTCGCGGC
GAGTTCGTTTGATGTATGCGTCAACATCACATGAATCTGTGCATGATGTG
ACGTCACGACAGCACACACGCATCTGCTTCGTTCATCGCACCGTCGCATT
TCACCTCTCGTGCTGCTGGTGGCGCTAAAGCCTGCGTATCGGAGTACGTG
AGTCAAAGCCGCTTTTGCAATGGTAGAGCGAACTATTTTTCGTGCTGGTG
ATGTCTCTGCGCCGCACTTTTCAGCTCTCTTGAGGAGACAAAACAGGGAA
CATTGAGCTCATTCTTTAGCCGGACCATGTCGCAGGCCAGGCCGTGGCAT
ATCGCAGAATTCCTAGTCCCTCCGTGCTAGAAGGCTTTCGTCTGGTAGGC
AGCCATGCTGCTTGTGCGCATTTGCTGGCTGGTTCAAGCACGAGAAAAGC
GCACAAAATCCAACGAAATCCAACGCCCGTTCGCTTGCGTATGAACGTAG
CTCTAGCGGCCGCATGGTGACCCCCTCCCGCCCCCCCGCCACCCTCCCCG
CCCCAAAACAGGTTCCAGTATGGCATCCCCTACCCGGACTACTTCGGATT
CGCGCCGTTGGCTTCGTCGGTGCCGATCCCGGATCGTCTGCCGTCCGACG
CCATTCTTGTACGCAGCACGGAGCGGTTCTACCTGTGCATCCGGGAAGCG
TGTTAA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig99:146287..150242-

>mRNA_Ecto-sp6_S_contig99.18820.1 ID=mRNA_Ecto-sp6_S_contig99.18820.1|Name=mRNA_Ecto-sp6_S_contig99.18820.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1197bp|location=Sequence derived from alignment at Ecto-sp6_S_contig99:146287..150242- (Ectocarpus species6 EcLAC_371)
ATGAGCACTGAGCAGCAGCAGGCACGGGGCCTCGACGACTTCTGGCAAGA
ACCTTGGGCCCAGGACACCTGGGTGTCGACGATCAGCCAGAACCCGGCAG
CCCAAGGCCTTCAGCCGTCCGGTTGGATGTACACAAGTCACCCAGGAAAG
CAAGACAGCTTGGACTTCGACTTGGGCTCTAGCTTCTCCCAGGCATCCAG
CGAGGATCTCCCGTCCCCGGGCTCATCCCCCCTCAACCACGGGCAATGGA
AAAGAGGCAGCACCGCAAGCACCGCGAGCAGCTGCGGCAGCGTCAGCGTT
AGCGGCGGCGCAGGCCACCAGCCCATCGAGCACCACCACCACTACCTCCA
CCACCACCACCGTGCCCCGATAGCGAGTACCGCATCCCTTTCGTCCACGC
TACCGATGACACCCCCCCCCGGGCTCGCCCACGAGCGATTCGTCCACCCC
GCTGCTGCCGCCGCCGCTGGCGGCGGCGGCGGCGTTCCTCACCCCCACGC
TCACAGTCAGTCACTCCTAGCCACAATGGGGGCCCGGTCGGGTACGAGCC
GATCGTCGAGTGTCGAGTCTGACACTTCGCCCGCCCTGAGCCTCTACGGG
GGGGCTGGCGGCGGAGGCGGAGGCGGAGGCGGCGGCGGAGGCGGGCCTTG
CGCTTTCCAGATCTCGGGCTACCAGACGTTGGAGCTGCTCCCCACGGCAC
AGCAACGGCAGACGCTGCAGAAGTGGTTCGGCGTCGTCCGGTGGATCCAC
AACCGCGCCGTCGATGCCCTCCGCGTGGACTCAAGCGTGTCCGCCACCAG
CCTCCGGGCGGCGGTGGCCGAGTCCGAGTCCGAGCACGAGTGGGCGGCCG
CGGTGCCCCTGGCCATCCGCGACGCCACGGTGGCGCAGCTCGTGGGAGCG
CTGCACCTCGCGCAGCGGTCGGCGGAGGTCGCGGCGGCGGCTACCGGGGA
AGCCGTGATGGCGGAGCCCCTGGGGACGGCGGCGCAGAACAAGGCCCTCA
AGTACCGCACCAGGAAGGACAGGCTTGAGCAGATCGTTCTTCGGGCGGAT
GGGTTCCAGTATGGCATCCCCTACCCGGACTACTTCGGATTCGCGCCGTT
GGCTTCGTCGGTGCCGATCCCGGATCGTCTGCCGTCCGACGCCATTCTTG
TACGCAGCACGGAGCGGTTCTACCTGTGCATCCGGGAAGCGTGTTAA
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