prot_Ecto-sp6_S_contig98.18756.1 (polypeptide) Ectocarpus species6 EcLAC_371

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp6_S_contig98.18756.1
Unique Nameprot_Ecto-sp6_S_contig98.18756.1
Typepolypeptide
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Sequence length118
Homology
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BLAST of mRNA_Ecto-sp6_S_contig98.18756.1 vs. uniprot
Match: A0A6H5KHI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHI6_9PHAE)

HSP 1 Score: 226 bits (577), Expect = 3.290e-72
Identity = 111/117 (94.87%), Postives = 113/117 (96.58%), Query Frame = 0 
Query:    2 GDGEAGGQRASNSSTRQVGAPLGSTTSYKVSRWAQWLESICVAGPILSILLVITKCLARLVAGPGSGSGCGLETAWFWSSIGWSAAASGVEFVLATRFTSTCRRYCLVRCCRKRGDY 118
            GDGEA GQR SNSSTRQVGAP GS+TSYKVSRWAQWLESICVAGPILSILLVITKCLARLVAGPGSGSGCGLETAWFWSSIGW AAASGVEFVLATRFTSTCRRYCL+RCCRKRGDY
Sbjct:  143 GDGEAAGQRTSNSSTRQVGAPRGSSTSYKVSRWAQWLESICVAGPILSILLVITKCLARLVAGPGSGSGCGLETAWFWSSIGWGAAASGVEFVLATRFTSTCRRYCLLRCCRKRGDY 259
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig98.18756.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KHI6_9PHAE3.290e-7294.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 34..54
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 55..118
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..33
NoneNo IPR availableTMHMMTMhelixcoord: 40..62
NoneNo IPR availableTMHMMTMhelixcoord: 77..99

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig98contigEcto-sp6_S_contig98:197771..201008 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig98.18756.1mRNA_Ecto-sp6_S_contig98.18756.1Ectocarpus species6 EcLAC_371mRNAEcto-sp6_S_contig98 197771..201008 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp6_S_contig98.18756.1 ID=prot_Ecto-sp6_S_contig98.18756.1|Name=mRNA_Ecto-sp6_S_contig98.18756.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=118bp
GGDGEAGGQRASNSSTRQVGAPLGSTTSYKVSRWAQWLESICVAGPILSI
LLVITKCLARLVAGPGSGSGCGLETAWFWSSIGWSAAASGVEFVLATRFT
STCRRYCLVRCCRKRGDY
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